Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

2965875 .. 2966330

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTCAGCTACGATCACATGGTAGTGGTGATTCGCAGACCTGGACTCACGGTCTTAACGGAGATGTCCCAGCTGTTGATTCCCGGGTAGAAGTTGGCAGGAAGAGGGCAGCAAACACAAACGAAGAGATCTATGATTGTGACAGCACACTAATAAATGGGCCACCATTGCTTATTTCTAATGGCTCATACTGCTTGGACGAGAACTTTGAGTACTGTGTGAAAATAATCCGATGGCTGGAATGTGAGCGTCATATTACACAGGAATTCAGGTTGAAATTGCTAACATGGTTTAGTTTGAGATCGACTGAGCAGGAACGTAGGGTGGTCAATACCTTTATTCAGACTATGATTGATGATCCAAGTAGCTTGGCAGGACAGTTAGTTGACTCATTTTCAGATATCGTATCCAACAAGAGGCCACGAAATGGATTCTGTAGTAAGCTGTGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

152

Amino Acids

17.31

Weight (kDa)

5.79

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIN3_C	PF23380	67 - 140	6.2e-41	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	428
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	238, 417, 428
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	4 cut(s)	10, 74, 369, 445
AluI	AGCT	4 cut(s)	10, 74, 369, 445
AlwI	GGATC	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	2 cut(s)	161, 419
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	266
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	2 cut(s)	85, 86
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	418
BcnI	CCSGG	2 cut(s)	85, 86
BfmI	CTRYAG	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	418
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	3 cut(s)	43, 85, 86
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	3 cut(s)	43, 85, 86
BpuMI	CCSGG	2 cut(s)	85, 86
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 417, 428
Bse3DI	GCAATG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	238, 417, 428
BseMI	GCAATG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	70
BshFI	GGCC	2 cut(s)	163, 421
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	238, 417, 428
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	163, 421
BsoBI	CYCGRG	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	14, 129, 302, 358
BspANI	GGCC	2 cut(s)	163, 421
BspCNI	CTCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	4 cut(s)	14, 129, 302, 358
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	3 cut(s)	53, 218, 381
Bst6I	CTCTTC	2 cut(s)	98, 120
BstDEI	CTNAG	1 cut(s)	309
BstKTI	GATC	4 cut(s)	17, 132, 305, 361
BstMBI	GATC	4 cut(s)	14, 129, 302, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 192
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	41, 83, 84
BstSFI	CTRYAG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	163, 421
Cfr13I	GGNCC	1 cut(s)	161
Cfr9I	CCCGGG	1 cut(s)	84
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	20, 288
CviJI	RGCY	8 cut(s)	10, 74, 163, 186, 238, 369, 421, 445
CviKI_1	RGCY	8 cut(s)	10, 74, 163, 186, 238, 369, 421, 445
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	4 cut(s)	16, 131, 304, 360
DpnII	GATC	4 cut(s)	14, 129, 302, 358
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	98, 120
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EarI	CTCTTC	2 cut(s)	98, 120
Eco32I	GATATC	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	403
FaeI	CATG	2 cut(s)	23, 291
FaiI	YATR	6 cut(s)	21, 135, 190, 255, 289, 350
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	2 cut(s)	19, 287
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	163, 421
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	23, 291
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	5 cut(s)	32, 46, 80, 389, 432
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	3 cut(s)	233, 345, 400
Hpy8I	GTNNAC	1 cut(s)	388
HpyCH4III	ACNGT	3 cut(s)	53, 218, 381
HpyCH4IV	ACGT	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 192
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	2 cut(s)	23, 291
Kzo9I	GATC	4 cut(s)	14, 129, 302, 358
Lsp1109I	GCAGC	1 cut(s)	122
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	16, 131, 304, 360
MboI	GATC	4 cut(s)	14, 129, 302, 358
MboII	GAAGA	2 cut(s)	115, 137
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	2 cut(s)	266, 278
MlyI	GAGTC	2 cut(s)	40, 383
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	2 cut(s)	99, 411
MseI	TTAA	2 cut(s)	57, 454
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	3 cut(s)	43, 85, 86
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	169, 192
NciI	CCSGG	2 cut(s)	85, 86
NdeII	GATC	4 cut(s)	14, 129, 302, 358
NlaIII	CATG	2 cut(s)	23, 291
NmuCI	GTSAC	1 cut(s)	140
PfeI	GAWTC	3 cut(s)	32, 80, 432
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	40, 383
PpsI	GAGTC	2 cut(s)	40, 383
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	161
PsrI	GAACNNNNNNTAC	2 cut(s)	197, 229
PsuI	RGATCY	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	57, 454
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	4 cut(s)	14, 129, 302, 358
Sau96I	GGNCC	1 cut(s)	161
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	2 cut(s)	40, 383
ScrFI	CCNGG	3 cut(s)	43, 85, 86
SetI	ASST	8 cut(s)	12, 44, 76, 275, 322, 338, 371, 447
SfcI	CTRYAG	1 cut(s)	436
SmaI	CCCGGG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	266, 278
StyD4I	CCNGG	3 cut(s)	41, 83, 84
TaaI	ACNGT	3 cut(s)	53, 218, 381
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	305
TasI	AATT	2 cut(s)	266, 278
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	32, 80, 432
Tru1I	TTAA	2 cut(s)	57, 454
Tru9I	TTAA	2 cut(s)	57, 454
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	75
TspMI	CCCGGG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	266
XmaI	CCCGGG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.