Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Reverse (-)

88055483 .. 88061469

Gene Structure 5987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGCCGAACTTTTGAAGACTACTAACAAGACAAATAAGAAGCAGGAGTCAAAAAAAGCTTCTTCTAGTCCAAATAATCATCCTCCTAAAAAGCAATCCAGAAAGGGGGAAAATCCCATCCGACTCTCACCAGCTTCTGAGCGGTCTCCAGATTTTGGATGTTCGAACTCATGGATCTGTAAAAACTCTGCTTGTAGAGCTGTACTATCCATAGACAACACATTCTGCAAGAGATGCTCCTGCTGTATTTGTCATTTGTTTGATGACAACAAGGACCCAAGTCTTTGGTTAGTATGCACATCTGAATCTGGTGAGGGAGATTCCTGTGGGTTATCTTGTCACATTGACTGTGCGCTTAGACGTGAAAAGGTGGGAGTTGTTGATCTTGGGCAATTGATGCAGCTAGATGGTAGTTATTGTTGTGCTTCATGTGGTAAAGTTTCTGGGATACTTGGGATTTGGAAGAAGCAGCTACTCGTAGCAAAGGATGCTCGACGTGTTGATGTTCTTTGGGACAGGATATGCTTGAGTTATAGGCTTCTGGATGGGACTTCAAGGTTTAAAGAACTTCATGATATTGTGAAGGAAGCGAAGACTAAACTTGAGACAGAACTAGGTCCAATTAATGGAGATTCAGGAACAATGGTACGTGGGATAGTCAGCAGACTATCTATCGCTGGTGATGTGCTAAAACTCTGCTCTCTTGCAATTGAGAAAGCTGATGAATGGTTGGCCAATGTTTCTAGTGCAAACCCAAACAGAGAGGGTTCACTTCCAGCAGCCTGCAAGTTTCTCTTTGAGGAAGTAACACCTTCATCTGTTGTGATTATATTGATCGAACTGTCTAATGCGTCATCTGATGAAATCAAGGGATACAAGCTCTGGTATTACAAGAGCAGAGAAGAATCACACACAAAAGAGCCTACTTGTACCTTTTCAAGATCTCAGAGAAGAATTTTGATCTCCAATCTGCAGCCTTGCACAGAGTATACATTTAGGATAATATCTTATACGGAGGCTGGTGACTTGGGTCACTCTGAGGCAAAGTGTTTCACCAAAAGTGTTGAGATAATTCACAAAAACCCGGATTCACCGGTCTGCAGGAATCATAAGAAAGAGAATCCTGTCATTGAGGCAAATTCTAGTGCCATGAGGGAGTCTGAAACTACAACAGCAGTTGTGCCTTCTTCCGAATTTAAAGTTCGTGATCTTGGAAAGATACTTCGTCTGGCTCAGGCTCAACAGAAAGGCTCCTTGGAGGGCTTTTGTAGTGTCAACAAAGAAAAATGTTGTGGACCAAGCAACCCGATAAAAACTGAAACTCTACAAGAAGAGTTGCCTTCTGTTCCACGGGGGCTTGACTTAAATGTTCTTTCAATGCCTGATCTGAATGAAGAGCTAACCCCGCCCTTTGAGTCCTCCAGAGATGAAGATAATGGATGCACTTTGCAGCAGGCTGTGGAGGCAGATGATGATGCTGCTTCTCATGACATGGTGAAAAACGGCCTAGCAAGATCACATGGTAGTGGTGATTCACAGACCTGGGCTCATGGGATTACTGGAGATGTCCCTGCTGTTGATTCTCGGGCAGAAATTTGCAGGAAGAGGAAAGGAAACTCAAATGAAGAGACTCATGATTGTGACAGCACCCTGATAAATGGGCCACCATTGCAAAATGGTTCTTGTTGCTTGGACGAGAACTTTGAGTACTGTGTGAAAATAATCAGGTGGCTGGAATGCGAGGGTCACCTTACGGAGGAATTCAGATTGAAGTTGCTAACATGGTTCAGTTTGAGATCAACCGAGCAAGAGCGTAGGGTGGTCAACACCTTTATTCAAACTATGATTGATGATCCAAGTAGCTTGGCAGGACAGTTAGTTGACTCCTTTGCAGATATCATATCCCGCAAGAGGCAACGGAATGGATTCTGCAGTAAGCTGTGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

649

Amino Acids

72.08

Weight (kDa)

6.22

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	60 - 178	1.3e-32	PHD - plant homeodomain finger protein
Fn3_VIN3	PF23376	265 - 352	3.6e-32	VIN3-like, fibronectin type-III domain
fn3	PF00041	266 - 346	8.2e-07	Fibronectin type III domain
VIN3_C	PF23380	565 - 638	1.3e-39	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	155, 626
AccBSI	CCGCTC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	989
AciI	CCGC	3 cut(s)	142, 1406, 1906
AclWI	GGATC	2 cut(s)	182, 1847
AcoI	YGGCCR	2 cut(s)	3, 732
AcsI	RAATTY	5 cut(s)	954, 1138, 1193, 1593, 1760
AfaI	GTAC	4 cut(s)	204, 648, 931, 1709
AfiI	CCNNNNNNNGG	5 cut(s)	105, 155, 626, 1756, 1911
AflIII	ACRYGT	1 cut(s)	496
AgeI	ACCGGT	1 cut(s)	1093
AgsI	TTSAA	6 cut(s)	16, 555, 939, 1377, 1771, 1838
AjiI	CACGTC	2 cut(s)	362, 497
AjnI	CCWGG	1 cut(s)	1541
AjuI	GAANNNNNNNTTGG	2 cut(s)	1238, 1270
Alw26I	GTCTC	3 cut(s)	150, 599, 1622
AlwI	GGATC	2 cut(s)	182, 1847
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	1584
AoxI	GGCC	4 cut(s)	3, 732, 1504, 1661
ApeKI	GCWGC	6 cut(s)	400, 469, 779, 973, 1450, 1478
ApoI	RAATTY	5 cut(s)	954, 1138, 1193, 1593, 1760
ArsI	GACNNNNNNTTYG	2 cut(s)	1685, 1717
AseI	ATTAAT	1 cut(s)	624
AsiGI	ACCGGT	1 cut(s)	1093
Asp700I	GAANNNNTTC	1 cut(s)	1925
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	4 cut(s)	274, 617, 1295, 1661
AsuC2I	CCSGG	1 cut(s)	1085
AsuHPI	GGTGA	9 cut(s)	120, 323, 692, 1034, 1045, 1083, 1507, 1541, 1739
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	1584
AvaII	GGWCC	3 cut(s)	274, 617, 1295
BalI	TGGCCA	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	1549
BbsI	GAAGAC	2 cut(s)	23, 599
BbvI	GCAGC	6 cut(s)	412, 481, 791, 985, 1462, 1465
BccI	CCATC	3 cut(s)	125, 401, 539
BceAI	ACGGC	1 cut(s)	1519
BciT130I	CCWGG	1 cut(s)	1543
BciVI	GTATCC	2 cut(s)	441, 866
BcnI	CCSGG	1 cut(s)	1085
BcoDI	GTCTC	3 cut(s)	150, 599, 1622
BfaI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
BfmI	CTRYAG	3 cut(s)	971, 1099, 1930
BfuI	GTATCC	2 cut(s)	441, 866
BglII	AGATCT	1 cut(s)	941
BisI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
BlsI	GCNGC	6 cut(s)	402, 471, 781, 975, 1452, 1480
BmcAI	AGTACT	1 cut(s)	1709
Bme1390I	CCNGG	2 cut(s)	1085, 1543
Bme18I	GGWCC	3 cut(s)	274, 617, 1295
BmeT110I	CYCGRG	1 cut(s)	1584
BmgBI	CACGTC	2 cut(s)	362, 497
BmgT120I	GGNCC	4 cut(s)	274, 617, 1295, 1661
BmiI	GGNNCC	2 cut(s)	276, 1252
BmrFI	CCNGG	2 cut(s)	1085, 1543
BmsI	GCATC	5 cut(s)	224, 387, 478, 1430, 1465
BoxI	GACNNNNGTC	2 cut(s)	279, 1029
BpiI	GAAGAC	2 cut(s)	23, 599
BpmI	CTGGAG	3 cut(s)	132, 1405, 1581
Bpu10I	CCTNAGC	1 cut(s)	1233
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	547, 623
BpuMI	CCSGG	1 cut(s)	1085
BsaAI	YACGTR	1 cut(s)	650
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	1254, 1349, 1542
BsaWI	WCCGGW	1 cut(s)	1093
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 155, 626, 1756, 1911
Bse118I	RCCGGY	1 cut(s)	1093
Bse1I	ACTGG	1 cut(s)	1564
Bse3DI	GCAATG	1 cut(s)	1667
BseBI	CCWGG	1 cut(s)	1543
BseDI	CCNNGG	3 cut(s)	1254, 1349, 1542
BseGI	GGATG	6 cut(s)	79, 117, 164, 493, 550, 1445
BseLI	CCNNNNNNNGG	5 cut(s)	105, 155, 626, 1756, 1911
BseMI	GCAATG	1 cut(s)	1667
BseMII	CTCAG	4 cut(s)	129, 959, 1029, 1247
BseNI	ACTGG	1 cut(s)	1564
BseXI	GCAGC	6 cut(s)	412, 481, 791, 985, 1462, 1465
BshFI	GGCC	4 cut(s)	5, 734, 1506, 1663
BshTI	ACCGGT	1 cut(s)	1093
BsiHKCI	CYCGRG	1 cut(s)	1584
BsiSI	CCGG	2 cut(s)	1085, 1094
BslFI	GGGAC	3 cut(s)	527, 562, 1553
BslI	CCNNNNNNNGG	5 cut(s)	105, 155, 626, 1756, 1911
BsmAI	GTCTC	3 cut(s)	150, 599, 1622
BsmFI	GGGAC	3 cut(s)	527, 562, 1553
BsmI	GAATGC	1 cut(s)	1742
BsnI	GGCC	4 cut(s)	5, 734, 1506, 1663
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	1584
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	1549
BspACI	CCGC	3 cut(s)	142, 1406, 1906
BspANI	GGCC	4 cut(s)	5, 734, 1506, 1663
BspCNI	CTCAG	4 cut(s)	130, 958, 1030, 1246
BspHI	TCATGA	3 cut(s)	571, 1486, 1633
BspLI	GGNNCC	2 cut(s)	276, 1252
BspMAI	CTGCAG	3 cut(s)	975, 1103, 1934
BspPI	GGATC	2 cut(s)	182, 1847
BspQI	GCTCTTC	1 cut(s)	1389
BspT104I	TTCGAA	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	1667
BsrFI	RCCGGY	1 cut(s)	1093
BsrI	ACTGG	1 cut(s)	1564
BssAI	RCCGGY	1 cut(s)	1093
BssECI	CCNNGG	3 cut(s)	1254, 1349, 1542
BssNAI	GTATAC	1 cut(s)	990
BssT1I	CCWWGG	1 cut(s)	1254
Bst1107I	GTATAC	1 cut(s)	990
Bst2UI	CCWGG	1 cut(s)	1543
Bst4CI	ACNGT	4 cut(s)	350, 843, 1712, 1875
Bst6I	CTCTTC	4 cut(s)	1326, 1389, 1598, 1620
BstAPI	GCANNNNNTGC	3 cut(s)	234, 397, 488
BstBAI	YACGTR	1 cut(s)	650
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	784, 1455
BstDEI	CTNAG	5 cut(s)	138, 356, 945, 1038, 1233
BstDSI	CCRYGG	1 cut(s)	1349
BstEII	GGTNACC	1 cut(s)	1745
BstENI	CCTNNNNNAGG	1 cut(s)	1754
BstF5I	GGATG	6 cut(s)	79, 117, 164, 493, 550, 1445
BstHHI	GCGC	1 cut(s)	355
BstMAI	GTCTC	3 cut(s)	150, 599, 1622
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 234, 397, 488, 1405, 1463, 1669
BstNI	CCWGG	1 cut(s)	1543
BstPAI	GACNNNNGTC	2 cut(s)	279, 1029
BstPI	GGTNACC	1 cut(s)	1745
BstSCI	CCNGG	2 cut(s)	1083, 1541
BstSFI	CTRYAG	3 cut(s)	971, 1099, 1930
BstV1I	GCAGC	6 cut(s)	412, 481, 791, 985, 1462, 1465
BstV2I	GAAGAC	2 cut(s)	23, 599
BstX2I	RGATCY	2 cut(s)	174, 941
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	2 cut(s)	174, 941
BstZ17I	GTATAC	1 cut(s)	990
BsuI	GTATCC	2 cut(s)	441, 866
BsuRI	GGCC	4 cut(s)	5, 734, 1506, 1663
BtgI	CCRYGG	1 cut(s)	1349
BtrI	CACGTC	2 cut(s)	362, 497
BtsCI	GGATG	6 cut(s)	79, 117, 164, 493, 550, 1445
Cac8I	GCNNGC	2 cut(s)	784, 1455
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	3 cut(s)	571, 1486, 1633
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	1093
Cfr13I	GGNCC	4 cut(s)	274, 617, 1295, 1661
CseI	GACGC	1 cut(s)	840
Csp6I	GTAC	4 cut(s)	203, 647, 930, 1708
CspAI	ACCGGT	1 cut(s)	1093
CviQI	GTAC	4 cut(s)	203, 647, 930, 1708
DdeI	CTNAG	5 cut(s)	138, 356, 945, 1038, 1233
DraI	TTTAAA	2 cut(s)	562, 1198
EaeI	YGGCCR	2 cut(s)	3, 732
Eam1104I	CTCTTC	4 cut(s)	1326, 1389, 1598, 1620
EarI	CTCTTC	4 cut(s)	1326, 1389, 1598, 1620
Eco130I	CCWWGG	1 cut(s)	1254
Eco24I	GRGCYC	1 cut(s)	1549
Eco31I	GGTCTC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	1897
Eco47I	GGWCC	3 cut(s)	274, 617, 1295
Eco88I	CYCGRG	1 cut(s)	1584
Eco91I	GGTNACC	1 cut(s)	1745
EcoNI	CCTNNNNNAGG	1 cut(s)	1754
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	1745
EcoRI	GAATTC	1 cut(s)	1760
EcoRII	CCWGG	1 cut(s)	1541
EcoRV	GATATC	1 cut(s)	1897
EcoT14I	CCWWGG	1 cut(s)	1254
EcoT38I	GRGCYC	1 cut(s)	1549
ErhI	CCWWGG	1 cut(s)	1254
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	3 cut(s)	527, 562, 1553
FauI	CCCGC	2 cut(s)	1413, 1913
FblI	GTMKAC	1 cut(s)	989
Fnu4HI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
FokI	GGATG	6 cut(s)	66, 104, 171, 500, 557, 1452
FriOI	GRGCYC	1 cut(s)	1549
Fsp4HI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
FspBI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
GsuI	CTGGAG	3 cut(s)	132, 1405, 1581
HaeIII	GGCC	4 cut(s)	5, 734, 1506, 1663
HapII	CCGG	2 cut(s)	1085, 1094
HgaI	GACGC	1 cut(s)	840
HhaI	GCGC	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	3 cut(s)	1276, 1825, 1882
HindII	GTYRAC	3 cut(s)	1276, 1825, 1882
HindIII	AAGCTT	1 cut(s)	57
HpaII	CCGG	2 cut(s)	1085, 1094
HphI	GGTGA	9 cut(s)	120, 323, 692, 1034, 1045, 1083, 1507, 1541, 1739
Hpy166II	GTNNAC	6 cut(s)	770, 990, 1276, 1295, 1825, 1882
Hpy8I	GTNNAC	6 cut(s)	770, 990, 1276, 1295, 1825, 1882
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	4 cut(s)	577, 822, 1194, 1350
HpyCH4III	ACNGT	4 cut(s)	350, 843, 1712, 1875
HpyCH4IV	ACGT	3 cut(s)	361, 496, 649
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 234, 397, 488, 1405, 1463, 1669
HpyF3I	CTNAG	5 cut(s)	138, 356, 945, 1038, 1233
HpySE526I	ACGT	3 cut(s)	361, 496, 649
HspAI	GCGC	1 cut(s)	353
LguI	GCTCTTC	1 cut(s)	1389
LmnI	GCTCC	2 cut(s)	242, 1256
Lsp1109I	GCAGC	6 cut(s)	412, 481, 791, 985, 1462, 1465
LweI	GCATC	5 cut(s)	224, 387, 478, 1430, 1465
MaeI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
MaeII	ACGT	3 cut(s)	361, 496, 649
MaeIII	GTNAC	6 cut(s)	338, 805, 1022, 1031, 1640, 1745
MbiI	CCGCTC	1 cut(s)	142
MfeI	CAATTG	2 cut(s)	392, 708
MflI	RGATCY	2 cut(s)	174, 941
MhlI	GDGCHC	1 cut(s)	1549
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	9 cut(s)	392, 621, 708, 954, 1071, 1138, 1193, 1593, 1760
MluNI	TGGCCA	1 cut(s)	734
MlyI	GAGTC	6 cut(s)	56, 117, 1166, 1424, 1624, 1877
MmeI	TCCRAC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	734
MroXI	GAANNNNTTC	1 cut(s)	1925
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	5 cut(s)	561, 624, 1197, 1364, 1948
MslI	CAYNNNNRTG	2 cut(s)	1524, 1638
Msp20I	TGGCCA	1 cut(s)	734
MspI	CCGG	2 cut(s)	1085, 1094
MspR9I	CCNGG	2 cut(s)	1085, 1543
MunI	CAATTG	2 cut(s)	392, 708
Mva1269I	GAATGC	1 cut(s)	1742
MvaI	CCWGG	1 cut(s)	1543
MwoI	GCNNNNNNNGC	7 cut(s)	197, 234, 397, 488, 1405, 1463, 1669
NciI	CCSGG	1 cut(s)	1085
NlaIV	GGNNCC	2 cut(s)	276, 1252
NmuCI	GTSAC	5 cut(s)	338, 1022, 1031, 1640, 1745
NspV	TTCGAA	1 cut(s)	164
PagI	TCATGA	3 cut(s)	571, 1486, 1633
PciSI	GCTCTTC	1 cut(s)	1389
PctI	GAATGC	1 cut(s)	1742
PdmI	GAANNNNTTC	1 cut(s)	1925
PflMI	CCANNNNNTGG	2 cut(s)	155, 626
PinAI	ACCGGT	1 cut(s)	1093
PkrI	GCNGC	6 cut(s)	402, 471, 781, 975, 1452, 1480
PleI	GAGTC	6 cut(s)	55, 117, 1165, 1423, 1624, 1877
PpsI	GAGTC	6 cut(s)	55, 117, 1165, 1423, 1624, 1877
Ppu21I	YACGTR	1 cut(s)	650
PpuMI	RGGWCCY	1 cut(s)	274
PshAI	GACNNNNGTC	2 cut(s)	279, 1029
PshBI	ATTAAT	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	1541
PspEI	GGTNACC	1 cut(s)	1745
PspGI	CCWGG	1 cut(s)	1541
PspN4I	GGNNCC	2 cut(s)	276, 1252
PspPI	GGNCC	4 cut(s)	274, 617, 1295, 1661
PspPPI	RGGWCCY	1 cut(s)	274
PsrI	GAACNNNNNNTAC	2 cut(s)	1691, 1723
PstI	CTGCAG	3 cut(s)	975, 1103, 1934
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	174, 941
RsaI	GTAC	4 cut(s)	204, 648, 931, 1709
RsaNI	GTAC	4 cut(s)	203, 647, 930, 1708
RseI	CAYNNNNRTG	2 cut(s)	1524, 1638
SapI	GCTCTTC	1 cut(s)	1389
SaqAI	TTAA	5 cut(s)	561, 624, 1197, 1364, 1948
SatI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
Sau96I	GGNCC	4 cut(s)	274, 617, 1295, 1661
ScaI	AGTACT	1 cut(s)	1709
SchI	GAGTC	6 cut(s)	56, 117, 1166, 1424, 1624, 1877
ScrFI	CCNGG	2 cut(s)	1085, 1543
SduI	GDGCHC	1 cut(s)	1549
SfaNI	GCATC	5 cut(s)	224, 387, 478, 1430, 1465
SfcI	CTRYAG	3 cut(s)	971, 1099, 1930
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	3 cut(s)	274, 617, 1295
SmiMI	CAYNNNNRTG	2 cut(s)	1524, 1638
SmlI	CTYRAG	2 cut(s)	526, 602
SmoI	CTYRAG	2 cut(s)	526, 602
Sse9I	AATT	9 cut(s)	392, 621, 708, 954, 1071, 1138, 1193, 1593, 1760
SsiI	CCGC	3 cut(s)	142, 1406, 1906
SspMI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
StyD4I	CCNGG	2 cut(s)	1083, 1541
StyI	CCWWGG	1 cut(s)	1254
TaaI	ACNGT	4 cut(s)	350, 843, 1712, 1875
TaiI	ACGT	3 cut(s)	364, 499, 652
TaqI	TCGA	3 cut(s)	164, 493, 837
TasI	AATT	9 cut(s)	392, 621, 708, 954, 1071, 1138, 1193, 1593, 1760
TatI	WGTACW	2 cut(s)	202, 1707
Tru1I	TTAA	5 cut(s)	561, 624, 1197, 1364, 1948
Tru9I	TTAA	5 cut(s)	561, 624, 1197, 1364, 1948
TseFI	GTSAC	5 cut(s)	338, 1022, 1031, 1640, 1745
TseI	GCWGC	6 cut(s)	400, 469, 779, 973, 1450, 1478
Tsp45I	GTSAC	5 cut(s)	338, 1022, 1031, 1640, 1745
TspDTI	ATGAA	8 cut(s)	417, 560, 738, 804, 876, 1407, 1443, 1638
TspGWI	ACGGA	3 cut(s)	1028, 1769, 1933
Van91I	CCANNNNNTGG	2 cut(s)	155, 626
VpaK11BI	GGWCC	3 cut(s)	274, 617, 1295
VspI	ATTAAT	1 cut(s)	624
XagI	CCTNNNNNAGG	1 cut(s)	1754
XapI	RAATTY	5 cut(s)	954, 1138, 1193, 1593, 1760
XmiI	GTMKAC	1 cut(s)	989
XmnI	GAANNNNTTC	1 cut(s)	1925
XspI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
ZrmI	AGTACT	1 cut(s)	1709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.