Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Reverse (-)

1634492 .. 1638972

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTGGCCAATGTTTCTAGTGCAGATCCAGGAAGAGCTGCCTGCATGTTTCTCTTGGAGGAAGTAACACCTTCATCTGTTGTGATTATAATGATCGGACTGTCTAATGCATCATCTGATGACATCAAGGGCTACAAGCTCTTGTATTACAAGAGCGGAGAAGAATCACACACAAAAGAGCCTAATTGTACCTTTTCAAGATCTCAGAGAAGAATTTTGATCTCCAATTTGCAGCCTTGCACAGAGTATACATTAAGGATAATATCTGATACTGAGGCTGGTGATTCACCCTTAGGGAAAGTCGTTCACCAAGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

106

Amino Acids

11.61

Weight (kDa)

5.27

Isoelectric Point (pI)

68.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fn3_VIN3	PF23376	18 - 95	2.5e-23	VIN3-like, fibronectin type-III domain
fn3	PF00041	22 - 103	2.6e-07	Fibronectin type III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	248
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	38, 139
AluI	AGCT	2 cut(s)	38, 139
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	38, 232
ApoI	RAATTY	1 cut(s)	213
AsuHPI	GGTGA	3 cut(s)	279, 293, 299
AxyI	CCTNAGG	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	25, 244
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	18
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	39, 233
BlsI	GCNGC	2 cut(s)	40, 234
Bme1390I	CCNGG	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	119
Bse21I	CCTNAGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	218, 264
BseXI	GCAGC	2 cut(s)	25, 244
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	25, 93, 200, 219
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	217, 265
BspPI	GGATC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	156
BssMI	GATC	4 cut(s)	25, 93, 200, 219
BssNAI	GTATAC	1 cut(s)	249
Bst1107I	GTATAC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	3 cut(s)	204, 273, 292
BstKTI	GATC	4 cut(s)	28, 96, 203, 222
BstMBI	GATC	4 cut(s)	25, 93, 200, 219
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	25, 244
BstX2I	RGATCY	2 cut(s)	25, 200
BstYI	RGATCY	2 cut(s)	25, 200
BstZ17I	GTATAC	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	8, 38, 132, 139, 181, 235, 278
CviKI_1	RGCY	7 cut(s)	8, 38, 132, 139, 181, 235, 278
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	3 cut(s)	204, 273, 292
DpnI	GATC	4 cut(s)	27, 95, 202, 221
DpnII	GATC	4 cut(s)	25, 93, 200, 219
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	112
FaeI	CATG	1 cut(s)	49
FaiI	YATR	3 cut(s)	47, 89, 249
FatI	CATG	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	2 cut(s)	39, 233
Fsp4HI	GCNGC	2 cut(s)	39, 233
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	39, 233
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	2 cut(s)	164, 284
HphI	GGTGA	3 cut(s)	279, 293, 299
Hpy166II	GTNNAC	2 cut(s)	249, 307
Hpy188I	TCNGA	4 cut(s)	98, 118, 207, 268
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	2 cut(s)	249, 307
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	23, 45, 110, 232, 240
HpyF3I	CTNAG	3 cut(s)	204, 273, 292
Hsp92II	CATG	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	25, 93, 200, 219
LguI	GCTCTTC	1 cut(s)	28
LpnPI	CCDG	4 cut(s)	15, 42, 55, 264
Lsp1109I	GCAGC	2 cut(s)	25, 244
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	4 cut(s)	27, 95, 202, 221
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	4 cut(s)	25, 93, 200, 219
MboII	GAAGA	3 cut(s)	45, 173, 222
MflI	RGATCY	2 cut(s)	25, 200
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	3 cut(s)	184, 213, 226
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	2 cut(s)	52, 268
Mox20I	TGGCCA	1 cut(s)	8
Mph1103I	ATGCAT	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NdeII	GATC	4 cut(s)	25, 93, 200, 219
NlaIII	CATG	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	164, 284
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	40, 234
PsiI	TTATAA	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	25, 200
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	39, 233
Sau3AI	GATC	4 cut(s)	25, 93, 200, 219
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	4 cut(s)	40, 73, 141, 194
SfaNI	GCATC	1 cut(s)	119
Sse9I	AATT	3 cut(s)	184, 213, 226
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	102
TasI	AATT	3 cut(s)	184, 213, 226
TfiI	GAWTC	2 cut(s)	164, 284
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	2 cut(s)	38, 232
TspDTI	ATGAA	1 cut(s)	63
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.