Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

4152577 .. 4157414

Gene Structure 4838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG056000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGGATTCGGAAGATAAGTTTCTAGCTAAAGTTTCTGGAGTTCAAAGTCTCTCTTCCAGTGTGCAAAGCACTCCCGAGAAGAATGGGCATTCAGATGATGCTTCAAGAAGTCCAGAGCTCCTTCAACAGTTTCTGAAATCTGGTCCCAAGAAGGAACTTCTTCGGGCATGTGTTGACAAGGACAAGAAAAATTTGACTTCCTCAAAAAACAAGATGGCTGAACTTTTGAAGACTACTAACAAGACAAATAAGAAGCAGGAGTCAAAAAAAGCTTCTTCTAGTCCAAATAATCATCCTCCTAAAAAGCAATCCAGAAAGGGGGAAAATCCCATCCGACTCTCACCGGCTTCTGAGCAGTCTCCAGATTTTGGATGTTCGAACTCATGGATCTGTAAAAACTCTGCTTGTAGAGCTGTTCTATCCATAGACAACACATTCTGCAAGAGATGCTCCTGCTGTATTTGTCATTTGTTTGATGACAACAAGGACCCAAGTCTTTGGTTAGTATGCACATCTGAATCTGGTGAGGGAGATTCCTGTGGGTTATCTTGTCACATTGACTGCGCGCTTAGACGTGAAAAGGTGGGAGTTGTTGATCTTGGGCAATTGATGCAGCTAGATGGTAGTTATTGTTGTGCTTCATGTGGTAAAGTTTCTGGGATACTTGGGATTTGGAAGAAGCAGCTACTTGTAGCAAAGGATGCTCGACGTGTTGATGTTCTTTGGGACAGGATATGCTTGAGTTATAGGCTTCTGGATGGGACTTCAAGGTTTAAAGAACTTCATGATATTGTGAAGGAAGCGAAGACTAAACTCGAGACAGAACTAGGTCCAATTAATGGAGATTCAGGAACAATGGTACGTGGGATAGTCAGCAGACTATCTATCGCTGGTGATGTGCTAAAACTCTGCTCTCTTGCAATTGAGAAAGCTGATGAATGGTTGGCCAATGTTTCTAGTGCAGACCCAAACAGAGAGGGTTCACTTCCAGCTGCCTGCAAGTTTCTCTTTGAGGAAGTAACACCTTCATCTGTTGTGATTATATTGATCGAACTGTCTAATGCGTCATCTGATGACATCAAGGGATACAAGCTCTGGTATTACAAGAGCAGAGAAGAATCACACACAAAAGAGCCTACTTGTACCTTTTCAAGATCTCAGAGAAGAATTTTGATCTCCAATCTGCAGCCTTGCACAGAGTATACATTTAGGATAATATCTTATACTGAGGCTGGTGACTTGGGTCACTCTGAGGCAAAGTGTTTCACCAAAAGTGTTGAGATAATTCACAAAAACCCGGATTCACCGGTCTGCAGGAATCATAAGAAAGAGAATCCTGTCATTGAGGCAAATTCTAGTGCCATGAGGGAGTCTGAAACTACAACAGCAGTTGTGCCTTCTTCTGAATTTAAAGTTCGTGATCTTGGAAAGATACTTCGTCTGGCTCAGGCTCAACAGAAAGGCTCCTTGGAGGGCTTTTGTAGTGCCAACAAAGAAAAATGTTGTGCACCAAGCAACCCGATAAAAACTGAAACTCTACAAGAAGAGTTGCCTTCTGTTCCACGGGGGCTTGACTTAAATGTTCTTTCAATGCCCGATCTGAATGAAGAGCTAACCCCGCCCTTTGAGTCCTCCAGAGATGAAGATAATGGATGCACTTTGCAGCAGGCTGTGGAGGCAGATGATGATGCTGCTTCTCATGACATGGTGAAGAACGGCCTAGCAAGATCACATGGTAGTGGTGATTCACAGACCTGGACTCATGGGATTACTGGAGATGTCCCTGCTGTCGATTCTCGGGCAGAAATTTGCAGGAAGAGGAAGGGAAACTCAAACGAAGAGACCCATGATTGTGACAGCACCCTGATAAATGGGCCACCATTGCAAAATGGTTCTTGTTGCTTGGACGAGAACTTTGAGTACTGTGTGAAAATAATCAGGTGGCTGGAATGCGAGGGTCACCTTACGGAGGAATTCAGATTGAAGTTGCTAACATGGTTCAGTTTGAGATCAACTGAGCAAGAGCGTAGGGTGGTCAACACCTTTATTCAAACTATGATTGATGATCCAAGTAGCTTGGCAGGACAGTTAGTTGACTCCTTTGCAGATATCATATCCCGCAAGAGGCAACGGAACGGATTCTGCAGTAAGCTGTGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

720

Amino Acids

79.82

Weight (kDa)

6.36

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	131 - 249	1.5e-32	PHD - plant homeodomain finger protein
Fn3_VIN3	PF23376	336 - 423	3.3e-32	VIN3-like, fibronectin type-III domain
fn3	PF00041	337 - 417	9.2e-07	Fibronectin type III domain
VIN3_C	PF23380	636 - 709	1.5e-39	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	368, 839
AccI	GTMKAC	1 cut(s)	1202
AccII	CGCG	1 cut(s)	566
AciI	CCGC	2 cut(s)	1619, 2119
AclWI	GGATC	2 cut(s)	395, 2060
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	6 cut(s)	190, 1167, 1351, 1406, 1806, 1973
AfaI	GTAC	3 cut(s)	861, 1144, 1922
AfiI	CCNNNNNNNGG	5 cut(s)	318, 368, 839, 1969, 2124
AflIII	ACRYGT	1 cut(s)	709
AgeI	ACCGGT	1 cut(s)	1306
AgsI	TTSAA	9 cut(s)	44, 105, 125, 229, 768, 1152, 1590, 1984, 2051
AjiI	CACGTC	2 cut(s)	575, 710
AjnI	CCWGG	1 cut(s)	1754
AjuI	GAANNNNNNNTTGG	2 cut(s)	1451, 1483
Alw21I	GWGCWC	2 cut(s)	120, 1510
Alw26I	GTCTC	4 cut(s)	53, 363, 812, 1835
Alw44I	GTGCAC	1 cut(s)	1506
AlwI	GGATC	2 cut(s)	395, 2060
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	3 cut(s)	74, 815, 1797
AoxI	GGCC	3 cut(s)	945, 1717, 1874
ApaLI	GTGCAC	1 cut(s)	1506
ApeKI	GCWGC	6 cut(s)	613, 682, 992, 1186, 1663, 1691
ApoI	RAATTY	6 cut(s)	190, 1167, 1351, 1406, 1806, 1973
ArsI	GACNNNNNNTTYG	2 cut(s)	1898, 1930
AseI	ATTAAT	1 cut(s)	837
AsiGI	ACCGGT	1 cut(s)	1306
Asp700I	GAANNNNTTC	2 cut(s)	159, 2138
AspLEI	GCGC	2 cut(s)	566, 568
AspS9I	GGNCC	4 cut(s)	143, 487, 830, 1874
AsuC2I	CCSGG	1 cut(s)	1298
AsuHPI	GGTGA	9 cut(s)	333, 536, 905, 1247, 1258, 1296, 1720, 1754, 1952
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	3 cut(s)	74, 815, 1797
AvaII	GGWCC	3 cut(s)	143, 487, 830
BaeGI	GKGCMC	1 cut(s)	1510
BalI	TGGCCA	1 cut(s)	947
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	2 cut(s)	236, 812
Bbv12I	GWGCWC	2 cut(s)	120, 1510
BbvI	GCAGC	6 cut(s)	625, 694, 979, 1198, 1675, 1678
BccI	CCATC	4 cut(s)	208, 338, 614, 752
BceAI	ACGGC	1 cut(s)	1732
BciT130I	CCWGG	1 cut(s)	1756
BciVI	GTATCC	2 cut(s)	654, 1079
BcnI	CCSGG	1 cut(s)	1298
BcoDI	GTCTC	4 cut(s)	53, 363, 812, 1835
BfaI	CTAG	7 cut(s)	23, 279, 617, 827, 957, 1356, 1721
BfmI	CTRYAG	3 cut(s)	1184, 1312, 2143
BfuI	GTATCC	2 cut(s)	654, 1079
BglII	AGATCT	1 cut(s)	1154
BisI	GCNGC	6 cut(s)	614, 683, 993, 1187, 1664, 1692
BlsI	GCNGC	6 cut(s)	615, 684, 994, 1188, 1665, 1693
BmcAI	AGTACT	1 cut(s)	1922
Bme1390I	CCNGG	2 cut(s)	1298, 1756
Bme18I	GGWCC	3 cut(s)	143, 487, 830
BmeT110I	CYCGRG	3 cut(s)	74, 815, 1797
BmgBI	CACGTC	2 cut(s)	575, 710
BmgT120I	GGNCC	4 cut(s)	143, 487, 830, 1874
BmiI	GGNNCC	3 cut(s)	145, 489, 1465
BmrFI	CCNGG	2 cut(s)	1298, 1756
BmsI	GCATC	6 cut(s)	88, 437, 600, 691, 1643, 1678
BoxI	GACNNNNGTC	2 cut(s)	492, 1242
BpiI	GAAGAC	2 cut(s)	236, 812
BpmI	CTGGAG	4 cut(s)	57, 345, 1618, 1794
Bpu10I	CCTNAGC	1 cut(s)	1446
Bpu14I	TTCGAA	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	760
BpuMI	CCSGG	1 cut(s)	1298
BsaAI	YACGTR	1 cut(s)	863
BsaI	GGTCTC	1 cut(s)	1835
BsaJI	CCNNGG	2 cut(s)	1467, 1562
BsaWI	WCCGGW	1 cut(s)	1306
Bsc4I	CCNNNNNNNGG	5 cut(s)	318, 368, 839, 1969, 2124
Bse118I	RCCGGY	2 cut(s)	343, 1306
Bse1I	ACTGG	2 cut(s)	57, 1777
Bse3DI	GCAATG	1 cut(s)	1880
BseBI	CCWGG	1 cut(s)	1756
BseDI	CCNNGG	2 cut(s)	1467, 1562
BseGI	GGATG	6 cut(s)	292, 330, 377, 706, 763, 1658
BseLI	CCNNNNNNNGG	5 cut(s)	318, 368, 839, 1969, 2124
BseMI	GCAATG	1 cut(s)	1880
BseMII	CTCAG	6 cut(s)	342, 1172, 1218, 1242, 1460, 2007
BseNI	ACTGG	2 cut(s)	57, 1777
BsePI	GCGCGC	1 cut(s)	564
BseSI	GKGCMC	1 cut(s)	1510
BseXI	GCAGC	6 cut(s)	625, 694, 979, 1198, 1675, 1678
BsgI	GTGCAG	1 cut(s)	981
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	3 cut(s)	947, 1719, 1876
BshTI	ACCGGT	1 cut(s)	1306
BsiHKAI	GWGCWC	2 cut(s)	120, 1510
BsiHKCI	CYCGRG	3 cut(s)	74, 815, 1797
BsiSI	CCGG	3 cut(s)	344, 1298, 1307
BslFI	GGGAC	4 cut(s)	129, 740, 775, 1766
BslI	CCNNNNNNNGG	5 cut(s)	318, 368, 839, 1969, 2124
BsmAI	GTCTC	4 cut(s)	53, 363, 812, 1835
BsmFI	GGGAC	4 cut(s)	129, 740, 775, 1766
BsmI	GAATGC	2 cut(s)	88, 1955
BsnI	GGCC	3 cut(s)	947, 1719, 1876
Bso31I	GGTCTC	1 cut(s)	1835
BsoBI	CYCGRG	3 cut(s)	74, 815, 1797
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	120, 1510
BspACI	CCGC	2 cut(s)	1619, 2119
BspANI	GGCC	3 cut(s)	947, 1719, 1876
BspCNI	CTCAG	6 cut(s)	343, 1171, 1219, 1243, 1459, 2008
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	2 cut(s)	784, 1699
BspLI	GGNNCC	3 cut(s)	145, 489, 1465
BspMAI	CTGCAG	3 cut(s)	1188, 1316, 2147
BspPI	GGATC	2 cut(s)	395, 2060
BspQI	GCTCTTC	1 cut(s)	1602
BspT104I	TTCGAA	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	1835
BsrDI	GCAATG	1 cut(s)	1880
BsrFI	RCCGGY	2 cut(s)	343, 1306
BsrI	ACTGG	2 cut(s)	57, 1777
BssAI	RCCGGY	2 cut(s)	343, 1306
BssECI	CCNNGG	2 cut(s)	1467, 1562
BssHII	GCGCGC	1 cut(s)	564
BssNAI	GTATAC	1 cut(s)	1203
BssT1I	CCWWGG	1 cut(s)	1467
Bst1107I	GTATAC	1 cut(s)	1203
Bst2UI	CCWGG	1 cut(s)	1756
Bst4CI	ACNGT	4 cut(s)	129, 1056, 1925, 2088
Bst6I	CTCTTC	5 cut(s)	58, 1539, 1602, 1811, 1833
BstAPI	GCANNNNNTGC	3 cut(s)	447, 610, 701
BstBAI	YACGTR	1 cut(s)	863
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	566, 997, 1668
BstDEI	CTNAG	7 cut(s)	351, 569, 1158, 1227, 1251, 1446, 2016
BstDSI	CCRYGG	1 cut(s)	1562
BstEII	GGTNACC	1 cut(s)	1958
BstENI	CCTNNNNNAGG	1 cut(s)	1967
BstF5I	GGATG	6 cut(s)	292, 330, 377, 706, 763, 1658
BstFNI	CGCG	1 cut(s)	566
BstHHI	GCGC	2 cut(s)	566, 568
BstMAI	GTCTC	4 cut(s)	53, 363, 812, 1835
BstMWI	GCNNNNNNNGC	7 cut(s)	410, 447, 610, 701, 1618, 1676, 1882
BstNI	CCWGG	1 cut(s)	1756
BstNSI	RCATGY	1 cut(s)	171
BstPAI	GACNNNNGTC	2 cut(s)	492, 1242
BstPI	GGTNACC	1 cut(s)	1958
BstSCI	CCNGG	2 cut(s)	1296, 1754
BstSFI	CTRYAG	3 cut(s)	1184, 1312, 2143
BstSLI	GKGCMC	1 cut(s)	1510
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	6 cut(s)	625, 694, 979, 1198, 1675, 1678
BstV2I	GAAGAC	2 cut(s)	236, 812
BstX2I	RGATCY	2 cut(s)	387, 1154
BstXI	CCANNNNNNTGG	1 cut(s)	498
BstYI	RGATCY	2 cut(s)	387, 1154
BstZ17I	GTATAC	1 cut(s)	1203
BsuI	GTATCC	2 cut(s)	654, 1079
BsuRI	GGCC	3 cut(s)	947, 1719, 1876
BtgI	CCRYGG	1 cut(s)	1562
BtrI	CACGTC	2 cut(s)	575, 710
BtsCI	GGATG	6 cut(s)	292, 330, 377, 706, 763, 1658
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	566, 997, 1668
CaiI	CAGNNNCTG	1 cut(s)	133
CciI	TCATGA	2 cut(s)	784, 1699
CfoI	GCGC	2 cut(s)	566, 568
Cfr10I	RCCGGY	2 cut(s)	343, 1306
Cfr13I	GGNCC	4 cut(s)	143, 487, 830, 1874
CseI	GACGC	1 cut(s)	1053
Csp6I	GTAC	3 cut(s)	860, 1143, 1921
CspAI	ACCGGT	1 cut(s)	1306
CviQI	GTAC	3 cut(s)	860, 1143, 1921
DdeI	CTNAG	7 cut(s)	351, 569, 1158, 1227, 1251, 1446, 2016
DraI	TTTAAA	2 cut(s)	775, 1411
EaeI	YGGCCR	1 cut(s)	945
Eam1104I	CTCTTC	5 cut(s)	58, 1539, 1602, 1811, 1833
EarI	CTCTTC	5 cut(s)	58, 1539, 1602, 1811, 1833
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	1467
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	1835
Eco32I	GATATC	1 cut(s)	2110
Eco47I	GGWCC	3 cut(s)	143, 487, 830
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	3 cut(s)	74, 815, 1797
Eco91I	GGTNACC	1 cut(s)	1958
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	1967
EcoO109I	RGGNCCY	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	1958
EcoRI	GAATTC	1 cut(s)	1973
EcoRII	CCWGG	1 cut(s)	1754
EcoRV	GATATC	1 cut(s)	2110
EcoT14I	CCWWGG	1 cut(s)	1467
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	1467
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 992, 1024
FaqI	GGGAC	4 cut(s)	129, 740, 775, 1766
FauI	CCCGC	2 cut(s)	1626, 2126
FblI	GTMKAC	1 cut(s)	1202
Fnu4HI	GCNGC	6 cut(s)	614, 683, 993, 1187, 1664, 1692
FokI	GGATG	6 cut(s)	279, 317, 384, 713, 770, 1665
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	6 cut(s)	614, 683, 993, 1187, 1664, 1692
FspBI	CTAG	7 cut(s)	23, 279, 617, 827, 957, 1356, 1721
GlaI	GCGC	2 cut(s)	565, 567
GluI	GCNGC	6 cut(s)	614, 683, 993, 1187, 1664, 1692
GsuI	CTGGAG	4 cut(s)	57, 345, 1618, 1794
HaeIII	GGCC	3 cut(s)	947, 1719, 1876
HapII	CCGG	3 cut(s)	344, 1298, 1307
HgaI	GACGC	1 cut(s)	1053
HhaI	GCGC	2 cut(s)	566, 568
Hin6I	GCGC	2 cut(s)	564, 566
HinP1I	GCGC	2 cut(s)	564, 566
HincII	GTYRAC	3 cut(s)	175, 2038, 2095
HindII	GTYRAC	3 cut(s)	175, 2038, 2095
HindIII	AAGCTT	1 cut(s)	270
HpaII	CCGG	3 cut(s)	344, 1298, 1307
HphI	GGTGA	9 cut(s)	333, 536, 905, 1247, 1258, 1296, 1720, 1754, 1952
Hpy166II	GTNNAC	6 cut(s)	175, 983, 1203, 1508, 2038, 2095
Hpy8I	GTNNAC	6 cut(s)	175, 983, 1203, 1508, 2038, 2095
Hpy99I	CGWCG	1 cut(s)	711
HpyAV	CCTTC	7 cut(s)	131, 145, 790, 1035, 1407, 1563, 1816
HpyCH4III	ACNGT	4 cut(s)	129, 1056, 1925, 2088
HpyCH4IV	ACGT	3 cut(s)	574, 709, 862
HpyF10VI	GCNNNNNNNGC	7 cut(s)	410, 447, 610, 701, 1618, 1676, 1882
HpyF3I	CTNAG	7 cut(s)	351, 569, 1158, 1227, 1251, 1446, 2016
HpySE526I	ACGT	3 cut(s)	574, 709, 862
HspAI	GCGC	2 cut(s)	564, 566
LguI	GCTCTTC	1 cut(s)	1602
LmnI	GCTCC	3 cut(s)	123, 455, 1469
Lsp1109I	GCAGC	6 cut(s)	625, 694, 979, 1198, 1675, 1678
LweI	GCATC	6 cut(s)	88, 437, 600, 691, 1643, 1678
MaeI	CTAG	7 cut(s)	23, 279, 617, 827, 957, 1356, 1721
MaeII	ACGT	3 cut(s)	574, 709, 862
MaeIII	GTNAC	6 cut(s)	551, 1018, 1235, 1244, 1853, 1958
MfeI	CAATTG	2 cut(s)	605, 921
MflI	RGATCY	2 cut(s)	387, 1154
MhlI	GDGCHC	2 cut(s)	120, 1510
MlsI	TGGCCA	1 cut(s)	947
MluNI	TGGCCA	1 cut(s)	947
MlyI	GAGTC	6 cut(s)	269, 330, 1379, 1637, 1753, 2090
MmeI	TCCRAC	1 cut(s)	358
Mox20I	TGGCCA	1 cut(s)	947
MroXI	GAANNNNTTC	2 cut(s)	159, 2138
MscI	TGGCCA	1 cut(s)	947
MseI	TTAA	5 cut(s)	774, 837, 1410, 1577, 2161
MslI	CAYNNNNRTG	3 cut(s)	93, 1737, 1851
Msp20I	TGGCCA	1 cut(s)	947
MspA1I	CMGCKG	1 cut(s)	992
MspI	CCGG	3 cut(s)	344, 1298, 1307
MspR9I	CCNGG	2 cut(s)	1298, 1756
MunI	CAATTG	2 cut(s)	605, 921
Mva1269I	GAATGC	2 cut(s)	88, 1955
MvaI	CCWGG	1 cut(s)	1756
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	7 cut(s)	410, 447, 610, 701, 1618, 1676, 1882
NciI	CCSGG	1 cut(s)	1298
NlaIV	GGNNCC	3 cut(s)	145, 489, 1465
NmuCI	GTSAC	5 cut(s)	551, 1235, 1244, 1853, 1958
NspI	RCATGY	1 cut(s)	171
NspV	TTCGAA	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	815
PagI	TCATGA	2 cut(s)	784, 1699
PauI	GCGCGC	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	1602
PctI	GAATGC	2 cut(s)	88, 1955
PdmI	GAANNNNTTC	2 cut(s)	159, 2138
PflMI	CCANNNNNTGG	2 cut(s)	368, 839
PinAI	ACCGGT	1 cut(s)	1306
PkrI	GCNGC	6 cut(s)	615, 684, 994, 1188, 1665, 1693
PleI	GAGTC	6 cut(s)	268, 330, 1378, 1636, 1753, 2090
PpsI	GAGTC	6 cut(s)	268, 330, 1378, 1636, 1753, 2090
Ppu21I	YACGTR	1 cut(s)	863
PpuMI	RGGWCCY	1 cut(s)	487
PshAI	GACNNNNGTC	2 cut(s)	492, 1242
PshBI	ATTAAT	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	1754
PspEI	GGTNACC	1 cut(s)	1958
PspGI	CCWGG	1 cut(s)	1754
PspN4I	GGNNCC	3 cut(s)	145, 489, 1465
PspPI	GGNCC	4 cut(s)	143, 487, 830, 1874
PspPPI	RGGWCCY	1 cut(s)	487
PsrI	GAACNNNNNNTAC	2 cut(s)	1904, 1936
PstI	CTGCAG	3 cut(s)	1188, 1316, 2147
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	387, 1154
PteI	GCGCGC	1 cut(s)	564
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	3 cut(s)	861, 1144, 1922
RsaNI	GTAC	3 cut(s)	860, 1143, 1921
RseI	CAYNNNNRTG	3 cut(s)	93, 1737, 1851
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	1602
SaqAI	TTAA	5 cut(s)	774, 837, 1410, 1577, 2161
SatI	GCNGC	6 cut(s)	614, 683, 993, 1187, 1664, 1692
Sau96I	GGNCC	4 cut(s)	143, 487, 830, 1874
ScaI	AGTACT	1 cut(s)	1922
SchI	GAGTC	6 cut(s)	269, 330, 1379, 1637, 1753, 2090
ScrFI	CCNGG	2 cut(s)	1298, 1756
SduI	GDGCHC	2 cut(s)	120, 1510
SfaNI	GCATC	6 cut(s)	88, 437, 600, 691, 1643, 1678
SfcI	CTRYAG	3 cut(s)	1184, 1312, 2143
Sfr274I	CTCGAG	1 cut(s)	815
SfuI	TTCGAA	1 cut(s)	377
SinI	GGWCC	3 cut(s)	143, 487, 830
SlaI	CTCGAG	1 cut(s)	815
SmiMI	CAYNNNNRTG	3 cut(s)	93, 1737, 1851
SmlI	CTYRAG	2 cut(s)	739, 815
SmoI	CTYRAG	2 cut(s)	739, 815
SsiI	CCGC	2 cut(s)	1619, 2119
SspMI	CTAG	7 cut(s)	23, 279, 617, 827, 957, 1356, 1721
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	1296, 1754
StyI	CCWWGG	1 cut(s)	1467
TaaI	ACNGT	4 cut(s)	129, 1056, 1925, 2088
TaiI	ACGT	3 cut(s)	577, 712, 865
TaqI	TCGA	5 cut(s)	377, 706, 816, 1050, 1791
TatI	WGTACW	1 cut(s)	1920
Tru1I	TTAA	5 cut(s)	774, 837, 1410, 1577, 2161
Tru9I	TTAA	5 cut(s)	774, 837, 1410, 1577, 2161
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	5 cut(s)	551, 1235, 1244, 1853, 1958
TseI	GCWGC	6 cut(s)	613, 682, 992, 1186, 1663, 1691
Tsp45I	GTSAC	5 cut(s)	551, 1235, 1244, 1853, 1958
TspDTI	ATGAA	6 cut(s)	630, 773, 951, 1017, 1620, 1656
TspGWI	ACGGA	3 cut(s)	1982, 2146, 2151
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	2 cut(s)	368, 839
VneI	GTGCAC	1 cut(s)	1506
VpaK11BI	GGWCC	3 cut(s)	143, 487, 830
VspI	ATTAAT	1 cut(s)	837
XagI	CCTNNNNNAGG	1 cut(s)	1967
XapI	RAATTY	6 cut(s)	190, 1167, 1351, 1406, 1806, 1973
XceI	RCATGY	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	1202
XmnI	GAANNNNTTC	2 cut(s)	159, 2138
XspI	CTAG	7 cut(s)	23, 279, 617, 827, 957, 1356, 1721
ZrmI	AGTACT	1 cut(s)	1922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.