AT2G19810

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003417
Physical Location & Seq
Forward (+)
8550253 .. 8551979
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19810.1

Sequence Viewer

Length: 1080 bp
ATGATGATCGGAGAATCTCATCGTGGTTTTAATCCAACGGTTCATATTCCTCCATGGCCACTTTCTGAAGATCTAACGGTGTCTGATATTTACGGAAGTCCAGACGGAGGAAGTAGTATGATGGAAGCTTTGGCTGAGTTACAACGTTATCTTCCGTCAAACGAACCGGATCCGGATTCAGATCCGGATCTCTCGGGTCCGGATTCACCAATCGATGCTTATACATGCGATCATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGTGCTCGTGGCCGGAGCCATGATTGGACGGAGTGTCCTTACGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTCATTACTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTTGTTGCAAGAGAGGAGACGCATGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCACCCGGCGCGTTACCGGACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTTGCTCATTCGCCGGATCAGATTAGGGTTTTGCCTAATCAAAGCCCTGATCGTGTTGATTCGTTCGACGTTTTGTCTCCTACGATTCGTAGAGCGTTTCAGTTTTCGATTTCTCCGTCGTCTAACTCGCCGCCGGTGAGTCCACGAGGTGACTCGGACTCGTCGTGTTCGTTACTGAGTCGTTCACTCGGGTCTAATCTGGGAAACGACGTCGTTGCGTCTCTCAGGAATCTGCAACTTAATAAAGTGAAGTCTTCTCTTTCGTCGTCATACAACAATCAAATCGGAGGATACGGATCCGGATTCGGGTCGCCTCGTGGATCGGTTTTGGGTCCTGGTTTCCGTAGCTTACCAACTACACCGACCCGACCTGGTTTTATGAACATTTGGGAGAATGGCTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGGTCGTGAACTGCGAGCGCAGCTGTTCGAGAAGCTGAGCAAAGAGAATTGCATGGGTCGGATTGAACCGGATCCGGATCAGGGAGCGGGTGATACTCCTGATGTCGGGTGGGTCTCTGACTTGGTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006417 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0017148 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032870 GO:0034248 GO:0034249 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044464 GO:0045935 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

359

Amino Acids

39.84

Weight (kDa)

6.02

Isoelectric Point (pI)

63.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 78 - 111 4.5e-21 AtC3H23-like, CCCH zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 726
AccBSI CCGCTC 1 cut(s) 1034
AccII CGCG 1 cut(s) 457
AccIII TCCGGA 5 cut(s) 172, 184, 199, 812, 1021
AciI CCGC 2 cut(s) 644, 1034
AclI AACGTT 1 cut(s) 145
AcoI YGGCCR 2 cut(s) 56, 274
AcuI CTGAAG 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 723
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 4 cut(s) 107, 819, 1028, 1052
AgsI TTSAA 1 cut(s) 1013
AhdI GACNNNNNGTC 2 cut(s) 297, 586
AjnI CCWGG 2 cut(s) 847, 883
AluBI AGCT 5 cut(s) 128, 326, 861, 970, 982
AluI AGCT 5 cut(s) 128, 326, 861, 970, 982
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 5 cut(s) 253, 399, 594, 738, 1066
Ama87I CYCGRG 2 cut(s) 193, 701
Aor13HI TCCGGA 5 cut(s) 172, 184, 199, 812, 1021
AoxI GGCC 2 cut(s) 56, 274
ApeKI GCWGC 1 cut(s) 967
AspLEI GCGC 2 cut(s) 457, 967
AspS9I GGNCC 2 cut(s) 197, 845
AsuC2I CCSGG 2 cut(s) 315, 452
AsuHPI GGTGA 5 cut(s) 198, 440, 661, 674, 1049
AvaI CYCGRG 2 cut(s) 193, 701
AvaII GGWCC 2 cut(s) 197, 845
BalI TGGCCA 1 cut(s) 58
BamHI GGATCC 3 cut(s) 169, 809, 1018
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BauI CACGAG 3 cut(s) 270, 657, 828
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 979
BccI CCATC 2 cut(s) 115, 925
BceAI ACGGC 4 cut(s) 315, 381, 457, 483
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 2 cut(s) 849, 885
BciVI GTATCC 1 cut(s) 797
BcnI CCSGG 2 cut(s) 315, 452
BcoDI GTCTC 5 cut(s) 253, 399, 594, 738, 1066
BfuI GTATCC 1 cut(s) 797
BglII AGATCT 1 cut(s) 70
BisI GCNGC 2 cut(s) 644, 968
BlpI GCTNAGC 1 cut(s) 983
BlsI GCNGC 2 cut(s) 645, 969
Bme1390I CCNGG 4 cut(s) 315, 452, 849, 885
Bme18I GGWCC 2 cut(s) 197, 845
BmeRI GACNNNNNGTC 2 cut(s) 297, 586
BmeT110I CYCGRG 2 cut(s) 193, 701
BmgT120I GGNCC 2 cut(s) 197, 845
BmiI GGNNCC 6 cut(s) 171, 198, 281, 811, 846, 1020
BmrFI CCNGG 4 cut(s) 315, 452, 849, 885
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 983
BpuMI CCSGG 2 cut(s) 315, 452
Bsa29I ATCGAT 1 cut(s) 213
BsaBI GATNNNNATC 4 cut(s) 180, 186, 808, 1023
BsaHI GRCGYC 1 cut(s) 723
BsaI GGTCTC 1 cut(s) 1066
BsaJI CCNNGG 2 cut(s) 53, 341
BsaWI WCCGGW 9 cut(s) 166, 172, 184, 199, 359, 462, 812, 1015, 1021
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 819, 1028, 1052
Bse118I RCCGGY 2 cut(s) 646, 925
Bse8I GATNNNNATC 4 cut(s) 180, 186, 808, 1023
BseAI TCCGGA 5 cut(s) 172, 184, 199, 812, 1021
BseBI CCWGG 2 cut(s) 849, 885
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 53, 341
BseGI GGATG 2 cut(s) 246, 310
BseJI GATNNNNATC 4 cut(s) 180, 186, 808, 1023
BseLI CCNNNNNNNGG 4 cut(s) 107, 819, 1028, 1052
BseMII CTCAG 6 cut(s) 126, 366, 482, 680, 751, 974
BseRI GAGGAG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 979
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 58, 276
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 2 cut(s) 193, 701
BslI CCNNNNNNNGG 4 cut(s) 107, 819, 1028, 1052
BsmAI GTCTC 5 cut(s) 253, 399, 594, 738, 1066
BsmBI CGTCTC 3 cut(s) 253, 399, 738
BsnI GGCC 2 cut(s) 58, 276
Bso31I GGTCTC 1 cut(s) 1066
BsoBI CYCGRG 2 cut(s) 193, 701
Bsp1286I GDGCHC 1 cut(s) 271
Bsp13I TCCGGA 5 cut(s) 172, 184, 199, 812, 1021
Bsp1720I GCTNAGC 1 cut(s) 983
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 2 cut(s) 644, 1034
BspANI GGCC 2 cut(s) 58, 276
BspCNI CTCAG 6 cut(s) 127, 367, 481, 681, 750, 975
BspDI ATCGAT 1 cut(s) 213
BspEI TCCGGA 5 cut(s) 172, 184, 199, 812, 1021
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 6 cut(s) 171, 198, 281, 811, 846, 1020
BspTNI GGTCTC 1 cut(s) 1066
BsrBI CCGCTC 1 cut(s) 1034
BsrFI RCCGGY 2 cut(s) 646, 925
BssAI RCCGGY 2 cut(s) 646, 925
BssECI CCNNGG 2 cut(s) 53, 341
BssNI GRCGYC 1 cut(s) 723
BssSI CACGAG 3 cut(s) 270, 657, 828
BssT1I CCWWGG 1 cut(s) 53
Bst2BI CACGAG 3 cut(s) 270, 657, 828
Bst2UI CCWGG 2 cut(s) 849, 885
Bst4CI ACNGT 4 cut(s) 40, 79, 485, 494
BstACI GRCGYC 1 cut(s) 723
BstC8I GCNNGC 2 cut(s) 328, 963
BstDEI CTNAG 6 cut(s) 135, 375, 468, 689, 737, 983
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 246, 310
BstFNI CGCG 1 cut(s) 457
BstHHI GCGC 2 cut(s) 457, 967
BstMAI GTCTC 5 cut(s) 253, 399, 594, 738, 1066
BstMWI GCNNNNNNNGC 1 cut(s) 967
BstNI CCWGG 2 cut(s) 849, 885
BstNSI RCATGY 2 cut(s) 228, 414
BstSCI CCNGG 4 cut(s) 313, 450, 847, 883
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 979
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 6 cut(s) 70, 169, 181, 187, 809, 1018
BstYI RGATCY 6 cut(s) 70, 169, 181, 187, 809, 1018
Bsu15I ATCGAT 1 cut(s) 213
BsuI GTATCC 1 cut(s) 797
BsuRI GGCC 2 cut(s) 58, 276
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 944
BtsCI GGATG 2 cut(s) 246, 310
Cac8I GCNNGC 2 cut(s) 328, 963
CfoI GCGC 2 cut(s) 457, 967
Cfr10I RCCGGY 2 cut(s) 646, 925
Cfr13I GGNCC 2 cut(s) 197, 845
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 2 cut(s) 416, 720
CsiI ACCWGGT 1 cut(s) 883
Csp6I GTAC 1 cut(s) 363
CviAII CATG 6 cut(s) 54, 225, 284, 411, 425, 1000
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 6 cut(s) 135, 375, 468, 689, 737, 983
DraI TTTAAA 1 cut(s) 253
DraIII CACNNNGTG 1 cut(s) 662
DriI GACNNNNNGTC 2 cut(s) 297, 586
EaeI YGGCCR 2 cut(s) 56, 274
Eam1105I GACNNNNNGTC 2 cut(s) 297, 586
Eco130I CCWWGG 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 1066
Eco47I GGWCC 2 cut(s) 197, 845
Eco57I CTGAAG 1 cut(s) 87
Eco88I CYCGRG 2 cut(s) 193, 701
EcoO109I RGGNCCY 1 cut(s) 845
EcoRII CCWGG 2 cut(s) 847, 883
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
Esp3I CGTCTC 3 cut(s) 253, 399, 738
FaeI CATG 6 cut(s) 57, 228, 287, 414, 428, 1003
FatI CATG 6 cut(s) 53, 224, 283, 410, 424, 999
FauI CCCGC 1 cut(s) 1027
Fnu4HI GCNGC 2 cut(s) 644, 968
FokI GGATG 2 cut(s) 253, 297
Fsp4HI GCNGC 2 cut(s) 644, 968
GlaI GCGC 2 cut(s) 456, 966
GluI GCNGC 2 cut(s) 644, 968
HaeIII GGCC 2 cut(s) 58, 276
HgaI GACGC 2 cut(s) 416, 720
HhaI GCGC 2 cut(s) 457, 967
Hin1I GRCGYC 1 cut(s) 723
Hin1II CATG 6 cut(s) 57, 228, 287, 414, 428, 1003
Hin6I GCGC 2 cut(s) 455, 965
HinP1I GCGC 2 cut(s) 455, 965
HindIII AAGCTT 1 cut(s) 126
HphI GGTGA 5 cut(s) 198, 440, 661, 674, 1049
Hpy166II GTNNAC 3 cut(s) 656, 698, 956
Hpy8I GTNNAC 3 cut(s) 656, 698, 956
Hpy99I CGWCG 8 cut(s) 336, 504, 584, 634, 679, 725, 728, 781
HpyCH4III ACNGT 4 cut(s) 40, 79, 485, 494
HpyCH4IV ACGT 4 cut(s) 145, 262, 582, 723
HpyCH4V TGCA 3 cut(s) 396, 748, 999
HpyF10VI GCNNNNNNNGC 1 cut(s) 967
HpyF3I CTNAG 6 cut(s) 135, 375, 468, 689, 737, 983
HpySE526I ACGT 4 cut(s) 145, 262, 582, 723
Hsp92I GRCGYC 1 cut(s) 723
Hsp92II CATG 6 cut(s) 57, 228, 287, 414, 428, 1003
HspAI GCGC 2 cut(s) 455, 965
Kpn2I TCCGGA 5 cut(s) 172, 184, 199, 812, 1021
LmnI GCTCC 2 cut(s) 279, 1031
Lsp1109I GCAGC 1 cut(s) 979
LweI GCATC 1 cut(s) 205
MabI ACCWGGT 1 cut(s) 883
MaeII ACGT 4 cut(s) 145, 262, 582, 723
MaeIII GTNAC 5 cut(s) 138, 458, 488, 662, 684
MbiI CCGCTC 1 cut(s) 1034
MboII GAAGA 4 cut(s) 80, 143, 759, 932
MflI RGATCY 6 cut(s) 70, 169, 181, 187, 809, 1018
MhlI GDGCHC 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 58
MluCI AATT 1 cut(s) 994
MluNI TGGCCA 1 cut(s) 58
MlyI GAGTC 6 cut(s) 460, 659, 661, 665, 700, 953
MmeI TCCRAC 2 cut(s) 59, 986
MnlI CCTC 8 cut(s) 60, 101, 336, 395, 653, 794, 837, 910
Mox20I TGGCCA 1 cut(s) 58
MroI TCCGGA 5 cut(s) 172, 184, 199, 812, 1021
MscI TGGCCA 1 cut(s) 58
MseI TTAA 3 cut(s) 30, 252, 753
Msp20I TGGCCA 1 cut(s) 58
MspA1I CMGCKG 1 cut(s) 970
MspR9I CCNGG 4 cut(s) 315, 452, 849, 885
MvaI CCWGG 2 cut(s) 849, 885
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 1 cut(s) 967
NciI CCSGG 2 cut(s) 315, 452
NcoI CCATGG 1 cut(s) 53
NlaIII CATG 6 cut(s) 57, 228, 287, 414, 428, 1003
NlaIV GGNNCC 6 cut(s) 171, 198, 281, 811, 846, 1020
NmuCI GTSAC 1 cut(s) 662
NspI RCATGY 2 cut(s) 228, 414
PcsI WCGNNNNNNNCGW 5 cut(s) 268, 626, 674, 680, 958
PfeI GAWTC 7 cut(s) 14, 176, 203, 572, 598, 742, 816
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 2 cut(s) 645, 969
PleI GAGTC 6 cut(s) 460, 659, 660, 665, 699, 952
PpsI GAGTC 6 cut(s) 460, 659, 660, 665, 699, 952
PpuMI RGGWCCY 1 cut(s) 845
Psp1406I AACGTT 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 845
Psp6I CCWGG 2 cut(s) 847, 883
PspGI CCWGG 2 cut(s) 847, 883
PspN4I GGNNCC 6 cut(s) 171, 198, 281, 811, 846, 1020
PspPI GGNCC 2 cut(s) 197, 845
PspPPI RGGWCCY 1 cut(s) 845
PsuI RGATCY 6 cut(s) 70, 169, 181, 187, 809, 1018
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 30, 252, 753
SatI GCNGC 2 cut(s) 644, 968
Sau96I GGNCC 2 cut(s) 197, 845
SchI GAGTC 6 cut(s) 460, 659, 661, 665, 700, 953
ScrFI CCNGG 4 cut(s) 315, 452, 849, 885
SduI GDGCHC 1 cut(s) 271
SexAI ACCWGGT 1 cut(s) 883
SfaNI GCATC 1 cut(s) 205
SgrAI CRCCGGYG 1 cut(s) 646
SinI GGWCC 2 cut(s) 197, 845
Sse9I AATT 1 cut(s) 994
SsiI CCGC 2 cut(s) 644, 1034
StyD4I CCNGG 4 cut(s) 313, 450, 847, 883
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 4 cut(s) 40, 79, 485, 494
TaiI ACGT 4 cut(s) 148, 265, 585, 726
TaqI TCGA 5 cut(s) 213, 579, 620, 942, 975
TasI AATT 1 cut(s) 994
TauI GCSGC 1 cut(s) 646
TfiI GAWTC 7 cut(s) 14, 176, 203, 572, 598, 742, 816
Tru1I TTAA 3 cut(s) 30, 252, 753
Tru9I TTAA 3 cut(s) 30, 252, 753
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 1 cut(s) 967
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 3 cut(s) 32, 341, 908
TspGWI ACGGA 7 cut(s) 108, 120, 144, 308, 618, 822, 845
VpaK11BI GGWCC 2 cut(s) 197, 845
XceI RCATGY 2 cut(s) 228, 414
ZraI GACGTC 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.