Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

11904218 .. 11906767

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAATTAGAAGATAAATTTGTTAGTAAAGTTTCTGGTGTTCAAAGCCTCTCTTCCAGCGTGCAAAGCACTCCCGAGAAGAATGGGCATTCAGATGATGCTTCACGAAGTCCAGAGCTTCTTCAAGAGTTTCTGAAATCAGGTCCCAAGAAGGAACTCCTTCGAACTTGCTTTGAAAAGGACAAGAAAAACTTGAATTCATCAAAAAATAAAATGACTGAACCTTTGAAGACTACTAACAAGACGAGTAAGAAGCAGGATGCAAAGAAAGCTTCTTCTAGTCCAAATATTCTTCCTAAAAAGCAAGGCAGAAAGGGGGAAAATCCTATGCGACTCTCACCAGCTTCTGATCAGTCTCCAGAATTTGGATCTTCAAGCTCATGGATCTGTAAAAACTCTGCTTGTAGAGCTGTTCTATCCATAGATGACGCATTTTGCAGGAGGTGCTCTTGCTGTATCTGTCATTTGTTTGATGACAACAAGGACCCTAGCCTTTGGTTAGTGTGCACATCTGAATCTGGTGGCGGAGATTCCTGTGGGTTGTCTTGTCACATCGAGTGCGCCCTTCAACGTGCAAAGGTGGGAGTTGTTGATCTCGGGCAATTGATGCAGCTAGATGGTAGTTATTGTTGCGCTTCCTGTGGTAAAGTTTCGGGGATACTGGGAAATTGGAAGAAGCAGCTCATTGTGGCAAAGGATGCTCGCCGTGTTGATGTACTTTGTTATAGGATATACTTGAGTTACAGACTCTTGCATGGGACTTCAAAATTTAATGAACTACATGAAATTGTGAAAGAAGCAAAGTCTAAGCTAGAGACAGAAGTTGGCCCAGTGAATGGCGTTTCTGCAAAGATGGCACGAGGAATAGTCAGCAGACTATCAATTGCTGGTGACGTGCTGAAACTCTGCTCCCTTGCAATTCAGAAAGCAGATGAATGGCTGGCCAATGTTTCTAATGCGGATCAAAATTCCCGAGAGGGTTCACTTCCTGCAGCATGCAAGTTTATTTTTCAAGAAGTGGCATCATCCTCTGTTGTGATTATATTGATTGAATTGTCTAATGCATCGTCTGACGACATTAAGGGCTACAAGCTCTGGTATTACAAGAGTCGAGAAGAATCACACACAAAAGAGCCTAGTTGTATCTTTCCAAGATCGATCAGAGAAGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

392

Amino Acids

42.95

Weight (kDa)

8.8

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	130 - 248	3.3e-33	PHD - plant homeodomain finger protein
Fn3_VIN3	PF23376	337 - 386	1.2e-11	VIN3-like, fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	365, 836
AciI	CCGC	2 cut(s)	525, 959
AclWI	GGATC	3 cut(s)	376, 392, 969
AcoI	YGGCCR	1 cut(s)	942
AcsI	RAATTY	5 cut(s)	17, 196, 362, 767, 967
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	2 cut(s)	365, 836
AjiI	CACGTC	1 cut(s)	895
AluBI	AGCT	9 cut(s)	118, 272, 344, 378, 410, 613, 682, 811, 1093
AluI	AGCT	9 cut(s)	118, 272, 344, 378, 410, 613, 682, 811, 1093
Alw21I	GWGCWC	2 cut(s)	449, 509
Alw26I	GTCTC	2 cut(s)	360, 809
Alw44I	GTGCAC	1 cut(s)	505
AlwI	GGATC	3 cut(s)	376, 392, 969
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	3 cut(s)	74, 596, 972
AoxI	GGCC	2 cut(s)	826, 942
ApaLI	GTGCAC	1 cut(s)	505
ApeKI	GCWGC	3 cut(s)	610, 679, 992
ApoI	RAATTY	5 cut(s)	17, 196, 362, 767, 967
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
Asp700I	GAANNNNTTC	1 cut(s)	159
AspLEI	GCGC	2 cut(s)	563, 635
AspS9I	GGNCC	3 cut(s)	143, 484, 827
AsuHPI	GGTGA	2 cut(s)	330, 902
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	3 cut(s)	74, 596, 972
AvaII	GGWCC	2 cut(s)	143, 484
BaeGI	GKGCMC	1 cut(s)	509
BalI	TGGCCA	1 cut(s)	944
BauI	CACGAG	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	449, 509
BbvI	GCAGC	3 cut(s)	622, 691, 1004
BccI	CCATC	2 cut(s)	611, 847
BceAI	ACGGC	1 cut(s)	690
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	360, 809
BfaI	CTAG	5 cut(s)	279, 489, 614, 812, 1137
BfmI	CTRYAG	1 cut(s)	990
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	3 cut(s)	611, 680, 993
BlsI	GCNGC	3 cut(s)	612, 681, 994
Bme18I	GGWCC	2 cut(s)	143, 484
BmeT110I	CYCGRG	3 cut(s)	74, 596, 972
BmgBI	CACGTC	1 cut(s)	895
BmgT120I	GGNCC	3 cut(s)	143, 484, 827
BmiI	GGNNCC	2 cut(s)	145, 486
BmrI	ACTGGG	2 cut(s)	671, 824
BmsI	GCATC	6 cut(s)	88, 250, 597, 688, 1031, 1073
BmuI	ACTGGG	2 cut(s)	671, 824
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	757
Bsa29I	ATCGAT	1 cut(s)	1157
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 836
Bse1I	ACTGG	2 cut(s)	666, 830
BseCI	ATCGAT	1 cut(s)	1157
BseGI	GGATG	3 cut(s)	265, 703, 1025
BseLI	CCNNNNNNNGG	2 cut(s)	365, 836
BseNI	ACTGG	2 cut(s)	666, 830
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	3 cut(s)	622, 691, 1004
BshFI	GGCC	2 cut(s)	828, 944
BshVI	ATCGAT	1 cut(s)	1157
BsiHKAI	GWGCWC	2 cut(s)	449, 509
BsiHKCI	CYCGRG	3 cut(s)	74, 596, 972
BslFI	GGGAC	2 cut(s)	129, 772
BslI	CCNNNNNNNGG	2 cut(s)	365, 836
BsmAI	GTCTC	2 cut(s)	360, 809
BsmFI	GGGAC	2 cut(s)	129, 772
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	828, 944
BsoBI	CYCGRG	3 cut(s)	74, 596, 972
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	449, 509
Bsp143I	GATC	7 cut(s)	349, 368, 384, 592, 961, 1154, 1158
BspACI	CCGC	2 cut(s)	525, 959
BspANI	GGCC	2 cut(s)	828, 944
BspDI	ATCGAT	1 cut(s)	1157
BspLI	GGNNCC	2 cut(s)	145, 486
BspMAI	CTGCAG	1 cut(s)	994
BspPI	GGATC	3 cut(s)	376, 392, 969
BspT104I	TTCGAA	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	666, 830
BssMI	GATC	7 cut(s)	349, 368, 384, 592, 961, 1154, 1158
BssSI	CACGAG	1 cut(s)	858
Bst2BI	CACGAG	1 cut(s)	858
Bst6I	CTCTTC	1 cut(s)	58
BstAPI	GCANNNNNTGC	3 cut(s)	444, 607, 698
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	4 cut(s)	62, 703, 942, 997
BstDEI	CTNAG	1 cut(s)	807
BstF5I	GGATG	3 cut(s)	265, 703, 1025
BstHHI	GCGC	2 cut(s)	563, 635
BstKTI	GATC	7 cut(s)	352, 371, 387, 595, 964, 1157, 1161
BstMAI	GTCTC	2 cut(s)	360, 809
BstMBI	GATC	7 cut(s)	349, 368, 384, 592, 961, 1154, 1158
BstMWI	GCNNNNNNNGC	7 cut(s)	66, 269, 407, 444, 607, 698, 854
BstNSI	RCATGY	1 cut(s)	999
BstSFI	CTRYAG	1 cut(s)	990
BstSLI	GKGCMC	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	622, 691, 1004
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	2 cut(s)	368, 384
BstYI	RGATCY	2 cut(s)	368, 384
Bsu15I	ATCGAT	1 cut(s)	1157
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	828, 944
BsuTUI	ATCGAT	1 cut(s)	1157
BtrI	CACGTC	1 cut(s)	895
BtsCI	GGATG	3 cut(s)	265, 703, 1025
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	4 cut(s)	62, 703, 942, 997
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	2 cut(s)	563, 635
Cfr13I	GGNCC	3 cut(s)	143, 484, 827
ClaI	ATCGAT	1 cut(s)	1157
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	716
CviAII	CATG	4 cut(s)	381, 755, 782, 996
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	1 cut(s)	807
DpnI	GATC	7 cut(s)	351, 370, 386, 594, 963, 1156, 1160
DpnII	GATC	7 cut(s)	349, 368, 384, 592, 961, 1154, 1158
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	143, 484
Eco88I	CYCGRG	3 cut(s)	74, 596, 972
EcoO109I	RGGNCCY	2 cut(s)	143, 484
EcoRI	GAATTC	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	1066
FaeI	CATG	4 cut(s)	384, 758, 785, 999
FaiI	YATR	9 cut(s)	329, 382, 422, 726, 733, 756, 783, 997, 1043
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 176, 208
FaqI	GGGAC	2 cut(s)	129, 772
FatI	CATG	4 cut(s)	380, 754, 781, 995
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	611, 680, 993
FokI	GGATG	3 cut(s)	272, 710, 1012
Fsp4HI	GCNGC	3 cut(s)	611, 680, 993
FspBI	CTAG	5 cut(s)	279, 489, 614, 812, 1137
GlaI	GCGC	2 cut(s)	562, 634
GluI	GCNGC	3 cut(s)	611, 680, 993
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	828, 944
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	2 cut(s)	563, 635
Hin1II	CATG	4 cut(s)	384, 758, 785, 999
Hin6I	GCGC	2 cut(s)	561, 633
HinP1I	GCGC	2 cut(s)	561, 633
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	6 cut(s)	333, 515, 530, 747, 1108, 1118
HphI	GGTGA	2 cut(s)	330, 902
Hpy166II	GTNNAC	2 cut(s)	507, 983
Hpy188I	TCNGA	7 cut(s)	94, 135, 349, 514, 924, 1072, 1163
Hpy188III	TCNNGA	8 cut(s)	74, 105, 113, 125, 359, 972, 1013, 1112
Hpy8I	GTNNAC	2 cut(s)	507, 983
HpyAV	CCTTC	4 cut(s)	145, 170, 575, 1160
HpyCH4IV	ACGT	2 cut(s)	571, 894
HpyF10VI	GCNNNNNNNGC	7 cut(s)	66, 269, 407, 444, 607, 698, 854
HpyF3I	CTNAG	1 cut(s)	807
HpySE526I	ACGT	2 cut(s)	571, 894
Hsp92II	CATG	4 cut(s)	384, 758, 785, 999
HspAI	GCGC	2 cut(s)	561, 633
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	7 cut(s)	349, 368, 384, 592, 961, 1154, 1158
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	3 cut(s)	622, 691, 1004
LweI	GCATC	6 cut(s)	88, 250, 597, 688, 1031, 1073
MaeI	CTAG	5 cut(s)	279, 489, 614, 812, 1137
MaeII	ACGT	2 cut(s)	571, 894
MaeIII	GTNAC	3 cut(s)	548, 740, 890
MalI	GATC	7 cut(s)	351, 370, 386, 594, 963, 1156, 1160
MboI	GATC	7 cut(s)	349, 368, 384, 592, 961, 1154, 1158
MfeI	CAATTG	2 cut(s)	602, 882
MflI	RGATCY	2 cut(s)	368, 384
MhlI	GDGCHC	2 cut(s)	449, 509
MlsI	TGGCCA	1 cut(s)	944
MluNI	TGGCCA	1 cut(s)	944
MlyI	GAGTC	3 cut(s)	327, 741, 1117
MnlI	CCTC	5 cut(s)	59, 435, 854, 970, 1039
Mox20I	TGGCCA	1 cut(s)	944
Mph1103I	ATGCAT	1 cut(s)	1066
MroXI	GAANNNNTTC	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	944
MseI	TTAA	2 cut(s)	771, 1080
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	944
MunI	CAATTG	2 cut(s)	602, 882
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	7 cut(s)	66, 269, 407, 444, 607, 698, 854
NdeII	GATC	7 cut(s)	349, 368, 384, 592, 961, 1154, 1158
NlaIII	CATG	4 cut(s)	384, 758, 785, 999
NlaIV	GGNNCC	2 cut(s)	145, 486
NmuCI	GTSAC	2 cut(s)	548, 890
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	999
NspV	TTCGAA	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	999
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	515, 530, 1118
PflMI	CCANNNNNTGG	2 cut(s)	365, 836
PkrI	GCNGC	3 cut(s)	612, 681, 994
PleI	GAGTC	3 cut(s)	327, 741, 1116
PpsI	GAGTC	3 cut(s)	327, 741, 1116
PpuMI	RGGWCCY	2 cut(s)	143, 484
Psp5II	RGGWCCY	2 cut(s)	143, 484
PspN4I	GGNNCC	2 cut(s)	145, 486
PspPI	GGNCC	3 cut(s)	143, 484, 827
PspPPI	RGGWCCY	2 cut(s)	143, 484
PstI	CTGCAG	1 cut(s)	994
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	368, 384
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	771, 1080
SatI	GCNGC	3 cut(s)	611, 680, 993
Sau3AI	GATC	7 cut(s)	349, 368, 384, 592, 961, 1154, 1158
Sau96I	GGNCC	3 cut(s)	143, 484, 827
SchI	GAGTC	3 cut(s)	327, 741, 1117
SduI	GDGCHC	2 cut(s)	449, 509
SfaNI	GCATC	6 cut(s)	88, 250, 597, 688, 1031, 1073
SfcI	CTRYAG	1 cut(s)	990
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	2 cut(s)	143, 484
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
SphI	GCATGC	1 cut(s)	999
SsiI	CCGC	2 cut(s)	525, 959
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	5 cut(s)	279, 489, 614, 812, 1137
TaiI	ACGT	2 cut(s)	574, 897
TaqI	TCGA	4 cut(s)	163, 555, 1111, 1157
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	3 cut(s)	515, 530, 1118
Tru1I	TTAA	2 cut(s)	771, 1080
Tru9I	TTAA	2 cut(s)	771, 1080
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	2 cut(s)	548, 890
TseI	GCWGC	3 cut(s)	610, 679, 992
Tsp45I	GTSAC	2 cut(s)	548, 890
TspDTI	ATGAA	4 cut(s)	189, 789, 798, 948
TspRI	CASTG	1 cut(s)	837
Van91I	CCANNNNNTGG	2 cut(s)	365, 836
VneI	GTGCAC	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	143, 484
XapI	RAATTY	5 cut(s)	17, 196, 362, 767, 967
XceI	RCATGY	1 cut(s)	999
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	5 cut(s)	279, 489, 614, 812, 1137
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.