pycom08g06180

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
4742221 .. 4743482
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06180.2

Sequence Viewer

Length: 1158 bp
ATGATGCTCGGAGAACCGACCCGACTTCACCCCACTCTCCATGTTCCTCCCTGGGACTCACTTGACGATCACGTTATTCATACCCCCACATCGCCCTTCTCCATCCCCATTCACTCCGGTAACTCTAACGGCAATGCCTCCAACGGAGGAGACTACTCCCCGCTCTCCCCAATGTTCCTCGACTCGCTCGCCGCGCTCCACCGTTACCTCCCGTCTAATGAGTCTGACTCGCTGGCAGAGGACCCGGACATGCCCATGAACCCGATCTCCTGTGACCAGTTCCGGATGTTCGAGTTCAAGGTCCGGAGGTGCGCCCACGGCAGGTCGCACGACTGGACCGACTGTCCATACGCCCACCCGGGCGAGAAAGCCCGGCGTCGCGACCCGAGAAAGTACCACTACTCTGGTGCTGCATGCCCTGACTTCCGCAAGGGCCACTGCCCGAAGGGTGACTCGTGCGAGTTCGCTCACGGTGTTTTCGAGTGCTGGCTCCACCCGGCCCGGTACCGGACCCAGCCATGCAAGGACGGGTTGCGCTGCAACCGCCGGGTCTGCTTCTTTGCCCACACGCCCGAACAGCTCCGGGTCCTGCCCGGTCAGAGCCCGAGAACCCAAGGGTCGGGAGCTTTGGACTCGTATCCATTTGGTTCGTCCCCCACCTCGATCCTGATGTCCCCTCCATTATCTCCACCGTCTGAGTCGCCGCCAATGTCGCCAAACAGCCCTCAACTCGGCCGTAACTCGGTGAGCAAACTTGTTGCTTCGATGCGAAACTTCAAGCTTGCTAAGATGAAAATGAACTCTCCGCCTGCATGGGGGACCCAAATGGGATCCGGGTTCGGCTCTTCACCACGTGGGTCAGCGTTCCGGCCCGGTCTTTGCAGCCTTCCTTCGACCCCGACTCGCACAACGGGTCGGGTCGGACCAAACCCGGTTGATATCTGGGACCAGCCGTGCGAAGAGGAGCCGGCAATGGAGAGGGTGGAGTCTGGGAGGGACCTCCGAGCGAGAATGTACGCGAGGCTGAACGACGAGTCGTGGAAAACCCTGTCTGCTGGGTCGACTCGTTTGTCGTTTTTCCGTTTTGATTCATATTACTGGGCTGGTGCGGTAAAATTCGGTGGCCTTTTGATTCTTCAAACCTTTTGGTGTGAATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

42.87

Weight (kDa)

8.66

Isoelectric Point (pI)

61.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1069
Acc36I ACCTGC 1 cut(s) 312
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AccBSI CCGCTC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 1061
AccII CGCG 3 cut(s) 194, 381, 1019
AccIII TCCGGA 2 cut(s) 282, 303
AciI CCGC 7 cut(s) 161, 192, 427, 544, 704, 806, 1109
AclWI GGATC 3 cut(s) 658, 825, 838
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 1 cut(s) 1115
AcvI CACGTG 1 cut(s) 854
AcyI GRCGYC 1 cut(s) 376
AdeI CACNNNGTG 1 cut(s) 854
AfaI GTAC 3 cut(s) 395, 506, 1016
AfiI CCNNNNNNNGG 6 cut(s) 321, 507, 619, 731, 742, 815
AgsI TTSAA 3 cut(s) 298, 778, 1139
AhdI GACNNNNNGTC 1 cut(s) 342
AjnI CCWGG 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 3 cut(s) 580, 626, 781
AluI AGCT 3 cut(s) 580, 626, 781
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 3 cut(s) 658, 825, 838
Ama87I CYCGRG 3 cut(s) 358, 385, 604
Aor13HI TCCGGA 2 cut(s) 282, 303
AoxI GGCC 5 cut(s) 433, 498, 733, 869, 1123
ApeKI GCWGC 3 cut(s) 410, 537, 882
ApoI RAATTY 1 cut(s) 1115
Asp718I GGTACC 1 cut(s) 504
AspLEI GCGC 3 cut(s) 196, 314, 537
AsuHPI GGTGA 4 cut(s) 20, 461, 757, 840
AvaI CYCGRG 3 cut(s) 358, 385, 604
AvaII GGWCC 9 cut(s) 241, 301, 336, 510, 586, 819, 923, 946, 997
BamHI GGATCC 1 cut(s) 830
BanI GGYRCC 1 cut(s) 504
BanII GRGCYC 1 cut(s) 605
BauI CACGAG 1 cut(s) 454
BbrPI CACGTG 1 cut(s) 854
BbvI GCAGC 3 cut(s) 397, 524, 894
BccI CCATC 1 cut(s) 110
BceAI ACGGC 4 cut(s) 145, 334, 720, 937
BciT130I CCWGG 1 cut(s) 52
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 312
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 5 cut(s) 192, 411, 538, 704, 883
BlsI GCNGC 5 cut(s) 193, 412, 539, 705, 884
Bme18I GGWCC 9 cut(s) 241, 301, 336, 510, 586, 819, 923, 946, 997
BmeRI GACNNNNNGTC 1 cut(s) 342
BmeT110I CYCGRG 3 cut(s) 358, 385, 604
BmrI ACTGGG 1 cut(s) 1108
BmsI GCATC 1 cut(s) 756
BmuI ACTGGG 1 cut(s) 1108
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BsaAI YACGTR 1 cut(s) 854
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 5 cut(s) 50, 51, 316, 358, 613
BsaWI WCCGGW 4 cut(s) 116, 282, 303, 507
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 6 cut(s) 321, 507, 619, 731, 742, 815
Bse118I RCCGGY 1 cut(s) 967
Bse1I ACTGG 3 cut(s) 277, 338, 1103
Bse3DI GCAATG 2 cut(s) 139, 978
BseAI TCCGGA 2 cut(s) 282, 303
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 5 cut(s) 50, 51, 316, 358, 613
BseGI GGATG 2 cut(s) 102, 291
BseLI CCNNNNNNNGG 6 cut(s) 321, 507, 619, 731, 742, 815
BseMI GCAATG 2 cut(s) 139, 978
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 3 cut(s) 277, 338, 1103
BseRI GAGGAG 2 cut(s) 162, 977
BseX3I CGGCCG 1 cut(s) 733
BseXI GCAGC 3 cut(s) 397, 524, 894
BseYI CCCAGC 2 cut(s) 513, 1055
Bsh1236I CGCG 3 cut(s) 194, 381, 1019
Bsh1285I CGRYCG 1 cut(s) 736
BshFI GGCC 5 cut(s) 435, 500, 735, 871, 1125
BshNI GGYRCC 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 736
BsiHKCI CYCGRG 3 cut(s) 358, 385, 604
BslFI GGGAC 6 cut(s) 68, 637, 658, 832, 959, 1010
BslI CCNNNNNNNGG 6 cut(s) 321, 507, 619, 731, 742, 815
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 6 cut(s) 68, 637, 658, 832, 959, 1010
BsnI GGCC 5 cut(s) 435, 500, 735, 871, 1125
BsoBI CYCGRG 3 cut(s) 358, 385, 604
Bsp1286I GDGCHC 1 cut(s) 605
Bsp13I TCCGGA 2 cut(s) 282, 303
Bsp143I GATC 4 cut(s) 67, 264, 663, 830
Bsp68I TCGCGA 1 cut(s) 381
BspACI CCGC 7 cut(s) 161, 192, 427, 544, 704, 806, 1109
BspANI GGCC 5 cut(s) 435, 500, 735, 871, 1125
BspCNI CTCAG 1 cut(s) 688
BspEI TCCGGA 2 cut(s) 282, 303
BspFNI CGCG 3 cut(s) 194, 381, 1019
BspMI ACCTGC 1 cut(s) 312
BspPI GGATC 3 cut(s) 658, 825, 838
BspQI GCTCTTC 1 cut(s) 850
BspT107I GGYRCC 1 cut(s) 504
BsrBI CCGCTC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 139, 978
BsrFI RCCGGY 1 cut(s) 967
BsrI ACTGG 3 cut(s) 277, 338, 1103
BssAI RCCGGY 1 cut(s) 967
BssECI CCNNGG 5 cut(s) 50, 51, 316, 358, 613
BssMI GATC 4 cut(s) 67, 264, 663, 830
BssNI GRCGYC 1 cut(s) 376
BssSI CACGAG 1 cut(s) 454
BssT1I CCWWGG 1 cut(s) 613
Bst2BI CACGAG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 4 cut(s) 203, 344, 473, 693
Bst6I CTCTTC 2 cut(s) 850, 954
BstACI GRCGYC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 854
BstC8I GCNNGC 7 cut(s) 189, 234, 415, 488, 783, 810, 969
BstDEI CTNAG 2 cut(s) 696, 786
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 2 cut(s) 102, 291
BstFNI CGCG 3 cut(s) 194, 381, 1019
BstHHI GCGC 3 cut(s) 196, 314, 537
BstKTI GATC 4 cut(s) 70, 267, 666, 833
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 4 cut(s) 67, 264, 663, 830
BstMCI CGRYCG 1 cut(s) 736
BstMWI GCNNNNNNNGC 6 cut(s) 193, 318, 543, 552, 577, 712
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 2 cut(s) 253, 417
BstUI CGCG 3 cut(s) 194, 381, 1019
BstV1I GCAGC 3 cut(s) 397, 524, 894
BstX2I RGATCY 1 cut(s) 830
BstXI CCANNNNNNTGG 1 cut(s) 404
BstYI RGATCY 1 cut(s) 830
BstZI CGGCCG 1 cut(s) 733
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 5 cut(s) 435, 500, 735, 871, 1125
BtgI CCRYGG 1 cut(s) 316
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 102, 291
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
BtuMI TCGCGA 1 cut(s) 381
BveI ACCTGC 1 cut(s) 312
Cac8I GCNNGC 7 cut(s) 189, 234, 415, 488, 783, 810, 969
CfoI GCGC 3 cut(s) 196, 314, 537
Cfr10I RCCGGY 1 cut(s) 967
Cfr9I CCCGGG 1 cut(s) 358
CseI GACGC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 394, 505, 1015
CviAII CATG 6 cut(s) 41, 250, 256, 414, 519, 813
CviQI GTAC 3 cut(s) 394, 505, 1015
DdeI CTNAG 2 cut(s) 696, 786
DpnI GATC 4 cut(s) 69, 266, 665, 832
DpnII GATC 4 cut(s) 67, 264, 663, 830
DraIII CACNNNGTG 1 cut(s) 854
DrdI GACNNNNNNGTC 1 cut(s) 1069
DriI GACNNNNNGTC 1 cut(s) 342
DseDI GACNNNNNNGTC 1 cut(s) 1069
EaeI YGGCCR 1 cut(s) 733
EagI CGGCCG 1 cut(s) 733
Eam1104I CTCTTC 2 cut(s) 850, 954
Eam1105I GACNNNNNGTC 1 cut(s) 342
EarI CTCTTC 2 cut(s) 850, 954
EciI GGCGGA 1 cut(s) 795
EclXI CGGCCG 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 605
Eco32I GATATC 1 cut(s) 940
Eco47I GGWCC 9 cut(s) 241, 301, 336, 510, 586, 819, 923, 946, 997
Eco52I CGGCCG 1 cut(s) 733
Eco72I CACGTG 1 cut(s) 854
Eco88I CYCGRG 3 cut(s) 358, 385, 604
EcoO109I RGGNCCY 4 cut(s) 241, 586, 819, 997
EcoRII CCWGG 1 cut(s) 50
EcoRV GATATC 1 cut(s) 940
EcoT14I CCWWGG 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 605
ErhI CCWWGG 1 cut(s) 613
FaeI CATG 6 cut(s) 44, 253, 259, 417, 522, 816
FaiI YATR 9 cut(s) 42, 81, 251, 257, 349, 415, 520, 814, 1093
FaqI GGGAC 6 cut(s) 68, 637, 658, 832, 959, 1010
FatI CATG 6 cut(s) 40, 249, 255, 413, 518, 812
FauI CCCGC 1 cut(s) 168
FblI GTMKAC 1 cut(s) 1061
Fnu4HI GCNGC 5 cut(s) 192, 411, 538, 704, 883
FokI GGATG 2 cut(s) 89, 298
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 5 cut(s) 192, 411, 538, 704, 883
GlaI GCGC 3 cut(s) 195, 313, 536
GluI GCNGC 5 cut(s) 192, 411, 538, 704, 883
GsaI CCCAGC 2 cut(s) 517, 1059
HaeIII GGCC 5 cut(s) 435, 500, 735, 871, 1125
HgaI GACGC 1 cut(s) 365
HhaI GCGC 3 cut(s) 196, 314, 537
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 6 cut(s) 44, 253, 259, 417, 522, 816
Hin6I GCGC 3 cut(s) 194, 312, 535
HinP1I GCGC 3 cut(s) 194, 312, 535
HincII GTYRAC 1 cut(s) 1062
HindII GTYRAC 1 cut(s) 1062
HindIII AAGCTT 1 cut(s) 779
HphI GGTGA 4 cut(s) 20, 461, 757, 840
Hpy166II GTNNAC 1 cut(s) 1062
Hpy188I TCNGA 6 cut(s) 11, 226, 600, 697, 923, 1004
Hpy188III TCNNGA 5 cut(s) 283, 304, 380, 621, 667
Hpy8I GTNNAC 1 cut(s) 1062
Hpy99I CGWCG 2 cut(s) 381, 1034
HpyAV CCTTC 4 cut(s) 106, 439, 896, 900
HpyCH4III ACNGT 4 cut(s) 203, 344, 473, 693
HpyCH4IV ACGT 2 cut(s) 72, 853
HpyCH4V TGCA 5 cut(s) 413, 522, 540, 812, 882
HpyF10VI GCNNNNNNNGC 6 cut(s) 193, 318, 543, 552, 577, 712
HpyF3I CTNAG 2 cut(s) 696, 786
HpySE526I ACGT 2 cut(s) 72, 853
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 6 cut(s) 44, 253, 259, 417, 522, 816
HspAI GCGC 3 cut(s) 194, 312, 535
KflI GGGWCCC 1 cut(s) 819
Kpn2I TCCGGA 2 cut(s) 282, 303
KpnI GGTACC 1 cut(s) 508
KroI GCCGGC 1 cut(s) 967
KroNI GCCGGC 1 cut(s) 969
Kzo9I GATC 4 cut(s) 67, 264, 663, 830
LguI GCTCTTC 1 cut(s) 850
LmnI GCTCC 5 cut(s) 201, 495, 585, 623, 964
Lsp1109I GCAGC 3 cut(s) 397, 524, 894
LweI GCATC 1 cut(s) 756
MaeII ACGT 2 cut(s) 72, 853
MaeIII GTNAC 5 cut(s) 119, 203, 272, 449, 737
MalI GATC 4 cut(s) 69, 266, 665, 832
MbiI CCGCTC 1 cut(s) 163
MboI GATC 4 cut(s) 67, 264, 663, 830
MboII GAAGA 3 cut(s) 837, 971, 1127
MflI RGATCY 1 cut(s) 830
MhlI GDGCHC 1 cut(s) 605
MluCI AATT 1 cut(s) 1115
MmeI TCCRAC 2 cut(s) 165, 901
MroI TCCGGA 2 cut(s) 282, 303
MroNI GCCGGC 1 cut(s) 967
MslI CAYNNNNRTG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 3 cut(s) 194, 381, 1019
MwoI GCNNNNNNNGC 6 cut(s) 193, 318, 543, 552, 577, 712
NaeI GCCGGC 1 cut(s) 969
NdeII GATC 4 cut(s) 67, 264, 663, 830
NgoMIV GCCGGC 1 cut(s) 967
NlaIII CATG 6 cut(s) 44, 253, 259, 417, 522, 816
NmeAIII GCCGAG 1 cut(s) 711
NmuCI GTSAC 2 cut(s) 272, 449
NruI TCGCGA 1 cut(s) 381
NspI RCATGY 2 cut(s) 253, 417
PaeI GCATGC 1 cut(s) 417
PasI CCCWGGG 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 850
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 477
PdiI GCCGGC 1 cut(s) 969
PfeI GAWTC 2 cut(s) 1088, 1132
PkrI GCNGC 5 cut(s) 193, 412, 539, 705, 884
PmaCI CACGTG 1 cut(s) 854
PmlI CACGTG 1 cut(s) 854
Ppu21I YACGTR 1 cut(s) 854
PpuMI RGGWCCY 4 cut(s) 241, 586, 819, 997
Psp5II RGGWCCY 4 cut(s) 241, 586, 819, 997
Psp6I CCWGG 1 cut(s) 50
PspCI CACGTG 1 cut(s) 854
PspFI CCCAGC 2 cut(s) 513, 1055
PspGI CCWGG 1 cut(s) 50
PspPPI RGGWCCY 4 cut(s) 241, 586, 819, 997
PsuI RGATCY 1 cut(s) 830
RruI TCGCGA 1 cut(s) 381
RsaI GTAC 3 cut(s) 395, 506, 1016
RsaNI GTAC 3 cut(s) 394, 505, 1015
RseI CAYNNNNRTG 1 cut(s) 254
SalI GTCGAC 1 cut(s) 1060
SapI GCTCTTC 1 cut(s) 850
SatI GCNGC 5 cut(s) 192, 411, 538, 704, 883
Sau3AI GATC 4 cut(s) 67, 264, 663, 830
SduI GDGCHC 1 cut(s) 605
SfaNI GCATC 1 cut(s) 756
SinI GGWCC 9 cut(s) 241, 301, 336, 510, 586, 819, 923, 946, 997
SmaI CCCGGG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 254
SphI GCATGC 1 cut(s) 417
Sse9I AATT 1 cut(s) 1115
SsiI CCGC 7 cut(s) 161, 192, 427, 544, 704, 806, 1109
StyI CCWWGG 1 cut(s) 613
TaaI ACNGT 4 cut(s) 203, 344, 473, 693
TaiI ACGT 2 cut(s) 75, 856
TaqI TCGA 7 cut(s) 180, 291, 480, 662, 764, 893, 1061
TaqII GACCGA 1 cut(s) 353
TasI AATT 1 cut(s) 1115
TauI GCSGC 2 cut(s) 194, 706
TfiI GAWTC 2 cut(s) 1088, 1132
TscAI CASTG 1 cut(s) 443
TseFI GTSAC 2 cut(s) 272, 449
TseI GCWGC 3 cut(s) 410, 537, 882
Tsp45I GTSAC 2 cut(s) 272, 449
TspDTI ATGAA 5 cut(s) 68, 272, 806, 812, 1080
TspGWI ACGGA 2 cut(s) 159, 1070
TspMI CCCGGG 1 cut(s) 358
TspRI CASTG 1 cut(s) 443
VpaK11BI GGWCC 9 cut(s) 241, 301, 336, 510, 586, 819, 923, 946, 997
XapI RAATTY 1 cut(s) 1115
XceI RCATGY 2 cut(s) 253, 417
XmaI CCCGGG 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.