Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

91123052 .. 91128678

Gene Structure 5627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCCCGATCTGAATGAAGAGCTAACCCCGCCTTCTGAGTCATCCAGAGATGAAGATAATGGATGCAGTTTGCAGCAGGCTGTGGAGGCAGATAATAATGCTGCGTCTCATGACATGGTGAAGAATGGCCTAGCAAGATCACGTGGTAGTGGTGATTCACAGACCTGGACTCGTGGGATTACTGGAGATGTCCCTGCTGTGATTCCCAGGCAGAAATTTGCAGGAAGAGGAAAGGAAACACAAATGAAGAGACCCATGATTGTGACAGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

91

Amino Acids

9.81

Weight (kDa)

5.28

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	215
AcvI	CACGTG	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	164, 206
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw26I	GTCTC	2 cut(s)	111, 244
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	73, 101
ApoI	RAATTY	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	130, 164
BauI	CACGAG	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	85, 88
BciT130I	CCWGG	2 cut(s)	166, 208
BcoDI	GTCTC	2 cut(s)	111, 244
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	74, 102
BlsI	GCNGC	2 cut(s)	75, 103
Bme1390I	CCNGG	2 cut(s)	166, 208
BmrFI	CCNGG	2 cut(s)	166, 208
BmsI	GCATC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	166, 208
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	41, 68
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	85, 88
BshFI	GGCC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	111, 244
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	7, 137
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	7, 137
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	166, 208
Bst6I	CTCTTC	3 cut(s)	12, 220, 242
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	41, 68
BstKTI	GATC	2 cut(s)	10, 140
BstMAI	GTCTC	2 cut(s)	111, 244
BstMBI	GATC	2 cut(s)	7, 137
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 86
BstNI	CCWGG	2 cut(s)	166, 208
BstSCI	CCNGG	2 cut(s)	164, 206
BstV1I	GCAGC	2 cut(s)	85, 88
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	41, 68
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	109
CseI	GACGC	1 cut(s)	93
CviAII	CATG	3 cut(s)	110, 115, 256
CviJI	RGCY	3 cut(s)	22, 80, 129
CviKI_1	RGCY	3 cut(s)	22, 80, 129
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	9, 139
DpnII	GATC	2 cut(s)	7, 137
Eam1104I	CTCTTC	3 cut(s)	12, 220, 242
EarI	CTCTTC	3 cut(s)	12, 220, 242
Eco31I	GGTCTC	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	164, 206
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	113, 118, 259
FaiI	YATR	3 cut(s)	111, 116, 257
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	109, 114, 255
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	74, 102
FokI	GGATG	2 cut(s)	28, 75
Fsp4HI	GCNGC	2 cut(s)	74, 102
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	2 cut(s)	74, 102
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	113, 118, 259
HinfI	GANTC	4 cut(s)	38, 155, 169, 202
HphI	GGTGA	2 cut(s)	130, 164
Hpy188I	TCNGA	2 cut(s)	12, 37
Hpy188III	TCNNGA	2 cut(s)	45, 110
HpyAV	CCTTC	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	66, 73, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 86
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	113, 118, 259
Kzo9I	GATC	2 cut(s)	7, 137
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	9 cut(s)	58, 62, 151, 168, 178, 193, 207, 207, 220
Lsp1109I	GCAGC	2 cut(s)	85, 88
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	9, 139
MboI	GATC	2 cut(s)	7, 137
MboII	GAAGA	5 cut(s)	29, 65, 133, 237, 259
MluCI	AATT	1 cut(s)	215
MlyI	GAGTC	2 cut(s)	47, 163
MnlI	CCTC	2 cut(s)	79, 221
MslI	CAYNNNNRTG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	166, 208
MvaI	CCWGG	2 cut(s)	166, 208
MwoI	GCNNNNNNNGC	2 cut(s)	28, 86
NdeII	GATC	2 cut(s)	7, 137
NlaIII	CATG	3 cut(s)	113, 118, 259
NmuCI	GTSAC	1 cut(s)	262
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	155, 202
PkrI	GCNGC	2 cut(s)	75, 103
PleI	GAGTC	2 cut(s)	46, 163
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	2 cut(s)	46, 163
Ppu21I	YACGTR	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	164, 206
PspCI	CACGTG	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	164, 206
RseI	CAYNNNNRTG	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	2 cut(s)	74, 102
Sau3AI	GATC	2 cut(s)	7, 137
SchI	GAGTC	2 cut(s)	47, 163
ScrFI	CCNGG	2 cut(s)	166, 208
SetI	ASST	3 cut(s)	24, 145, 167
SfaNI	GCATC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	164, 206
TaiI	ACGT	1 cut(s)	145
TasI	AATT	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	155, 202
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	73, 101
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	30, 66, 260
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.