Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

4716506 .. 4722626

Gene Structure 6121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG058300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGCTGAACTTTTGAAGACTACTAACAAGACAAATAAGAAGCAGGAGTCAAAAAAAGCTTCTTCTAGTCCAAATAATCATCCTCCTAAAAAGCAATCCAGAAAGGGGGAAAATCCCATCCGACTCTCACCGGCTTCTGAGCAGTCTCCAGATTTTGGATGTTCGAACTCATGGATCTGTAAAAACTCTGCTTGTAGAGCTGTTCTATCCATAGACAACACATTCTGCAAGAGATGCTCCTGCTGTATTTGTCATTTGTTTGATGACAACAAGGACCCAAGTCTTTGGTTAGTATGCACATCTGAATCTGGTGAGGGAGATTCCTGTGGGTTATCTTGTCACATTGACTGCGCGCTTAGACGTGAAAAGGTGGGAGTTGTTGATCTTGGGCAATTGATGCAGCTAGATGGTAGTTATTGTTGTGCTTCATGTGGTAAAGTTTCTGGGATACTTGGGATTTGGAAGAAGCAGCTACTTGTAGCAAAGGATGCTCGACGTGTTGATGTTCTTTGGGACAGGATATGCTTGAGTTATAGGCTTCTGGATGGGACTTCAAGGTTTAAAGAACTTCATGATATTGTGAAGGAAGCGAAGACTAAACTCGAGACAGAACTAGGTCCAATTAATGGAGATTCAGGAACAATGGTACGTGGGATAGTCAGCAGACTATCTATCGCTGGTGATGTGCTAAAACTCTGCTCTCTTGCAATTGAGAAAGCTGATGAATGGTTGGCCAATGTTTCTAGTGCAGACCCAAACAGAGAGGGTTCACTTCCAGCTGCCTGCAAGTTTCTCTTTGAGGAAGTAACACCTTCATCTGTTGTGATTATATTGATCGAACTGTCTAATGCGTCATCTGATGACATCAAGGGATACAAGCTCTGGTATTACAAGAGCAGAGAAGAATCACACACAAAAGAGCCTACTTGTACCTTTTCAAGATCTCAGAGAAGAATTTTGATCTCCAATCTGCAGCCTTGCACAGAGTATACATTTAGGATAATATCTTATACTGAGGCTGGTGACTTGGGTCACTCTGAGGCAAAGTGTTTCACCAAAAGTGTTGAGATAATTCACAAAAACCCGGATTCACCGGTCTGCAGGAATCATAAGAAAGAGAATCCTGTCATTGAGGCAAATTCTAGTGCCATGAGGGAGTCTGAAACTACAACAGCAGTTGTGCCTTCTTCTGAATTTAAAGTTCGTGATCTTGGAAAGATACTTCGTCTGGCTCAGGCTCAACAGAAAGGCTCCTTGGAGGGCTTTTGTAGTGCCAACAAAGAAAAATGTTGTGCACCAAGCAACCCGATAAAAACTGAAACTCTACAAGAAGAGTTGCCTTCTGTTCCACGGGGGCTTGACTTAAATGTTCTTTCAATGCCCGATCTGAATGAAGAGCTAACCCCGCCCTTTGAGTCCTCCAGAGATGAAGATAATGGATGCACTTTGCAGCAGGCTGTGGAGGCAGATGATGATGCTGCTTCTCATGACATGGTGAAGAACGGCCTAGCAAGATCACATGGTAGTGGTGATTCACAGACCTGGACTCATGGGATTACTGGAGATGTCCCTGCTGTCGATTCTCGGGCAGAAATTTGCAGGAAGAGGAAGGGAAACTCAAACGAAGAGACCCATGATTGTGACAGCACCCTGATAAATGGGCCACCATTGCAAAATGGTTCTTGTTGCTTGGACGAGAACTTTGAGTACTGTGTGAAAATAATCAGGTGGCTGGAATGCGAGGGTCACCTTACGGAGGAATTCAGATTGAAGTTGCTAACATGGTTCAGTTTGAGATCAACTGAGCAAGAGCGTAGGGTGGTCAACACCTTTATTCAAACTATGATTGATGATCCAAGTAGCTTGGCAGGACAGTTAGTTGACTCCTTTGCAGATATCATATCCCGCAAGAGGCAACGGAACGGATTCTGCAGTAAGCTGTGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

649

Amino Acids

72.06

Weight (kDa)

6.04

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	60 - 178	1.3e-32	PHD - plant homeodomain finger protein
Fn3_VIN3	PF23376	265 - 352	2.8e-32	VIN3-like, fibronectin type-III domain
fn3	PF00041	266 - 346	7.9e-07	Fibronectin type III domain
VIN3_C	PF23380	565 - 638	1.3e-39	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	155, 626
AccI	GTMKAC	1 cut(s)	989
AccII	CGCG	1 cut(s)	353
AciI	CCGC	2 cut(s)	1406, 1906
AclWI	GGATC	2 cut(s)	182, 1847
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	5 cut(s)	954, 1138, 1193, 1593, 1760
AfaI	GTAC	3 cut(s)	648, 931, 1709
AfiI	CCNNNNNNNGG	5 cut(s)	105, 155, 626, 1756, 1911
AflIII	ACRYGT	1 cut(s)	496
AgeI	ACCGGT	1 cut(s)	1093
AgsI	TTSAA	6 cut(s)	16, 555, 939, 1377, 1771, 1838
AjiI	CACGTC	2 cut(s)	362, 497
AjnI	CCWGG	1 cut(s)	1541
AjuI	GAANNNNNNNTTGG	2 cut(s)	1238, 1270
Alw21I	GWGCWC	1 cut(s)	1297
Alw26I	GTCTC	3 cut(s)	150, 599, 1622
Alw44I	GTGCAC	1 cut(s)	1293
AlwI	GGATC	2 cut(s)	182, 1847
Ama87I	CYCGRG	2 cut(s)	602, 1584
AoxI	GGCC	3 cut(s)	732, 1504, 1661
ApaLI	GTGCAC	1 cut(s)	1293
ApeKI	GCWGC	6 cut(s)	400, 469, 779, 973, 1450, 1478
ApoI	RAATTY	5 cut(s)	954, 1138, 1193, 1593, 1760
ArsI	GACNNNNNNTTYG	2 cut(s)	1685, 1717
AseI	ATTAAT	1 cut(s)	624
AsiGI	ACCGGT	1 cut(s)	1093
Asp700I	GAANNNNTTC	1 cut(s)	1925
AspLEI	GCGC	2 cut(s)	353, 355
AspS9I	GGNCC	3 cut(s)	274, 617, 1661
AsuC2I	CCSGG	1 cut(s)	1085
AsuHPI	GGTGA	9 cut(s)	120, 323, 692, 1034, 1045, 1083, 1507, 1541, 1739
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	2 cut(s)	602, 1584
AvaII	GGWCC	2 cut(s)	274, 617
BaeGI	GKGCMC	1 cut(s)	1297
BalI	TGGCCA	1 cut(s)	734
BbsI	GAAGAC	2 cut(s)	23, 599
Bbv12I	GWGCWC	1 cut(s)	1297
BbvI	GCAGC	6 cut(s)	412, 481, 766, 985, 1462, 1465
BccI	CCATC	3 cut(s)	125, 401, 539
BceAI	ACGGC	1 cut(s)	1519
BciT130I	CCWGG	1 cut(s)	1543
BciVI	GTATCC	2 cut(s)	441, 866
BcnI	CCSGG	1 cut(s)	1085
BcoDI	GTCTC	3 cut(s)	150, 599, 1622
BfaI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
BfmI	CTRYAG	3 cut(s)	971, 1099, 1930
BfuI	GTATCC	2 cut(s)	441, 866
BglII	AGATCT	1 cut(s)	941
BisI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
BlsI	GCNGC	6 cut(s)	402, 471, 781, 975, 1452, 1480
BmcAI	AGTACT	1 cut(s)	1709
Bme1390I	CCNGG	2 cut(s)	1085, 1543
Bme18I	GGWCC	2 cut(s)	274, 617
BmeT110I	CYCGRG	2 cut(s)	602, 1584
BmgBI	CACGTC	2 cut(s)	362, 497
BmgT120I	GGNCC	3 cut(s)	274, 617, 1661
BmiI	GGNNCC	2 cut(s)	276, 1252
BmrFI	CCNGG	2 cut(s)	1085, 1543
BmsI	GCATC	5 cut(s)	224, 387, 478, 1430, 1465
BoxI	GACNNNNGTC	2 cut(s)	279, 1029
BpiI	GAAGAC	2 cut(s)	23, 599
BpmI	CTGGAG	3 cut(s)	132, 1405, 1581
Bpu10I	CCTNAGC	1 cut(s)	1233
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	547
BpuMI	CCSGG	1 cut(s)	1085
BsaAI	YACGTR	1 cut(s)	650
BsaI	GGTCTC	1 cut(s)	1622
BsaJI	CCNNGG	2 cut(s)	1254, 1349
BsaWI	WCCGGW	1 cut(s)	1093
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 155, 626, 1756, 1911
Bse118I	RCCGGY	2 cut(s)	130, 1093
Bse1I	ACTGG	1 cut(s)	1564
Bse3DI	GCAATG	1 cut(s)	1667
BseBI	CCWGG	1 cut(s)	1543
BseDI	CCNNGG	2 cut(s)	1254, 1349
BseGI	GGATG	6 cut(s)	79, 117, 164, 493, 550, 1445
BseLI	CCNNNNNNNGG	5 cut(s)	105, 155, 626, 1756, 1911
BseMI	GCAATG	1 cut(s)	1667
BseMII	CTCAG	6 cut(s)	129, 959, 1005, 1029, 1247, 1794
BseNI	ACTGG	1 cut(s)	1564
BsePI	GCGCGC	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	1297
BseXI	GCAGC	6 cut(s)	412, 481, 766, 985, 1462, 1465
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	3 cut(s)	734, 1506, 1663
BshTI	ACCGGT	1 cut(s)	1093
BsiHKAI	GWGCWC	1 cut(s)	1297
BsiHKCI	CYCGRG	2 cut(s)	602, 1584
BsiSI	CCGG	3 cut(s)	131, 1085, 1094
BslFI	GGGAC	3 cut(s)	527, 562, 1553
BslI	CCNNNNNNNGG	5 cut(s)	105, 155, 626, 1756, 1911
BsmAI	GTCTC	3 cut(s)	150, 599, 1622
BsmFI	GGGAC	3 cut(s)	527, 562, 1553
BsmI	GAATGC	1 cut(s)	1742
BsnI	GGCC	3 cut(s)	734, 1506, 1663
Bso31I	GGTCTC	1 cut(s)	1622
BsoBI	CYCGRG	2 cut(s)	602, 1584
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	1297
BspACI	CCGC	2 cut(s)	1406, 1906
BspANI	GGCC	3 cut(s)	734, 1506, 1663
BspCNI	CTCAG	6 cut(s)	130, 958, 1006, 1030, 1246, 1795
BspFNI	CGCG	1 cut(s)	353
BspHI	TCATGA	2 cut(s)	571, 1486
BspLI	GGNNCC	2 cut(s)	276, 1252
BspMAI	CTGCAG	3 cut(s)	975, 1103, 1934
BspPI	GGATC	2 cut(s)	182, 1847
BspQI	GCTCTTC	1 cut(s)	1389
BspT104I	TTCGAA	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	1622
BsrDI	GCAATG	1 cut(s)	1667
BsrFI	RCCGGY	2 cut(s)	130, 1093
BsrI	ACTGG	1 cut(s)	1564
BssAI	RCCGGY	2 cut(s)	130, 1093
BssECI	CCNNGG	2 cut(s)	1254, 1349
BssHII	GCGCGC	1 cut(s)	351
BssNAI	GTATAC	1 cut(s)	990
BssT1I	CCWWGG	1 cut(s)	1254
Bst1107I	GTATAC	1 cut(s)	990
Bst2UI	CCWGG	1 cut(s)	1543
Bst4CI	ACNGT	3 cut(s)	843, 1712, 1875
Bst6I	CTCTTC	4 cut(s)	1326, 1389, 1598, 1620
BstAPI	GCANNNNNTGC	3 cut(s)	234, 397, 488
BstBAI	YACGTR	1 cut(s)	650
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	353, 784, 1455
BstDEI	CTNAG	7 cut(s)	138, 356, 945, 1014, 1038, 1233, 1803
BstDSI	CCRYGG	1 cut(s)	1349
BstEII	GGTNACC	1 cut(s)	1745
BstENI	CCTNNNNNAGG	1 cut(s)	1754
BstF5I	GGATG	6 cut(s)	79, 117, 164, 493, 550, 1445
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	353, 355
BstMAI	GTCTC	3 cut(s)	150, 599, 1622
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 234, 397, 488, 1405, 1463, 1669
BstNI	CCWGG	1 cut(s)	1543
BstPAI	GACNNNNGTC	2 cut(s)	279, 1029
BstPI	GGTNACC	1 cut(s)	1745
BstSCI	CCNGG	2 cut(s)	1083, 1541
BstSFI	CTRYAG	3 cut(s)	971, 1099, 1930
BstSLI	GKGCMC	1 cut(s)	1297
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	6 cut(s)	412, 481, 766, 985, 1462, 1465
BstV2I	GAAGAC	2 cut(s)	23, 599
BstX2I	RGATCY	2 cut(s)	174, 941
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	2 cut(s)	174, 941
BstZ17I	GTATAC	1 cut(s)	990
BsuI	GTATCC	2 cut(s)	441, 866
BsuRI	GGCC	3 cut(s)	734, 1506, 1663
BtgI	CCRYGG	1 cut(s)	1349
BtrI	CACGTC	2 cut(s)	362, 497
BtsCI	GGATG	6 cut(s)	79, 117, 164, 493, 550, 1445
Cac8I	GCNNGC	3 cut(s)	353, 784, 1455
CciI	TCATGA	2 cut(s)	571, 1486
CfoI	GCGC	2 cut(s)	353, 355
Cfr10I	RCCGGY	2 cut(s)	130, 1093
Cfr13I	GGNCC	3 cut(s)	274, 617, 1661
CseI	GACGC	1 cut(s)	840
Csp6I	GTAC	3 cut(s)	647, 930, 1708
CspAI	ACCGGT	1 cut(s)	1093
CviQI	GTAC	3 cut(s)	647, 930, 1708
DdeI	CTNAG	7 cut(s)	138, 356, 945, 1014, 1038, 1233, 1803
DraI	TTTAAA	2 cut(s)	562, 1198
EaeI	YGGCCR	1 cut(s)	732
Eam1104I	CTCTTC	4 cut(s)	1326, 1389, 1598, 1620
EarI	CTCTTC	4 cut(s)	1326, 1389, 1598, 1620
Eco130I	CCWWGG	1 cut(s)	1254
Eco31I	GGTCTC	1 cut(s)	1622
Eco32I	GATATC	1 cut(s)	1897
Eco47I	GGWCC	2 cut(s)	274, 617
Eco88I	CYCGRG	2 cut(s)	602, 1584
Eco91I	GGTNACC	1 cut(s)	1745
EcoNI	CCTNNNNNAGG	1 cut(s)	1754
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	1745
EcoRI	GAATTC	1 cut(s)	1760
EcoRII	CCWGG	1 cut(s)	1541
EcoRV	GATATC	1 cut(s)	1897
EcoT14I	CCWWGG	1 cut(s)	1254
ErhI	CCWWGG	1 cut(s)	1254
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	3 cut(s)	527, 562, 1553
FauI	CCCGC	2 cut(s)	1413, 1913
FblI	GTMKAC	1 cut(s)	989
Fnu4HI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
FokI	GGATG	6 cut(s)	66, 104, 171, 500, 557, 1452
Fsp4HI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
FspBI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
GlaI	GCGC	2 cut(s)	352, 354
GluI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
GsuI	CTGGAG	3 cut(s)	132, 1405, 1581
HaeIII	GGCC	3 cut(s)	734, 1506, 1663
HapII	CCGG	3 cut(s)	131, 1085, 1094
HgaI	GACGC	1 cut(s)	840
HhaI	GCGC	2 cut(s)	353, 355
Hin6I	GCGC	2 cut(s)	351, 353
HinP1I	GCGC	2 cut(s)	351, 353
HincII	GTYRAC	2 cut(s)	1825, 1882
HindII	GTYRAC	2 cut(s)	1825, 1882
HindIII	AAGCTT	1 cut(s)	57
HpaII	CCGG	3 cut(s)	131, 1085, 1094
HphI	GGTGA	9 cut(s)	120, 323, 692, 1034, 1045, 1083, 1507, 1541, 1739
Hpy166II	GTNNAC	5 cut(s)	770, 990, 1295, 1825, 1882
Hpy8I	GTNNAC	5 cut(s)	770, 990, 1295, 1825, 1882
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	5 cut(s)	577, 822, 1194, 1350, 1603
HpyCH4III	ACNGT	3 cut(s)	843, 1712, 1875
HpyCH4IV	ACGT	3 cut(s)	361, 496, 649
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 234, 397, 488, 1405, 1463, 1669
HpyF3I	CTNAG	7 cut(s)	138, 356, 945, 1014, 1038, 1233, 1803
HpySE526I	ACGT	3 cut(s)	361, 496, 649
HspAI	GCGC	2 cut(s)	351, 353
LguI	GCTCTTC	1 cut(s)	1389
LmnI	GCTCC	2 cut(s)	242, 1256
Lsp1109I	GCAGC	6 cut(s)	412, 481, 766, 985, 1462, 1465
LweI	GCATC	5 cut(s)	224, 387, 478, 1430, 1465
MaeI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
MaeII	ACGT	3 cut(s)	361, 496, 649
MaeIII	GTNAC	6 cut(s)	338, 805, 1022, 1031, 1640, 1745
MfeI	CAATTG	2 cut(s)	392, 708
MflI	RGATCY	2 cut(s)	174, 941
MhlI	GDGCHC	1 cut(s)	1297
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	9 cut(s)	392, 621, 708, 954, 1071, 1138, 1193, 1593, 1760
MluNI	TGGCCA	1 cut(s)	734
MlyI	GAGTC	6 cut(s)	56, 117, 1166, 1424, 1540, 1877
MmeI	TCCRAC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	734
MroXI	GAANNNNTTC	1 cut(s)	1925
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	5 cut(s)	561, 624, 1197, 1364, 1948
MslI	CAYNNNNRTG	2 cut(s)	1524, 1638
Msp20I	TGGCCA	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	3 cut(s)	131, 1085, 1094
MspR9I	CCNGG	2 cut(s)	1085, 1543
MunI	CAATTG	2 cut(s)	392, 708
Mva1269I	GAATGC	1 cut(s)	1742
MvaI	CCWGG	1 cut(s)	1543
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	7 cut(s)	197, 234, 397, 488, 1405, 1463, 1669
NciI	CCSGG	1 cut(s)	1085
NlaIV	GGNNCC	2 cut(s)	276, 1252
NmuCI	GTSAC	5 cut(s)	338, 1022, 1031, 1640, 1745
NspV	TTCGAA	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	602
PagI	TCATGA	2 cut(s)	571, 1486
PauI	GCGCGC	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	1389
PctI	GAATGC	1 cut(s)	1742
PdmI	GAANNNNTTC	1 cut(s)	1925
PflMI	CCANNNNNTGG	2 cut(s)	155, 626
PinAI	ACCGGT	1 cut(s)	1093
PkrI	GCNGC	6 cut(s)	402, 471, 781, 975, 1452, 1480
PleI	GAGTC	6 cut(s)	55, 117, 1165, 1423, 1540, 1877
PpsI	GAGTC	6 cut(s)	55, 117, 1165, 1423, 1540, 1877
Ppu21I	YACGTR	1 cut(s)	650
PpuMI	RGGWCCY	1 cut(s)	274
PshAI	GACNNNNGTC	2 cut(s)	279, 1029
PshBI	ATTAAT	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	1541
PspEI	GGTNACC	1 cut(s)	1745
PspGI	CCWGG	1 cut(s)	1541
PspN4I	GGNNCC	2 cut(s)	276, 1252
PspPI	GGNCC	3 cut(s)	274, 617, 1661
PspPPI	RGGWCCY	1 cut(s)	274
PsrI	GAACNNNNNNTAC	2 cut(s)	1691, 1723
PstI	CTGCAG	3 cut(s)	975, 1103, 1934
PsuI	RGATCY	2 cut(s)	174, 941
PteI	GCGCGC	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	3 cut(s)	648, 931, 1709
RsaNI	GTAC	3 cut(s)	647, 930, 1708
RseI	CAYNNNNRTG	2 cut(s)	1524, 1638
SapI	GCTCTTC	1 cut(s)	1389
SaqAI	TTAA	5 cut(s)	561, 624, 1197, 1364, 1948
SatI	GCNGC	6 cut(s)	401, 470, 780, 974, 1451, 1479
Sau96I	GGNCC	3 cut(s)	274, 617, 1661
ScaI	AGTACT	1 cut(s)	1709
SchI	GAGTC	6 cut(s)	56, 117, 1166, 1424, 1540, 1877
ScrFI	CCNGG	2 cut(s)	1085, 1543
SduI	GDGCHC	1 cut(s)	1297
SfaNI	GCATC	5 cut(s)	224, 387, 478, 1430, 1465
SfcI	CTRYAG	3 cut(s)	971, 1099, 1930
Sfr274I	CTCGAG	1 cut(s)	602
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	2 cut(s)	274, 617
SlaI	CTCGAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	2 cut(s)	1524, 1638
SmlI	CTYRAG	2 cut(s)	526, 602
SmoI	CTYRAG	2 cut(s)	526, 602
Sse9I	AATT	9 cut(s)	392, 621, 708, 954, 1071, 1138, 1193, 1593, 1760
SsiI	CCGC	2 cut(s)	1406, 1906
SspMI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
StyD4I	CCNGG	2 cut(s)	1083, 1541
StyI	CCWWGG	1 cut(s)	1254
TaaI	ACNGT	3 cut(s)	843, 1712, 1875
TaiI	ACGT	3 cut(s)	364, 499, 652
TaqI	TCGA	5 cut(s)	164, 493, 603, 837, 1578
TasI	AATT	9 cut(s)	392, 621, 708, 954, 1071, 1138, 1193, 1593, 1760
TatI	WGTACW	1 cut(s)	1707
Tru1I	TTAA	5 cut(s)	561, 624, 1197, 1364, 1948
Tru9I	TTAA	5 cut(s)	561, 624, 1197, 1364, 1948
TseFI	GTSAC	5 cut(s)	338, 1022, 1031, 1640, 1745
TseI	GCWGC	6 cut(s)	400, 469, 779, 973, 1450, 1478
Tsp45I	GTSAC	5 cut(s)	338, 1022, 1031, 1640, 1745
TspDTI	ATGAA	6 cut(s)	417, 560, 738, 804, 1407, 1443
TspGWI	ACGGA	3 cut(s)	1769, 1933, 1938
Van91I	CCANNNNNTGG	2 cut(s)	155, 626
VneI	GTGCAC	1 cut(s)	1293
VpaK11BI	GGWCC	2 cut(s)	274, 617
VspI	ATTAAT	1 cut(s)	624
XagI	CCTNNNNNAGG	1 cut(s)	1754
XapI	RAATTY	5 cut(s)	954, 1138, 1193, 1593, 1760
XhoI	CTCGAG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	989
XmnI	GAANNNNTTC	1 cut(s)	1925
XspI	CTAG	6 cut(s)	66, 404, 614, 744, 1143, 1508
ZrmI	AGTACT	1 cut(s)	1709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.