RLG00000010491

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003417
Physical Location & Seq
Reverse (-)
2069616 .. 2071123
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010491

Sequence Viewer

Length: 1038 bp
ATGATGCTCGGAGAACCGACCCGACTCTCTCCGACCCTCAAGGTCGCTCCGTGGGACCCATTCGACGACCCGACATCCGGTCTCGGGTCTCCGTTTTCCGTTCGCAGCCCGTCCGCCAATGCCGGCTTCCTTGACTCGCTCTCGGCGCTCCACCGGTTCCTGCCGTCGAACGAGTCGGACTCACTGAGCGACGACCCGGACATGCCTCTCATTTCCTGCGACCAGTTCCGGATGTTTGAGTTCAAGGTTCGGCGCTGCGCACGTGGAAGGTCACATGACTGGACCGAGTGCCCGTACGCCCACCCGGGCGAGAAGGCCCGCCGCCGCGACCCGAGGAAGTACCACTATTCGGGTTCGGCCTGCCCCGATTTCCGCAAGGGCAACTGCTCTAAGGGAGACTCCTGCGAGTTCGCTCACGGCGTTTTCGAGTGCTGGCTCCACCCGGCTCGCTACCGGACCCAGCCATGCAAGGACGGCCTGGCCTGTAACCGCCGGGTCTGCTTCTTCGCCCACACGCCCGAGCAGCTCCGGGTCTTGCCCGGCCACAGCCCGAGGACTCACGGGCCGGGTTTCTTCGATTCGCCCACTTCGCCTCCGATATCTCCGCCGTCGGATTCGCCGCCAATGTCGCCGAACAGTCCGCAACTCCGCCTCAACTCGGTGAGTGAACTCGTAGCGTCCATGCGCAACTTCAAGCTGGCCAAGATGCAAATGAGCACCACCCCTCCTTCGTGGGTGGGATCCGGGTTCGGATCTCCCCGCGGACCTCCGCTCCGACCCGATTTCTTTAGCCTCCCCAACACCCCGACTCGCACTTCGGGTCGGTCCGGACCCGGCCCGTTTGATCTGTGGGAGCACTCGCTGGTTGAAGAGCCGGCAATGGAGAGGGTGGAGTCGGGAAGGGACCTAAGGGCGAGAATGTACGCGAAGCTGAGTAAGGATAACTCGATGGGCCGAGTGGGCCGGGTTGACTCAGGCGGATTTTCGGGTCCTGATGTGGAGTGGGTATCGGAGTTAGTGAGCGAGGGCGAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006417 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0017148 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032870 GO:0034248 GO:0034249 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044464 GO:0045935 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

346

Amino Acids

38.19

Weight (kDa)

8.04

Isoelectric Point (pI)

65.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 76 - 108 3.2e-21 AtC3H23-like, CCCH zinc finger
zf-CCCH PF00642 119 - 140 5.8e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 121 - 139 6e-06 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 259, 686
AccBSI CCGCTC 1 cut(s) 772
AccII CGCG 3 cut(s) 327, 762, 926
AccIII TCCGGA 2 cut(s) 228, 827
AclWI GGATC 3 cut(s) 735, 748, 760
AcoI YGGCCR 2 cut(s) 541, 699
AcvI CACGTG 1 cut(s) 263
AfaI GTAC 3 cut(s) 296, 341, 923
AfiI CCNNNNNNNGG 4 cut(s) 77, 84, 349, 658
AgeI ACCGGT 1 cut(s) 153
AgsI TTSAA 3 cut(s) 244, 694, 869
AhdI GACNNNNNGTC 1 cut(s) 78
AjnI CCWGG 1 cut(s) 477
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 3 cut(s) 526, 697, 931
AluI AGCT 3 cut(s) 526, 697, 931
Alw21I GWGCWC 2 cut(s) 719, 858
Alw26I GTCTC 4 cut(s) 86, 93, 390, 1025
AlwI GGATC 3 cut(s) 735, 748, 760
Ama87I CYCGRG 5 cut(s) 83, 304, 331, 518, 550
Aor13HI TCCGGA 2 cut(s) 228, 827
ApeKI GCWGC 3 cut(s) 105, 255, 523
ArsI GACNNNNNNTTYG 2 cut(s) 799, 831
AsiGI ACCGGT 1 cut(s) 153
AspLEI GCGC 4 cut(s) 148, 255, 260, 687
AsuHPI GGTGA 1 cut(s) 673
AvaI CYCGRG 5 cut(s) 83, 304, 331, 518, 550
AvaII GGWCC 8 cut(s) 55, 282, 456, 764, 825, 830, 904, 989
AxyI CCTNAGG 1 cut(s) 908
BaeGI GKGCMC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 701
BamHI GGATCC 1 cut(s) 740
BbrPI CACGTG 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 719, 858
BbvI GCAGC 3 cut(s) 117, 242, 535
BccI CCATC 1 cut(s) 943
BceAI ACGGC 4 cut(s) 148, 433, 490, 592
BciT130I CCWGG 1 cut(s) 479
BcoDI GTCTC 4 cut(s) 86, 93, 390, 1025
BfoI RGCGCY 2 cut(s) 149, 256
BglI GCCNNNNNGGC 1 cut(s) 960
BisI GCNGC 6 cut(s) 106, 256, 322, 325, 524, 620
BlsI GCNGC 6 cut(s) 107, 257, 323, 326, 525, 621
Bme18I GGWCC 8 cut(s) 55, 282, 456, 764, 825, 830, 904, 989
BmeRI GACNNNNNGTC 1 cut(s) 78
BmeT110I CYCGRG 5 cut(s) 83, 304, 331, 518, 550
BmiI GGNNCC 9 cut(s) 56, 57, 158, 437, 458, 742, 832, 905, 990
BmsI GCATC 1 cut(s) 696
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 263
BsaI GGTCTC 3 cut(s) 86, 93, 1025
BsaJI CCNNGG 5 cut(s) 50, 304, 332, 551, 760
BsaWI WCCGGW 5 cut(s) 77, 153, 228, 453, 827
BsaXI ACNNNNNCTCC 6 cut(s) 577, 607, 709, 739, 756, 786
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 84, 349, 658
Bse118I RCCGGY 3 cut(s) 122, 153, 874
Bse1I ACTGG 2 cut(s) 223, 284
Bse21I CCTNAGG 1 cut(s) 908
Bse3DI GCAATG 1 cut(s) 885
BseAI TCCGGA 2 cut(s) 228, 827
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 5 cut(s) 50, 304, 332, 551, 760
BseGI GGATG 2 cut(s) 74, 237
BseLI CCNNNNNNNGG 4 cut(s) 77, 84, 349, 658
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 3 cut(s) 176, 923, 987
BseNI ACTGG 2 cut(s) 223, 284
BseSI GKGCMC 1 cut(s) 293
BseXI GCAGC 3 cut(s) 117, 242, 535
BseYI CCCAGC 1 cut(s) 459
Bsh1236I CGCG 3 cut(s) 327, 762, 926
BshTI ACCGGT 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 719, 858
BsiHKCI CYCGRG 5 cut(s) 83, 304, 331, 518, 550
BsiWI CGTACG 1 cut(s) 294
BslFI GGGAC 2 cut(s) 68, 917
BslI CCNNNNNNNGG 4 cut(s) 77, 84, 349, 658
BsmAI GTCTC 4 cut(s) 86, 93, 390, 1025
BsmFI GGGAC 2 cut(s) 68, 917
Bso31I GGTCTC 3 cut(s) 86, 93, 1025
BsoBI CYCGRG 5 cut(s) 83, 304, 331, 518, 550
Bsp1286I GDGCHC 3 cut(s) 293, 719, 858
Bsp13I TCCGGA 2 cut(s) 228, 827
Bsp143I GATC 3 cut(s) 740, 752, 844
BspCNI CTCAG 3 cut(s) 177, 924, 986
BspEI TCCGGA 2 cut(s) 228, 827
BspFNI CGCG 3 cut(s) 327, 762, 926
BspLI GGNNCC 9 cut(s) 56, 57, 158, 437, 458, 742, 832, 905, 990
BspPI GGATC 3 cut(s) 735, 748, 760
BspQI GCTCTTC 1 cut(s) 864
BspTNI GGTCTC 3 cut(s) 86, 93, 1025
BsrBI CCGCTC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 3 cut(s) 122, 153, 874
BsrI ACTGG 2 cut(s) 223, 284
BssAI RCCGGY 3 cut(s) 122, 153, 874
BssECI CCNNGG 5 cut(s) 50, 304, 332, 551, 760
BssMI GATC 3 cut(s) 740, 752, 844
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 1 cut(s) 864
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 7 cut(s) 124, 319, 361, 434, 448, 699, 876
BstDEI CTNAG 5 cut(s) 185, 390, 908, 932, 973
BstDSI CCRYGG 2 cut(s) 50, 760
BstF5I GGATG 2 cut(s) 74, 237
BstFNI CGCG 3 cut(s) 327, 762, 926
BstH2I RGCGCY 2 cut(s) 149, 256
BstHHI GCGC 4 cut(s) 148, 255, 260, 687
BstKTI GATC 3 cut(s) 743, 755, 847
BstMAI GTCTC 4 cut(s) 86, 93, 390, 1025
BstMBI GATC 3 cut(s) 740, 752, 844
BstMWI GCNNNNNNNGC 7 cut(s) 145, 474, 498, 523, 589, 628, 960
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 3 cut(s) 327, 762, 926
BstV1I GCAGC 3 cut(s) 117, 242, 535
BstX2I RGATCY 2 cut(s) 740, 752
BstYI RGATCY 2 cut(s) 740, 752
Bsu36I CCTNAGG 1 cut(s) 908
BtgI CCRYGG 2 cut(s) 50, 760
BtsCI GGATG 2 cut(s) 74, 237
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 7 cut(s) 124, 319, 361, 434, 448, 699, 876
CfoI GCGC 4 cut(s) 148, 255, 260, 687
Cfr10I RCCGGY 3 cut(s) 122, 153, 874
Cfr42I CCGCGG 1 cut(s) 763
Cfr9I CCCGGG 1 cut(s) 304
CpoI CGGWCCG 1 cut(s) 825
CseI GACGC 1 cut(s) 666
Csp6I GTAC 3 cut(s) 295, 340, 922
CspAI ACCGGT 1 cut(s) 153
CspI CGGWCCG 1 cut(s) 825
CviAII CATG 4 cut(s) 202, 275, 465, 682
CviQI GTAC 3 cut(s) 295, 340, 922
DdeI CTNAG 5 cut(s) 185, 390, 908, 932, 973
DpnI GATC 3 cut(s) 742, 754, 846
DpnII GATC 3 cut(s) 740, 752, 844
DriI GACNNNNNGTC 1 cut(s) 78
EaeI YGGCCR 2 cut(s) 541, 699
Eam1104I CTCTTC 1 cut(s) 864
Eam1105I GACNNNNNGTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 864
EciI GGCGGA 4 cut(s) 103, 594, 638, 993
Eco31I GGTCTC 3 cut(s) 86, 93, 1025
Eco32I GATATC 1 cut(s) 600
Eco47I GGWCC 8 cut(s) 55, 282, 456, 764, 825, 830, 904, 989
Eco72I CACGTG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 908
Eco88I CYCGRG 5 cut(s) 83, 304, 331, 518, 550
EcoO109I RGGNCCY 3 cut(s) 55, 904, 989
EcoRII CCWGG 1 cut(s) 477
EcoRV GATATC 1 cut(s) 600
FaeI CATG 4 cut(s) 205, 278, 468, 685
FaiI YATR 4 cut(s) 203, 276, 466, 683
FaqI GGGAC 2 cut(s) 68, 917
FatI CATG 4 cut(s) 201, 274, 464, 681
FauI CCCGC 2 cut(s) 326, 767
Fnu4HI GCNGC 6 cut(s) 106, 256, 322, 325, 524, 620
FokI GGATG 2 cut(s) 61, 244
Fsp4HI GCNGC 6 cut(s) 106, 256, 322, 325, 524, 620
FspI TGCGCA 2 cut(s) 259, 686
GlaI GCGC 4 cut(s) 147, 254, 259, 686
GluI GCNGC 6 cut(s) 106, 256, 322, 325, 524, 620
GsaI CCCAGC 1 cut(s) 463
HaeII RGCGCY 2 cut(s) 149, 256
HgaI GACGC 1 cut(s) 666
HhaI GCGC 4 cut(s) 148, 255, 260, 687
Hin1II CATG 4 cut(s) 205, 278, 468, 685
Hin6I GCGC 4 cut(s) 146, 253, 258, 685
HinP1I GCGC 4 cut(s) 146, 253, 258, 685
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HphI GGTGA 1 cut(s) 673
Hpy166II GTNNAC 2 cut(s) 668, 970
Hpy188I TCNGA 8 cut(s) 11, 33, 178, 597, 613, 752, 776, 1012
Hpy188III TCNNGA 4 cut(s) 229, 828, 897, 992
Hpy8I GTNNAC 2 cut(s) 668, 970
Hpy99I CGWCG 4 cut(s) 68, 169, 194, 613
HpyAV CCTTC 4 cut(s) 261, 307, 738, 894
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 468, 709
HpyF10VI GCNNNNNNNGC 7 cut(s) 145, 474, 498, 523, 589, 628, 960
HpyF3I CTNAG 5 cut(s) 185, 390, 908, 932, 973
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 4 cut(s) 205, 278, 468, 685
HspAI GCGC 4 cut(s) 146, 253, 258, 685
KflI GGGWCCC 1 cut(s) 55
Kpn2I TCCGGA 2 cut(s) 228, 827
KroI GCCGGC 2 cut(s) 122, 874
KroNI GCCGGC 2 cut(s) 124, 876
KspI CCGCGG 1 cut(s) 763
Kzo9I GATC 3 cut(s) 740, 752, 844
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 6 cut(s) 52, 153, 441, 531, 777, 853
Lsp1109I GCAGC 3 cut(s) 117, 242, 535
LweI GCATC 1 cut(s) 696
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 270, 485
MalI GATC 3 cut(s) 742, 754, 846
MbiI CCGCTC 1 cut(s) 772
MboI GATC 3 cut(s) 740, 752, 844
MboII GAAGA 3 cut(s) 496, 565, 881
MflI RGATCY 2 cut(s) 740, 752
MhlI GDGCHC 3 cut(s) 293, 719, 858
MlsI TGGCCA 1 cut(s) 701
MluNI TGGCCA 1 cut(s) 701
MlyI GAGTC 9 cut(s) 18, 128, 173, 182, 392, 550, 802, 902, 965
MmeI TCCRAC 4 cut(s) 56, 156, 591, 799
Mox20I TGGCCA 1 cut(s) 701
MroI TCCGGA 2 cut(s) 228, 827
MroNI GCCGGC 2 cut(s) 122, 874
MscI TGGCCA 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 762
MteI GCGCNGCGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 3 cut(s) 327, 762, 926
MwoI GCNNNNNNNGC 7 cut(s) 145, 474, 498, 523, 589, 628, 960
NaeI GCCGGC 2 cut(s) 124, 876
NdeII GATC 3 cut(s) 740, 752, 844
NgoMIV GCCGGC 2 cut(s) 122, 874
NlaIII CATG 4 cut(s) 205, 278, 468, 685
NlaIV GGNNCC 9 cut(s) 56, 57, 158, 437, 458, 742, 832, 905, 990
NmeAIII GCCGAG 2 cut(s) 122, 980
NmuCI GTSAC 1 cut(s) 270
NsbI TGCGCA 2 cut(s) 259, 686
NspI RCATGY 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 864
PcsI WCGNNNNNNNCGW 2 cut(s) 417, 423
PdiI GCCGGC 2 cut(s) 124, 876
PfeI GAWTC 2 cut(s) 578, 614
Pfl23II CGTACG 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 153
PkrI GCNGC 6 cut(s) 107, 257, 323, 326, 525, 621
PleI GAGTC 9 cut(s) 18, 128, 173, 181, 392, 550, 802, 901, 965
PmaCI CACGTG 1 cut(s) 263
PmlI CACGTG 1 cut(s) 263
PpsI GAGTC 9 cut(s) 18, 128, 173, 181, 392, 550, 802, 901, 965
Ppu21I YACGTR 1 cut(s) 263
PpuMI RGGWCCY 3 cut(s) 55, 904, 989
Psp5II RGGWCCY 3 cut(s) 55, 904, 989
Psp6I CCWGG 1 cut(s) 477
PspCI CACGTG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 1 cut(s) 477
PspLI CGTACG 1 cut(s) 294
PspN4I GGNNCC 9 cut(s) 56, 57, 158, 437, 458, 742, 832, 905, 990
PspPPI RGGWCCY 3 cut(s) 55, 904, 989
PsuI RGATCY 2 cut(s) 740, 752
RsaI GTAC 3 cut(s) 296, 341, 923
RsaNI GTAC 3 cut(s) 295, 340, 922
Rsr2I CGGWCCG 1 cut(s) 825
RsrII CGGWCCG 1 cut(s) 825
SacII CCGCGG 1 cut(s) 763
SapI GCTCTTC 1 cut(s) 864
SatI GCNGC 6 cut(s) 106, 256, 322, 325, 524, 620
Sau3AI GATC 3 cut(s) 740, 752, 844
SchI GAGTC 9 cut(s) 18, 128, 173, 182, 392, 550, 802, 902, 965
SduI GDGCHC 3 cut(s) 293, 719, 858
SfaNI GCATC 1 cut(s) 696
SfiI GGCCNNNNNGGCC 1 cut(s) 960
Sfr303I CCGCGG 1 cut(s) 763
SgrBI CCGCGG 1 cut(s) 763
SinI GGWCC 8 cut(s) 55, 282, 456, 764, 825, 830, 904, 989
SmaI CCCGGG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 638
TaiI ACGT 1 cut(s) 265
TaqI TCGA 5 cut(s) 63, 167, 426, 576, 947
TaqII GACCGA 2 cut(s) 299, 813
TauI GCSGC 3 cut(s) 324, 327, 622
TfiI GAWTC 2 cut(s) 578, 614
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 3 cut(s) 105, 255, 523
Tsp45I GTSAC 1 cut(s) 270
TspGWI ACGGA 3 cut(s) 39, 81, 88
TspMI CCCGGG 1 cut(s) 304
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 8 cut(s) 55, 282, 456, 764, 825, 830, 904, 989
XceI RCATGY 1 cut(s) 205
XmaI CCCGGG 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.