Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

14926500 .. 14931166

Gene Structure 4667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1189100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGAATTAGAAGATAAATTTGTTAGTAAAGTTTCTGGTGTTCAAAGCCTCTCTTGCAGTGTGCAAAGCACTCCCGAGAAGAATGGGCATTCAGATGATGCTTCACAAAGTCCAGAGCTTCTTCAAGAGTTTCTGAAATCAGGTCCCAAGAAGGAACTGCTTAGAACTTGCTTTGAAAAGGACAAGAAAAACTTGAATTCATCAAAAAATAAAATGACTGAACCTTTGAAGACTACTAACAAGACGAGTAAGAAGCAGGATGCAAAGAAAGCTTCTTCTAGTCCAAATATTCTTCCTAAAAAACAAGGCAGAAAGGGGGAAAATCCTATGCGGCTCTCACCAGCTTCTGATCAGTCTCCAGAATTTGGATCTTCAAGCTCATGGATCTGTAAAAACTCTGCTTGTAGAGCTGTTCTATCCATAGATGACGCATTTTGCAGGAGGTGCTCTTGCTGTATATGTCATTTGTTTGATGACAACAAGGACCCTAGCCTTTGGTTAGTGTGCACATCTGAATCTGGTGGCGGAGATTCCTGTGGGTTGTCTTGTCACATTGAGTGCGCCCTTCAACGTGCAAAGGTGGGAGTTGTTGATCTCGGGCAATTGATGCAGCTAGATGGTAGTTATTGTTGCGCTTCCTGTGGTAAAGTTTCGGGGATACTGGGAAATTGGAAGAAGCAGCTCATTGTGGCAAAGGATGCTCGCCGTGTTGATGTACTTTGTTATAGGATATACTTGAGTTACAGACTCTTGCATGGGACTTCAAAATTTAATGAAGTACATGAAATTGTGAAAGAAGCAAAGTCTAAACTAGAGACAGAAGTTGGCCCAGTGAATGGCGTTTCCGCAAAGATGGCACGAGGAATAGTCAGCAGACTATCAATTGCTGGTGACGTGCTGAAACTCTGCTCCCTTGCAATTCAGAAAGCAGATGAATGGCTGGCCAGTGTTTCTAATGCGGATCCAAATTCCCGAGAGGGTTCACTTCCTGCAGCTTGCAAGTTTATTTTTCAAGAAGTGGCATCATCCTCTGTTGTGATTATATTGATTGAATTGTCTAATGCATCGTCTGACGATATTAAGGGCTACAAGCTCTGGTATTACAAGAGTCGAGAAGAATCACACACAAAAGAGCCTAGTTGTATCTTTCCAAGATCTCAGAGAAGGATTTTGATATCCAATCTGCAGCCTTGCACAGAGTATACGTTTAGGATAATATCTTATACAGAGGCTGGTGACTTGGGTCACTCTGAGGCAAAGTGTTTCACCAAGAGTGTTGAGATAATTCACAGAAGCTCCATTTCACCAGTTTCCAGGAATCATACGAAAGAGAATCCGATCATCGAAGCAGATTCTAGTGCCAAGAGAGAGTCTGAAACTACAACAGCAGTTGGTCCTTCTTCTGAGTTTAAAGTTCGAGATCTTGGAAAGGTACTTCGTCTGGCTTGGGCTCAAGAGCAAGGCAACTCTGAGGGGTTTTGTAGTGCTGATAAAGAAACGTGGTGTGGAGTAAGCAGCACAATAAAAACTGAAACTCCACAAGAACCATTGCCTTCAGTTTCGCACAGGCTTGACTTAAATGTTGCTTCAATGCCCGATCTGAACGAAGAGCTAACCCCGCCATTTGAATCCTCCAGAGATGAAGACAATGGATACACTTTGCAGCATGCTGTTGAAGCAGATGATGATGCTGCCTCTCATGACCTAGTGAAGAATGGTTTAGCAAGATCACATGGTAGTGGTGATTCGCAGACCTGGACTCACGGGCCTAATGGAGATGTCCCAGCTGTTGATTCCCGGGCAGAAGTTGGCAGGAAGAGGGCAGCAAACACAAATGAAGAGATATATGATTGTGATAGCACACTAATAAACGGGCCACCGGCGCATATTTCTAATGGTTCTTATTGCTTGGACGAGAACTTTGAGTACTGTGTGAAAATAATCCGGTGGCTGGAATGTGAGGGTCACATTACGCAGGAATTCAGGTTGAAATTGCTAACATGGTTTAGTTTGAGATCGACTGAGCAGGAGCGTAGGGTGGTCAATACCTTTATTCATACTATGATCGAGGATCCAAGTAGCTTGGCAGGACAGTTAGTTGACTCATTTTCAGATATCGTGTCCAACAAGAGGCCACGAAATGGATTCTGTAGTAAGCTGTGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

723

Amino Acids

79.74

Weight (kDa)

6.35

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	130 - 248	9.4e-33	PHD - plant homeodomain finger protein
fn3	PF00041	336 - 417	7.2e-06	Fibronectin type III domain
Fn3_VIN3	PF23376	337 - 423	7.1e-31	VIN3-like, fibronectin type-III domain
VIN3_C	PF23380	638 - 711	8.6e-40	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	365, 836, 2141
AccI	GTMKAC	1 cut(s)	1202
AciI	CCGC	5 cut(s)	331, 525, 846, 959, 1619
AclWI	GGATC	6 cut(s)	376, 392, 956, 969, 2066, 2079
AcoI	YGGCCR	1 cut(s)	942
AcsI	RAATTY	6 cut(s)	17, 196, 362, 767, 967, 1979
AcuI	CTGAAG	1 cut(s)	1539
AfaI	GTAC	4 cut(s)	717, 780, 1434, 1928
AfiI	CCNNNNNNNGG	5 cut(s)	365, 836, 1951, 2130, 2141
AjiI	CACGTC	1 cut(s)	895
AjnI	CCWGG	2 cut(s)	1313, 1754
Alw21I	GWGCWC	2 cut(s)	449, 509
Alw26I	GTCTC	2 cut(s)	360, 809
Alw44I	GTGCAC	1 cut(s)	505
AlwI	GGATC	6 cut(s)	376, 392, 956, 969, 2066, 2079
AlwNI	CAGNNNCTG	2 cut(s)	347, 1232
Ama87I	CYCGRG	4 cut(s)	74, 596, 972, 1797
AoxI	GGCC	5 cut(s)	826, 942, 1766, 1874, 2132
ApaLI	GTGCAC	1 cut(s)	505
ApeKI	GCWGC	8 cut(s)	610, 679, 992, 1186, 1515, 1663, 1691, 1823
ApoI	RAATTY	6 cut(s)	17, 196, 362, 767, 967, 1979
ArsI	GACNNNNNNTTYG	4 cut(s)	208, 240, 1904, 1936
AspLEI	GCGC	3 cut(s)	563, 635, 1885
AspS9I	GGNCC	6 cut(s)	143, 484, 827, 1394, 1766, 1874
AsuC2I	CCSGG	2 cut(s)	1798, 1799
AsuHPI	GGTGA	6 cut(s)	330, 902, 1247, 1258, 1296, 1754
AvaI	CYCGRG	4 cut(s)	74, 596, 972, 1797
AvaII	GGWCC	3 cut(s)	143, 484, 1394
BaeGI	GKGCMC	1 cut(s)	509
BalI	TGGCCA	1 cut(s)	944
BamHI	GGATCC	2 cut(s)	961, 2071
BanII	GRGCYC	1 cut(s)	1453
BauI	CACGAG	1 cut(s)	858
BbsI	GAAGAC	2 cut(s)	236, 1650
Bbv12I	GWGCWC	2 cut(s)	449, 509
BbvI	GCAGC	8 cut(s)	622, 691, 1004, 1198, 1527, 1675, 1678, 1835
BccI	CCATC	2 cut(s)	611, 847
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	2 cut(s)	1315, 1756
BciVI	GTATCC	2 cut(s)	651, 1646
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	2 cut(s)	1798, 1799
BcoDI	GTCTC	2 cut(s)	360, 809
BfaI	CTAG	7 cut(s)	279, 489, 614, 812, 1137, 1356, 1706
BfmI	CTRYAG	3 cut(s)	990, 1184, 2149
BfuI	GTATCC	2 cut(s)	651, 1646
BglII	AGATCT	2 cut(s)	1154, 1420
BisI	GCNGC	9 cut(s)	332, 611, 680, 993, 1187, 1516, 1664, 1692, 1824
BlsI	GCNGC	9 cut(s)	333, 612, 681, 994, 1188, 1517, 1665, 1693, 1825
BmcAI	AGTACT	1 cut(s)	1928
Bme1390I	CCNGG	4 cut(s)	1315, 1756, 1798, 1799
Bme18I	GGWCC	3 cut(s)	143, 484, 1394
BmeT110I	CYCGRG	4 cut(s)	74, 596, 972, 1797
BmgBI	CACGTC	1 cut(s)	895
BmgT120I	GGNCC	6 cut(s)	143, 484, 827, 1394, 1766, 1874
BmiI	GGNNCC	4 cut(s)	145, 486, 963, 2073
BmrFI	CCNGG	4 cut(s)	1315, 1756, 1798, 1799
BmrI	ACTGGG	2 cut(s)	671, 824
BmsI	GCATC	7 cut(s)	88, 250, 597, 688, 1031, 1073, 1678
BmuI	ACTGGG	2 cut(s)	671, 824
BoxI	GACNNNNGTC	1 cut(s)	1242
BpiI	GAAGAC	2 cut(s)	236, 1650
BpmI	CTGGAG	2 cut(s)	342, 1618
BpuEI	CTTGAG	2 cut(s)	757, 1437
BpuMI	CCSGG	2 cut(s)	1798, 1799
BsaJI	CCNNGG	1 cut(s)	1797
BsaWI	WCCGGW	1 cut(s)	1944
BsaXI	ACNNNNNCTCC	4 cut(s)	1280, 1310, 1519, 1549
Bsc4I	CCNNNNNNNGG	5 cut(s)	365, 836, 1951, 2130, 2141
Bse118I	RCCGGY	1 cut(s)	1879
Bse1I	ACTGG	4 cut(s)	666, 830, 945, 1307
Bse3DI	GCAATG	1 cut(s)	1547
BseBI	CCWGG	2 cut(s)	1315, 1756
BseDI	CCNNGG	1 cut(s)	1797
BseGI	GGATG	3 cut(s)	265, 703, 1025
BseLI	CCNNNNNNNGG	5 cut(s)	365, 836, 1951, 2130, 2141
BseMI	GCAATG	1 cut(s)	1547
BseMII	CTCAG	5 cut(s)	1172, 1242, 1395, 1461, 2013
BseNI	ACTGG	4 cut(s)	666, 830, 945, 1307
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	8 cut(s)	622, 691, 1004, 1198, 1527, 1675, 1678, 1835
BseYI	CCCAGC	1 cut(s)	1783
BshFI	GGCC	5 cut(s)	828, 944, 1768, 1876, 2134
BsiHKAI	GWGCWC	2 cut(s)	449, 509
BsiHKCI	CYCGRG	4 cut(s)	74, 596, 972, 1797
BsiSI	CCGG	3 cut(s)	1798, 1880, 1945
BslFI	GGGAC	3 cut(s)	129, 772, 1766
BslI	CCNNNNNNNGG	5 cut(s)	365, 836, 1951, 2130, 2141
BsmAI	GTCTC	2 cut(s)	360, 809
BsmFI	GGGAC	3 cut(s)	129, 772, 1766
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	5 cut(s)	828, 944, 1768, 1876, 2134
BsoBI	CYCGRG	4 cut(s)	74, 596, 972, 1797
Bsp1286I	GDGCHC	3 cut(s)	449, 509, 1453
BspACI	CCGC	5 cut(s)	331, 525, 846, 959, 1619
BspANI	GGCC	5 cut(s)	828, 944, 1768, 1876, 2134
BspCNI	CTCAG	5 cut(s)	1171, 1243, 1396, 1462, 2014
BspHI	TCATGA	1 cut(s)	1699
BspLI	GGNNCC	4 cut(s)	145, 486, 963, 2073
BspMAI	CTGCAG	2 cut(s)	994, 1188
BspPI	GGATC	6 cut(s)	376, 392, 956, 969, 2066, 2079
BspQI	GCTCTTC	1 cut(s)	1602
BsrDI	GCAATG	1 cut(s)	1547
BsrFI	RCCGGY	1 cut(s)	1879
BsrI	ACTGG	4 cut(s)	666, 830, 945, 1307
BssAI	RCCGGY	1 cut(s)	1879
BssECI	CCNNGG	1 cut(s)	1797
BssNAI	GTATAC	1 cut(s)	1203
BssSI	CACGAG	1 cut(s)	858
Bst1107I	GTATAC	1 cut(s)	1203
Bst2BI	CACGAG	1 cut(s)	858
Bst2UI	CCWGG	2 cut(s)	1315, 1756
Bst4CI	ACNGT	2 cut(s)	1931, 2094
Bst6I	CTCTTC	3 cut(s)	1602, 1811, 1833
BstAPI	GCANNNNNTGC	3 cut(s)	444, 607, 698
BstC8I	GCNNGC	4 cut(s)	703, 942, 997, 1668
BstDEI	CTNAG	6 cut(s)	161, 1158, 1251, 1404, 1470, 2022
BstF5I	GGATG	3 cut(s)	265, 703, 1025
BstHHI	GCGC	3 cut(s)	563, 635, 1885
BstMAI	GTCTC	2 cut(s)	360, 809
BstNI	CCWGG	2 cut(s)	1315, 1756
BstNSI	RCATGY	1 cut(s)	1670
BstPAI	GACNNNNGTC	1 cut(s)	1242
BstSCI	CCNGG	4 cut(s)	1313, 1754, 1796, 1797
BstSFI	CTRYAG	3 cut(s)	990, 1184, 2149
BstSLI	GKGCMC	1 cut(s)	509
BstV1I	GCAGC	8 cut(s)	622, 691, 1004, 1198, 1527, 1675, 1678, 1835
BstV2I	GAAGAC	2 cut(s)	236, 1650
BstX2I	RGATCY	6 cut(s)	368, 384, 961, 1154, 1420, 2071
BstYI	RGATCY	6 cut(s)	368, 384, 961, 1154, 1420, 2071
BstZ17I	GTATAC	1 cut(s)	1203
BsuI	GTATCC	2 cut(s)	651, 1646
BsuRI	GGCC	5 cut(s)	828, 944, 1768, 1876, 2134
BtrI	CACGTC	1 cut(s)	895
BtsCI	GGATG	3 cut(s)	265, 703, 1025
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 837, 952
Cac8I	GCNNGC	4 cut(s)	703, 942, 997, 1668
CaiI	CAGNNNCTG	2 cut(s)	347, 1232
CciI	TCATGA	1 cut(s)	1699
CfoI	GCGC	3 cut(s)	563, 635, 1885
Cfr10I	RCCGGY	1 cut(s)	1879
Cfr13I	GGNCC	6 cut(s)	143, 484, 827, 1394, 1766, 1874
Cfr9I	CCCGGG	1 cut(s)	1797
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	4 cut(s)	716, 779, 1433, 1927
CviAII	CATG	7 cut(s)	381, 755, 782, 1667, 1700, 1733, 2001
CviQI	GTAC	4 cut(s)	716, 779, 1433, 1927
DdeI	CTNAG	6 cut(s)	161, 1158, 1251, 1404, 1470, 2022
DraI	TTTAAA	1 cut(s)	1411
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	3 cut(s)	1602, 1811, 1833
EarI	CTCTTC	3 cut(s)	1602, 1811, 1833
EciI	GGCGGA	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	1453
Eco32I	GATATC	2 cut(s)	1176, 2116
Eco47I	GGWCC	3 cut(s)	143, 484, 1394
Eco57I	CTGAAG	1 cut(s)	1539
Eco88I	CYCGRG	4 cut(s)	74, 596, 972, 1797
EcoO109I	RGGNCCY	2 cut(s)	143, 484
EcoRI	GAATTC	2 cut(s)	196, 1979
EcoRII	CCWGG	2 cut(s)	1313, 1754
EcoRV	GATATC	2 cut(s)	1176, 2116
EcoT22I	ATGCAT	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	1453
FaeI	CATG	7 cut(s)	384, 758, 785, 1670, 1703, 1736, 2004
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 176, 208
FaqI	GGGAC	3 cut(s)	129, 772, 1766
FatI	CATG	7 cut(s)	380, 754, 781, 1666, 1699, 1732, 2000
FauI	CCCGC	1 cut(s)	1626
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	1202
Fnu4HI	GCNGC	9 cut(s)	332, 611, 680, 993, 1187, 1516, 1664, 1692, 1824
FokI	GGATG	3 cut(s)	272, 710, 1012
FriOI	GRGCYC	1 cut(s)	1453
Fsp4HI	GCNGC	9 cut(s)	332, 611, 680, 993, 1187, 1516, 1664, 1692, 1824
FspBI	CTAG	7 cut(s)	279, 489, 614, 812, 1137, 1356, 1706
GlaI	GCGC	3 cut(s)	562, 634, 1884
GluI	GCNGC	9 cut(s)	332, 611, 680, 993, 1187, 1516, 1664, 1692, 1824
GsaI	CCCAGC	1 cut(s)	1787
GsuI	CTGGAG	2 cut(s)	342, 1618
HaeIII	GGCC	5 cut(s)	828, 944, 1768, 1876, 2134
HapII	CCGG	3 cut(s)	1798, 1880, 1945
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	3 cut(s)	563, 635, 1885
Hin1II	CATG	7 cut(s)	384, 758, 785, 1670, 1703, 1736, 2004
Hin6I	GCGC	3 cut(s)	561, 633, 1883
HinP1I	GCGC	3 cut(s)	561, 633, 1883
HincII	GTYRAC	1 cut(s)	2101
HindII	GTYRAC	1 cut(s)	2101
HindIII	AAGCTT	1 cut(s)	270
HpaII	CCGG	3 cut(s)	1798, 1880, 1945
HphI	GGTGA	6 cut(s)	330, 902, 1247, 1258, 1296, 1754
Hpy166II	GTNNAC	4 cut(s)	507, 983, 1203, 2101
Hpy8I	GTNNAC	4 cut(s)	507, 983, 1203, 2101
HpyAV	CCTTC	5 cut(s)	145, 575, 1158, 1407, 1563
HpyCH4III	ACNGT	2 cut(s)	1931, 2094
HpyCH4IV	ACGT	4 cut(s)	571, 894, 1205, 1499
HpyF3I	CTNAG	6 cut(s)	161, 1158, 1251, 1404, 1470, 2022
HpySE526I	ACGT	4 cut(s)	571, 894, 1205, 1499
Hsp92II	CATG	7 cut(s)	384, 758, 785, 1670, 1703, 1736, 2004
HspAI	GCGC	3 cut(s)	561, 633, 1883
Ksp22I	TGATCA	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	1602
LmnI	GCTCC	3 cut(s)	914, 1301, 2029
Lsp1109I	GCAGC	8 cut(s)	622, 691, 1004, 1198, 1527, 1675, 1678, 1835
LweI	GCATC	7 cut(s)	88, 250, 597, 688, 1031, 1073, 1678
MaeI	CTAG	7 cut(s)	279, 489, 614, 812, 1137, 1356, 1706
MaeII	ACGT	4 cut(s)	571, 894, 1205, 1499
MaeIII	GTNAC	6 cut(s)	548, 740, 890, 1235, 1244, 1964
MfeI	CAATTG	2 cut(s)	602, 882
MflI	RGATCY	6 cut(s)	368, 384, 961, 1154, 1420, 2071
MhlI	GDGCHC	3 cut(s)	449, 509, 1453
MlsI	TGGCCA	1 cut(s)	944
MluNI	TGGCCA	1 cut(s)	944
MlyI	GAGTC	5 cut(s)	741, 1117, 1379, 1753, 2096
MmeI	TCCRAC	1 cut(s)	2148
Mox20I	TGGCCA	1 cut(s)	944
Mph1103I	ATGCAT	1 cut(s)	1066
MscI	TGGCCA	1 cut(s)	944
MseI	TTAA	5 cut(s)	771, 1080, 1410, 1577, 2167
MslI	CAYNNNNRTG	2 cut(s)	93, 1737
Msp20I	TGGCCA	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	1787
MspI	CCGG	3 cut(s)	1798, 1880, 1945
MspR9I	CCNGG	4 cut(s)	1315, 1756, 1798, 1799
MunI	CAATTG	2 cut(s)	602, 882
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	1315, 1756
NciI	CCSGG	2 cut(s)	1798, 1799
NlaIII	CATG	7 cut(s)	384, 758, 785, 1670, 1703, 1736, 2004
NlaIV	GGNNCC	4 cut(s)	145, 486, 963, 2073
NmuCI	GTSAC	5 cut(s)	548, 890, 1235, 1244, 1964
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	1670
PaeI	GCATGC	1 cut(s)	1670
PagI	TCATGA	1 cut(s)	1699
PciSI	GCTCTTC	1 cut(s)	1602
PctI	GAATGC	1 cut(s)	88
PflMI	CCANNNNNTGG	3 cut(s)	365, 836, 2141
PfoI	TCCNGGA	1 cut(s)	1313
PkrI	GCNGC	9 cut(s)	333, 612, 681, 994, 1188, 1517, 1665, 1693, 1825
PleI	GAGTC	5 cut(s)	741, 1116, 1378, 1753, 2096
PpsI	GAGTC	5 cut(s)	741, 1116, 1378, 1753, 2096
PpuMI	RGGWCCY	2 cut(s)	143, 484
PshAI	GACNNNNGTC	1 cut(s)	1242
Psp5II	RGGWCCY	2 cut(s)	143, 484
Psp6I	CCWGG	2 cut(s)	1313, 1754
PspFI	CCCAGC	1 cut(s)	1783
PspGI	CCWGG	2 cut(s)	1313, 1754
PspN4I	GGNNCC	4 cut(s)	145, 486, 963, 2073
PspPI	GGNCC	6 cut(s)	143, 484, 827, 1394, 1766, 1874
PspPPI	RGGWCCY	2 cut(s)	143, 484
PsrI	GAACNNNNNNTAC	2 cut(s)	1910, 1942
PstI	CTGCAG	2 cut(s)	994, 1188
PstNI	CAGNNNCTG	2 cut(s)	347, 1232
PsuI	RGATCY	6 cut(s)	368, 384, 961, 1154, 1420, 2071
PvuII	CAGCTG	1 cut(s)	1787
RsaI	GTAC	4 cut(s)	717, 780, 1434, 1928
RsaNI	GTAC	4 cut(s)	716, 779, 1433, 1927
RseI	CAYNNNNRTG	2 cut(s)	93, 1737
SapI	GCTCTTC	1 cut(s)	1602
SaqAI	TTAA	5 cut(s)	771, 1080, 1410, 1577, 2167
SatI	GCNGC	9 cut(s)	332, 611, 680, 993, 1187, 1516, 1664, 1692, 1824
Sau96I	GGNCC	6 cut(s)	143, 484, 827, 1394, 1766, 1874
ScaI	AGTACT	1 cut(s)	1928
SchI	GAGTC	5 cut(s)	741, 1117, 1379, 1753, 2096
ScrFI	CCNGG	4 cut(s)	1315, 1756, 1798, 1799
SduI	GDGCHC	3 cut(s)	449, 509, 1453
SfaNI	GCATC	7 cut(s)	88, 250, 597, 688, 1031, 1073, 1678
SfcI	CTRYAG	3 cut(s)	990, 1184, 2149
SgrAI	CRCCGGYG	1 cut(s)	1879
SinI	GGWCC	3 cut(s)	143, 484, 1394
SmaI	CCCGGG	1 cut(s)	1799
SmiMI	CAYNNNNRTG	2 cut(s)	93, 1737
SmlI	CTYRAG	2 cut(s)	736, 1452
SmoI	CTYRAG	2 cut(s)	736, 1452
SphI	GCATGC	1 cut(s)	1670
SsiI	CCGC	5 cut(s)	331, 525, 846, 959, 1619
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	7 cut(s)	279, 489, 614, 812, 1137, 1356, 1706
StyD4I	CCNGG	4 cut(s)	1313, 1754, 1796, 1797
TaaI	ACNGT	2 cut(s)	1931, 2094
TaiI	ACGT	4 cut(s)	574, 897, 1208, 1502
TaqI	TCGA	5 cut(s)	1111, 1344, 1417, 2018, 2067
TatI	WGTACW	3 cut(s)	715, 778, 1926
TauI	GCSGC	1 cut(s)	334
Tru1I	TTAA	5 cut(s)	771, 1080, 1410, 1577, 2167
Tru9I	TTAA	5 cut(s)	771, 1080, 1410, 1577, 2167
TscAI	CASTG	3 cut(s)	64, 837, 952
TseFI	GTSAC	5 cut(s)	548, 890, 1235, 1244, 1964
TseI	GCWGC	8 cut(s)	610, 679, 992, 1186, 1515, 1663, 1691, 1823
Tsp45I	GTSAC	5 cut(s)	548, 890, 1235, 1244, 1964
TspDTI	ATGAA	7 cut(s)	189, 789, 798, 948, 1656, 1851, 2045
TspMI	CCCGGG	1 cut(s)	1797
TspRI	CASTG	3 cut(s)	64, 837, 952
Van91I	CCANNNNNTGG	3 cut(s)	365, 836, 2141
VneI	GTGCAC	1 cut(s)	505
VpaK11BI	GGWCC	3 cut(s)	143, 484, 1394
XapI	RAATTY	6 cut(s)	17, 196, 362, 767, 967, 1979
XceI	RCATGY	1 cut(s)	1670
XmaI	CCCGGG	1 cut(s)	1797
XmiI	GTMKAC	1 cut(s)	1202
XspI	CTAG	7 cut(s)	279, 489, 614, 812, 1137, 1356, 1706
ZrmI	AGTACT	1 cut(s)	1928
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.