Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

4553439 .. 4558023

Gene Structure 4585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1056200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGGAATTAGATGACAAATTTGTTGGTAAAGTTTCTGGTGTTCAAAGCCTCTCCTCCAGTGTGCAAAGCACTCCTGAGAAGAATGGGCATTCAGACGATGCTTCACGAAGTCCAGAGCTTCTTCAAGAGTTTATGAAATTGGGTCCCAAGAAGGAACTCCTTCGAACTTGCTTTGAAAAGGACAAGAAAAACTTGAATTCATCAAAAAATAAAATGGCTGAACCTTTGAAGACTTCAAAGACAAGTAAGAAGCAGGATTCAAAGAAAGCTTCTTCTAGTCCAAATAATCTTCCTAAAAAGCAAGCCAGAAAGGGGGAAAATCCTATGCGTCTCTCATCAGCTTCTGATCAGTCTCCAGACTTTGGATCTTCAAGCTCATGGATCTGTAAAAACTCTGCTTGTAGAGCTGTTCTATCCATAGATGACACATTTTGCAGGAGGTGCTCTTGCTGTATCTGTCATTTGTTTGATGACAACAAGGACCCTAGTCTTTGGTTAGTGTGCACATCTGAATCTGGTGGCGGAGATTCCTGTGGGTTGTCTTGTCACATCGAGTGCGCCCTTCAACATGCAAAGGCAGGAGTTGTTGATCTTGGGCAATTGATGCAGCTAGATGGTAGTTACTGTTGCGCTACTTGTGGTAAAGTTTCTGGGATACTTGGAAGTTGGAAGAAGCAGCTCATTGTGGCAAAGGATGCTCGCCGTGTTGATGTACTCTGTTATAGGATATACTTGAGTTACAGACTCCTGGATGGGACTTCAAGATTTAAAGAATTACATGAGATTGTGAAGGAAGCAAAGTCTAAACTAGAGAGAGAAGTTGGCCCAGTAAATGGCGTTTCTGCAAAGATGGCACGAGGGATAGTCAGTAGACTATCAATTGCTGGTGACATGCTGAAACTCTGCTCCCTTGCAATTGAGAAAGCAGATGAATGGCTGGCCAACGTTTCTAATGTGGATCCAAATTGCCGAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTCTTTTTCAAGAAGTAGCATCATCCTCTGTTGTGATTATATTGATTGAATTGTCTAATGCATCATCTGACAATATTAAGGGCTACAAGCTCTGGTATTACAAGAGCGGAGAAGAACTGCACGCAAAAGAGCCTACTTGTATCTTTCCAAAATCTCAGAGAAGGATTTTGATATCCAATCTGCAGCCTTGCACAGGGTATACGTTTAGGATAATATCTTATACGGAGGCTGGTGACTTGGGTCACTCAGAGGCCAAGTGTTTCACCAAGAGTGTTGAGATAATTCGCAGAAACCCCATTTCACCGGTTTCTGAGAATCCTAAGAAAGAGAATCCGATCATCGAAGCAAATTCTAGTGGCAAGAGAGAATCTGAAACTACAACAGCAGTTGGTCCAACTTCTGAGTTTAAAGTTAGAGATCTTGGGAAGGTACTTCGTATGGCTTGGGGTCAAGAGCAAGGCAACTCTGAGGGGTTCTGTAGTGCCAATAAGGAAACATGCTGTGGAGTAAGCAGCACTGTAAAAACAGAAACTCCACAAGAACCATTGCCTTCTGTTTTGCACAGGCTTGACTTAAATGTTGCATCAGTACCGGATCTAAATGAAGAGCTAACCCCACCATTTGAATCCTCCAGAGATGAAGACAATGGATGCACTTTGCAGCGTGCTGTTGAAGCGGATGATGATGCTGCCTCTCATGACCTTGTGAAGAATGGTTTAGCAAGATCACATGGTAGTGGTGATTCGCAGACCTGGACTCACGGGCTTAACGGAGATGTCCCAGCCGTTGATTCCCGGGCAGAAGTTGGCAGGAAGAGGGCAGCAAATACAAACGAAGAGATCTATGATTGTGACAGCACACTAATAAATGGGCCACCATTGCTTATTGCTAATGGTTCATATTGCTTGGACGAGAACTTTGAGTACTGTGTGAAAATAATCCGATGGCTGGAATGTGAGCGTCACATTACACAGGAATTCAGGTTGAAATTGCTAACATGGTTTAGTTTGAGATCGACTGAGCAGGAACGTAGGGTGGTCAATACCTTTATTCAGACTATGATTGATGATCCAAGTAGCTTGGCAGGACAGTTAGTTGACTCATTTTCGGATATCGTATCCAACAAGAGGCCACGGAATGGATTCTGTAGTAAGCTGTGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

722

Amino Acids

79.54

Weight (kDa)

6.88

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	129 - 247	8.7e-33	PHD - plant homeodomain finger protein
Fn3_VIN3	PF23376	335 - 422	2.4e-29	VIN3-like, fibronectin type-III domain
VIN3_C	PF23380	637 - 710	1e-39	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	362, 833, 2138
AccBSI	CCGCTC	1 cut(s)	1107
AccI	GTMKAC	2 cut(s)	871, 1199
AciI	CCGC	3 cut(s)	522, 1107, 1676
AclI	AACGTT	1 cut(s)	945
AclWI	GGATC	6 cut(s)	373, 389, 953, 966, 1602, 2063
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	4 cut(s)	17, 196, 1348, 1976
AfaI	GTAC	4 cut(s)	714, 1431, 1590, 1925
AfiI	CCNNNNNNNGG	7 cut(s)	312, 362, 833, 1193, 1948, 2127, 2138
AgeI	ACCGGT	1 cut(s)	1303
AjnI	CCWGG	2 cut(s)	747, 1751
Alw21I	GWGCWC	2 cut(s)	446, 506
Alw26I	GTCTC	2 cut(s)	335, 357
Alw44I	GTGCAC	1 cut(s)	502
AlwI	GGATC	6 cut(s)	373, 389, 953, 966, 1602, 2063
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	1794
AoxI	GGCC	5 cut(s)	823, 939, 1251, 1871, 2129
ApaLI	GTGCAC	1 cut(s)	502
ApeKI	GCWGC	8 cut(s)	607, 676, 989, 1183, 1512, 1660, 1688, 1820
ApoI	RAATTY	4 cut(s)	17, 196, 1348, 1976
ArsI	GACNNNNNNTTYG	2 cut(s)	1901, 1933
AsiGI	ACCGGT	1 cut(s)	1303
Asp700I	GAANNNNTTC	2 cut(s)	159, 2141
AspLEI	GCGC	2 cut(s)	560, 632
AspS9I	GGNCC	5 cut(s)	143, 481, 824, 1391, 1871
AsuC2I	CCSGG	2 cut(s)	1795, 1796
AsuHPI	GGTGA	5 cut(s)	899, 1244, 1255, 1293, 1751
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	1794
AvaII	GGWCC	3 cut(s)	143, 481, 1391
BaeGI	GKGCMC	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	941
BamHI	GGATCC	1 cut(s)	958
BauI	CACGAG	1 cut(s)	855
BbsI	GAAGAC	2 cut(s)	236, 1647
Bbv12I	GWGCWC	2 cut(s)	446, 506
BbvI	GCAGC	8 cut(s)	619, 688, 976, 1195, 1524, 1672, 1675, 1832
BccI	CCATC	4 cut(s)	608, 746, 844, 1938
BceAI	ACGGC	2 cut(s)	687, 1769
BciT130I	CCWGG	2 cut(s)	749, 1753
BciVI	GTATCC	2 cut(s)	648, 2128
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	1795, 1796
BcoDI	GTCTC	2 cut(s)	335, 357
BfaI	CTAG	5 cut(s)	276, 486, 611, 809, 1353
BfmI	CTRYAG	3 cut(s)	1181, 1477, 2146
BfuI	GTATCC	2 cut(s)	648, 2128
BglII	AGATCT	2 cut(s)	1417, 1839
BisI	GCNGC	8 cut(s)	608, 677, 990, 1184, 1513, 1661, 1689, 1821
BlsI	GCNGC	8 cut(s)	609, 678, 991, 1185, 1514, 1662, 1690, 1822
BmcAI	AGTACT	1 cut(s)	1925
Bme1390I	CCNGG	4 cut(s)	749, 1753, 1795, 1796
Bme18I	GGWCC	3 cut(s)	143, 481, 1391
BmeT110I	CYCGRG	1 cut(s)	1794
BmgT120I	GGNCC	5 cut(s)	143, 481, 824, 1391, 1871
BmiI	GGNNCC	4 cut(s)	144, 145, 483, 960
BmrFI	CCNGG	4 cut(s)	749, 1753, 1795, 1796
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	8 cut(s)	88, 594, 685, 1028, 1070, 1592, 1640, 1675
BmuI	ACTGGG	1 cut(s)	821
BoxI	GACNNNNGTC	2 cut(s)	486, 1239
BpiI	GAAGAC	2 cut(s)	236, 1647
BpmI	CTGGAG	3 cut(s)	40, 339, 1615
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	754
BpuMI	CCSGG	2 cut(s)	1795, 1796
BsaJI	CCNNGG	2 cut(s)	1794, 2132
BsaWI	WCCGGW	2 cut(s)	1303, 1591
BsaXI	ACNNNNNCTCC	2 cut(s)	1516, 1546
Bsc4I	CCNNNNNNNGG	7 cut(s)	312, 362, 833, 1193, 1948, 2127, 2138
Bse118I	RCCGGY	1 cut(s)	1303
Bse1I	ACTGG	2 cut(s)	57, 827
Bse3DI	GCAATG	2 cut(s)	1544, 1877
BseBI	CCWGG	2 cut(s)	749, 1753
BseDI	CCNNGG	2 cut(s)	1794, 2132
BseGI	GGATG	5 cut(s)	700, 757, 1022, 1655, 1684
BseLI	CCNNNNNNNGG	7 cut(s)	312, 362, 833, 1193, 1948, 2127, 2138
BseMI	GCAATG	2 cut(s)	1544, 1877
BseMII	CTCAG	7 cut(s)	66, 1169, 1260, 1302, 1392, 1458, 2010
BseNI	ACTGG	2 cut(s)	57, 827
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	8 cut(s)	619, 688, 976, 1195, 1524, 1672, 1675, 1832
BseYI	CCCAGC	1 cut(s)	1780
BsgI	GTGCAG	1 cut(s)	1103
BshFI	GGCC	5 cut(s)	825, 941, 1253, 1873, 2131
BshTI	ACCGGT	1 cut(s)	1303
BsiHKAI	GWGCWC	2 cut(s)	446, 506
BsiHKCI	CYCGRG	1 cut(s)	1794
BsiSI	CCGG	3 cut(s)	1304, 1592, 1795
BslFI	GGGAC	3 cut(s)	129, 769, 1763
BslI	CCNNNNNNNGG	7 cut(s)	312, 362, 833, 1193, 1948, 2127, 2138
BsmAI	GTCTC	2 cut(s)	335, 357
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	3 cut(s)	129, 769, 1763
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	5 cut(s)	825, 941, 1253, 1873, 2131
BsoBI	CYCGRG	1 cut(s)	1794
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	446, 506
BspACI	CCGC	3 cut(s)	522, 1107, 1676
BspANI	GGCC	5 cut(s)	825, 941, 1253, 1873, 2131
BspCNI	CTCAG	7 cut(s)	67, 1168, 1259, 1303, 1393, 1459, 2011
BspHI	TCATGA	1 cut(s)	1696
BspLI	GGNNCC	4 cut(s)	144, 145, 483, 960
BspMAI	CTGCAG	1 cut(s)	1185
BspPI	GGATC	6 cut(s)	373, 389, 953, 966, 1602, 2063
BspQI	GCTCTTC	1 cut(s)	1599
BspT104I	TTCGAA	1 cut(s)	163
BsrBI	CCGCTC	1 cut(s)	1107
BsrDI	GCAATG	2 cut(s)	1544, 1877
BsrFI	RCCGGY	1 cut(s)	1303
BsrI	ACTGG	2 cut(s)	57, 827
BssAI	RCCGGY	1 cut(s)	1303
BssECI	CCNNGG	2 cut(s)	1794, 2132
BssNAI	GTATAC	1 cut(s)	1200
BssSI	CACGAG	1 cut(s)	855
Bst1107I	GTATAC	1 cut(s)	1200
Bst2BI	CACGAG	1 cut(s)	855
Bst2UI	CCWGG	2 cut(s)	749, 1753
Bst4CI	ACNGT	4 cut(s)	626, 1519, 1928, 2091
Bst6I	CTCTTC	3 cut(s)	1599, 1808, 1830
BstAPI	GCANNNNNTGC	3 cut(s)	441, 604, 695
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	6 cut(s)	303, 700, 939, 994, 1122, 1665
BstDEI	CTNAG	8 cut(s)	75, 1155, 1246, 1311, 1320, 1401, 1467, 2019
BstDSI	CCRYGG	1 cut(s)	2132
BstENI	CCTNNNNNAGG	1 cut(s)	1191
BstF5I	GGATG	5 cut(s)	700, 757, 1022, 1655, 1684
BstHHI	GCGC	2 cut(s)	560, 632
BstMAI	GTCTC	2 cut(s)	335, 357
BstMWI	GCNNNNNNNGC	7 cut(s)	404, 441, 604, 695, 851, 1673, 1879
BstNI	CCWGG	2 cut(s)	749, 1753
BstNSI	RCATGY	3 cut(s)	572, 895, 1500
BstPAI	GACNNNNGTC	2 cut(s)	486, 1239
BstSCI	CCNGG	4 cut(s)	747, 1751, 1793, 1794
BstSFI	CTRYAG	3 cut(s)	1181, 1477, 2146
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	8 cut(s)	619, 688, 976, 1195, 1524, 1672, 1675, 1832
BstV2I	GAAGAC	2 cut(s)	236, 1647
BstX2I	RGATCY	6 cut(s)	365, 381, 958, 1417, 1594, 1839
BstYI	RGATCY	6 cut(s)	365, 381, 958, 1417, 1594, 1839
BstZ17I	GTATAC	1 cut(s)	1200
BsuI	GTATCC	2 cut(s)	648, 2128
BsuRI	GGCC	5 cut(s)	825, 941, 1253, 1873, 2131
BtgI	CCRYGG	1 cut(s)	2132
BtsCI	GGATG	5 cut(s)	700, 757, 1022, 1655, 1684
BtsIMutI	CAGTG	2 cut(s)	64, 1515
Cac8I	GCNNGC	6 cut(s)	303, 700, 939, 994, 1122, 1665
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	1696
CfoI	GCGC	2 cut(s)	560, 632
Cfr10I	RCCGGY	1 cut(s)	1303
Cfr13I	GGNCC	5 cut(s)	143, 481, 824, 1391, 1871
Cfr9I	CCCGGG	1 cut(s)	1794
CseI	GACGC	2 cut(s)	317, 1949
Csp6I	GTAC	4 cut(s)	713, 1430, 1589, 1924
CspAI	ACCGGT	1 cut(s)	1303
CviAII	CATG	8 cut(s)	378, 569, 779, 892, 1497, 1697, 1730, 1998
CviQI	GTAC	4 cut(s)	713, 1430, 1589, 1924
DdeI	CTNAG	8 cut(s)	75, 1155, 1246, 1311, 1320, 1401, 1467, 2019
DraI	TTTAAA	2 cut(s)	769, 1408
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	3 cut(s)	1599, 1808, 1830
EarI	CTCTTC	3 cut(s)	1599, 1808, 1830
EciI	GGCGGA	1 cut(s)	537
Eco32I	GATATC	2 cut(s)	1173, 2113
Eco47I	GGWCC	3 cut(s)	143, 481, 1391
Eco88I	CYCGRG	1 cut(s)	1794
EcoNI	CCTNNNNNAGG	1 cut(s)	1191
EcoO109I	RGGNCCY	2 cut(s)	143, 481
EcoRI	GAATTC	2 cut(s)	196, 1976
EcoRII	CCWGG	2 cut(s)	747, 1751
EcoRV	GATATC	2 cut(s)	1173, 2113
EcoT22I	ATGCAT	1 cut(s)	1063
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	8 cut(s)	381, 572, 782, 895, 1500, 1700, 1733, 2001
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	3 cut(s)	129, 769, 1763
FatI	CATG	8 cut(s)	377, 568, 778, 891, 1496, 1696, 1729, 1997
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	871, 1199
Fnu4HI	GCNGC	8 cut(s)	608, 677, 990, 1184, 1513, 1661, 1689, 1821
FokI	GGATG	5 cut(s)	707, 764, 1009, 1662, 1691
Fsp4HI	GCNGC	8 cut(s)	608, 677, 990, 1184, 1513, 1661, 1689, 1821
FspBI	CTAG	5 cut(s)	276, 486, 611, 809, 1353
GlaI	GCGC	2 cut(s)	559, 631
GluI	GCNGC	8 cut(s)	608, 677, 990, 1184, 1513, 1661, 1689, 1821
GsaI	CCCAGC	1 cut(s)	1784
GsuI	CTGGAG	3 cut(s)	40, 339, 1615
HaeIII	GGCC	5 cut(s)	825, 941, 1253, 1873, 2131
HapII	CCGG	3 cut(s)	1304, 1592, 1795
HgaI	GACGC	2 cut(s)	317, 1949
HhaI	GCGC	2 cut(s)	560, 632
Hin1II	CATG	8 cut(s)	381, 572, 782, 895, 1500, 1700, 1733, 2001
Hin6I	GCGC	2 cut(s)	558, 630
HinP1I	GCGC	2 cut(s)	558, 630
HincII	GTYRAC	1 cut(s)	2098
HindII	GTYRAC	1 cut(s)	2098
HindIII	AAGCTT	1 cut(s)	267
HpaII	CCGG	3 cut(s)	1304, 1592, 1795
HphI	GGTGA	5 cut(s)	899, 1244, 1255, 1293, 1751
Hpy166II	GTNNAC	5 cut(s)	504, 872, 980, 1200, 2098
Hpy8I	GTNNAC	5 cut(s)	504, 872, 980, 1200, 2098
HpyAV	CCTTC	7 cut(s)	145, 170, 572, 784, 1155, 1420, 1560
HpyCH4III	ACNGT	4 cut(s)	626, 1519, 1928, 2091
HpyCH4IV	ACGT	3 cut(s)	945, 1202, 2029
HpyF10VI	GCNNNNNNNGC	7 cut(s)	404, 441, 604, 695, 851, 1673, 1879
HpyF3I	CTNAG	8 cut(s)	75, 1155, 1246, 1311, 1320, 1401, 1467, 2019
HpySE526I	ACGT	3 cut(s)	945, 1202, 2029
Hsp92II	CATG	8 cut(s)	381, 572, 782, 895, 1500, 1700, 1733, 2001
HspAI	GCGC	2 cut(s)	558, 630
KflI	GGGWCCC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	346
LguI	GCTCTTC	1 cut(s)	1599
LmnI	GCTCC	1 cut(s)	911
Lsp1109I	GCAGC	8 cut(s)	619, 688, 976, 1195, 1524, 1672, 1675, 1832
LweI	GCATC	8 cut(s)	88, 594, 685, 1028, 1070, 1592, 1640, 1675
MaeI	CTAG	5 cut(s)	276, 486, 611, 809, 1353
MaeII	ACGT	3 cut(s)	945, 1202, 2029
MaeIII	GTNAC	8 cut(s)	545, 620, 737, 887, 1232, 1241, 1850, 1961
MbiI	CCGCTC	1 cut(s)	1107
MfeI	CAATTG	3 cut(s)	599, 879, 915
MflI	RGATCY	6 cut(s)	365, 381, 958, 1417, 1594, 1839
MhlI	GDGCHC	2 cut(s)	446, 506
MlsI	TGGCCA	1 cut(s)	941
MluNI	TGGCCA	1 cut(s)	941
MlyI	GAGTC	3 cut(s)	738, 1750, 2093
MmeI	TCCRAC	3 cut(s)	647, 1418, 2145
Mox20I	TGGCCA	1 cut(s)	941
Mph1103I	ATGCAT	1 cut(s)	1063
MroXI	GAANNNNTTC	2 cut(s)	159, 2141
MscI	TGGCCA	1 cut(s)	941
MseI	TTAA	6 cut(s)	768, 1077, 1407, 1574, 1767, 2164
MslI	CAYNNNNRTG	1 cut(s)	1734
Msp20I	TGGCCA	1 cut(s)	941
MspI	CCGG	3 cut(s)	1304, 1592, 1795
MspR9I	CCNGG	4 cut(s)	749, 1753, 1795, 1796
MunI	CAATTG	3 cut(s)	599, 879, 915
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	749, 1753
MwoI	GCNNNNNNNGC	7 cut(s)	404, 441, 604, 695, 851, 1673, 1879
NciI	CCSGG	2 cut(s)	1795, 1796
NlaIII	CATG	8 cut(s)	381, 572, 782, 895, 1500, 1700, 1733, 2001
NlaIV	GGNNCC	4 cut(s)	144, 145, 483, 960
NmeAIII	GCCGAG	1 cut(s)	995
NmuCI	GTSAC	6 cut(s)	545, 887, 1232, 1241, 1850, 1961
NsiI	ATGCAT	1 cut(s)	1063
NspI	RCATGY	3 cut(s)	572, 895, 1500
NspV	TTCGAA	1 cut(s)	163
PagI	TCATGA	1 cut(s)	1696
PciSI	GCTCTTC	1 cut(s)	1599
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	2 cut(s)	159, 2141
PflMI	CCANNNNNTGG	3 cut(s)	362, 833, 2138
PfoI	TCCNGGA	1 cut(s)	747
PinAI	ACCGGT	1 cut(s)	1303
PkrI	GCNGC	8 cut(s)	609, 678, 991, 1185, 1514, 1662, 1690, 1822
PleI	GAGTC	3 cut(s)	738, 1750, 2093
PpsI	GAGTC	3 cut(s)	738, 1750, 2093
PpuMI	RGGWCCY	2 cut(s)	143, 481
PshAI	GACNNNNGTC	2 cut(s)	486, 1239
Psp1406I	AACGTT	1 cut(s)	945
Psp5II	RGGWCCY	2 cut(s)	143, 481
Psp6I	CCWGG	2 cut(s)	747, 1751
PspFI	CCCAGC	1 cut(s)	1780
PspGI	CCWGG	2 cut(s)	747, 1751
PspN4I	GGNNCC	4 cut(s)	144, 145, 483, 960
PspPI	GGNCC	5 cut(s)	143, 481, 824, 1391, 1871
PspPPI	RGGWCCY	2 cut(s)	143, 481
PsrI	GAACNNNNNNTAC	2 cut(s)	1907, 1939
PstI	CTGCAG	1 cut(s)	1185
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	6 cut(s)	365, 381, 958, 1417, 1594, 1839
RsaI	GTAC	4 cut(s)	714, 1431, 1590, 1925
RsaNI	GTAC	4 cut(s)	713, 1430, 1589, 1924
RseI	CAYNNNNRTG	1 cut(s)	1734
SapI	GCTCTTC	1 cut(s)	1599
SaqAI	TTAA	6 cut(s)	768, 1077, 1407, 1574, 1767, 2164
SatI	GCNGC	8 cut(s)	608, 677, 990, 1184, 1513, 1661, 1689, 1821
Sau96I	GGNCC	5 cut(s)	143, 481, 824, 1391, 1871
ScaI	AGTACT	1 cut(s)	1925
SchI	GAGTC	3 cut(s)	738, 1750, 2093
ScrFI	CCNGG	4 cut(s)	749, 1753, 1795, 1796
SduI	GDGCHC	2 cut(s)	446, 506
SfaNI	GCATC	8 cut(s)	88, 594, 685, 1028, 1070, 1592, 1640, 1675
SfcI	CTRYAG	3 cut(s)	1181, 1477, 2146
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	3 cut(s)	143, 481, 1391
SmaI	CCCGGG	1 cut(s)	1796
SmiMI	CAYNNNNRTG	1 cut(s)	1734
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
SsiI	CCGC	3 cut(s)	522, 1107, 1676
SspI	AATATT	1 cut(s)	1075
SspMI	CTAG	5 cut(s)	276, 486, 611, 809, 1353
StyD4I	CCNGG	4 cut(s)	747, 1751, 1793, 1794
TaaI	ACNGT	4 cut(s)	626, 1519, 1928, 2091
TaiI	ACGT	3 cut(s)	948, 1205, 2032
TaqI	TCGA	4 cut(s)	163, 552, 1341, 2015
TatI	WGTACW	2 cut(s)	712, 1923
Tru1I	TTAA	6 cut(s)	768, 1077, 1407, 1574, 1767, 2164
Tru9I	TTAA	6 cut(s)	768, 1077, 1407, 1574, 1767, 2164
TscAI	CASTG	2 cut(s)	64, 1522
TseFI	GTSAC	6 cut(s)	545, 887, 1232, 1241, 1850, 1961
TseI	GCWGC	8 cut(s)	607, 676, 989, 1183, 1512, 1660, 1688, 1820
Tsp45I	GTSAC	6 cut(s)	545, 887, 1232, 1241, 1850, 1961
TspDTI	ATGAA	6 cut(s)	149, 189, 945, 1617, 1653, 1887
TspGWI	ACGGA	3 cut(s)	1238, 1785, 2149
TspMI	CCCGGG	1 cut(s)	1794
TspRI	CASTG	2 cut(s)	64, 1522
Van91I	CCANNNNNTGG	3 cut(s)	362, 833, 2138
VneI	GTGCAC	1 cut(s)	502
VpaK11BI	GGWCC	3 cut(s)	143, 481, 1391
XagI	CCTNNNNNAGG	1 cut(s)	1191
XapI	RAATTY	4 cut(s)	17, 196, 1348, 1976
XceI	RCATGY	3 cut(s)	572, 895, 1500
XmaI	CCCGGG	1 cut(s)	1794
XmiI	GTMKAC	2 cut(s)	871, 1199
XmnI	GAANNNNTTC	2 cut(s)	159, 2141
XspI	CTAG	5 cut(s)	276, 486, 611, 809, 1353
ZrmI	AGTACT	1 cut(s)	1925
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.