zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G19810 AT4G29190 |
| fragaria_vesca | FvH4_1g06640 FvH4_2g32360 |
| malus_domestica | MD02G1069500.v1.1 MD02G1304100.v1.1 MD08G1075000.v1.1 MD15G1062500.v1.1 MD15G1201300.v1.1 |
| prunus_persica | Prupe.1G416500_v2.0.a1 Prupe.7G216200_v2.0.a1 |
| pyrus_communis | pycom02g05500 pycom08g06180 pycom15g05920 pycom15g17880 |
| rosa_chinensis | RchiOBHm_Chr2g0092381 RchiOBHm_Chr6g0310331 |
| rosa_laevigata | RLG00000010491 RLG00000016304 |
| rosa_multiflora | Rmu_co8369329.1_g000001 Rmu_sc0001195.1_g000002 Rmu_sc0002348.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00149180 Rroxscaffold_7G00158660 |
| rosa_rugosa | Rorug02G0025600 Rorug06G0379100 |
| rosa_samantha | Rh2AG071400 Rh2BG071100 Rh2CG072500 Rh2DG069800 Rh6AG493300 Rh6BG502900 Rh6CG507900 Rh6DG494000 |
| rosa_wichuraiana | Rw2G006100 Rw6G042920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 300 |
| AccB1I | GGYRCC | 2 cut(s) | 363, 395 |
| AccI | GTMKAC | 1 cut(s) | 1050 |
| AccII | CGCG | 6 cut(s) | 302, 304, 369, 455, 843, 863 |
| AclWI | GGATC | 3 cut(s) | 646, 826, 993 |
| AcoI | YGGCCR | 1 cut(s) | 1042 |
| AcsI | RAATTY | 1 cut(s) | 410 |
| AcyI | GRCGYC | 2 cut(s) | 364, 396 |
| AfaI | GTAC | 3 cut(s) | 338, 383, 632 |
| AgsI | TTSAA | 1 cut(s) | 286 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 330, 900 |
| AjnI | CCWGG | 1 cut(s) | 346 |
| AleI | CACNNNNGTG | 1 cut(s) | 534 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 239, 271 |
| AluBI | AGCT | 4 cut(s) | 568, 769, 1067, 1093 |
| AluI | AGCT | 4 cut(s) | 568, 769, 1067, 1093 |
| Alw21I | GWGCWC | 1 cut(s) | 793 |
| Alw26I | GTCTC | 2 cut(s) | 132, 159 |
| AlwI | GGATC | 3 cut(s) | 646, 826, 993 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1070 |
| Ama87I | CYCGRG | 7 cut(s) | 373, 391, 581, 592, 898, 914, 1054 |
| AoxI | GGCC | 5 cut(s) | 357, 421, 486, 805, 1042 |
| ApaI | GGGCCC | 1 cut(s) | 809 |
| ApeKI | GCWGC | 2 cut(s) | 502, 525 |
| ApoI | RAATTY | 1 cut(s) | 410 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 849, 881 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 567 |
| AspLEI | GCGC | 8 cut(s) | 302, 304, 366, 398, 431, 457, 614, 853 |
| AsuC2I | CCSGG | 8 cut(s) | 233, 361, 485, 582, 583, 915, 916, 979 |
| AsuHPI | GGTGA | 3 cut(s) | 64, 633, 745 |
| AvaI | CYCGRG | 7 cut(s) | 373, 391, 581, 592, 898, 914, 1054 |
| AvaII | GGWCC | 7 cut(s) | 55, 289, 324, 574, 894, 911, 934 |
| BaeGI | GKGCMC | 1 cut(s) | 809 |
| BanI | GGYRCC | 2 cut(s) | 363, 395 |
| BanII | GRGCYC | 2 cut(s) | 593, 809 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 862, 894 |
| BauI | CACGAG | 1 cut(s) | 442 |
| Bbv12I | GWGCWC | 1 cut(s) | 793 |
| BbvI | GCAGC | 2 cut(s) | 512, 514 |
| BccI | CCATC | 2 cut(s) | 509, 1024 |
| BceAI | ACGGC | 4 cut(s) | 70, 475, 519, 664 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 7, 41 |
| BciT130I | CCWGG | 1 cut(s) | 348 |
| BcnI | CCSGG | 8 cut(s) | 233, 361, 485, 582, 583, 915, 916, 979 |
| BcoDI | GTCTC | 2 cut(s) | 132, 159 |
| BfaI | CTAG | 1 cut(s) | 1094 |
| BfoI | RGCGCY | 3 cut(s) | 367, 399, 615 |
| BfuAI | ACCTGC | 1 cut(s) | 300 |
| BisI | GCNGC | 6 cut(s) | 180, 367, 399, 503, 526, 665 |
| BlsI | GCNGC | 6 cut(s) | 181, 368, 400, 504, 527, 666 |
| Bme1390I | CCNGG | 9 cut(s) | 233, 348, 361, 485, 582, 583, 915, 916, 979 |
| Bme18I | GGWCC | 7 cut(s) | 55, 289, 324, 574, 894, 911, 934 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 330, 900 |
| BmeT110I | CYCGRG | 7 cut(s) | 373, 391, 581, 592, 898, 914, 1054 |
| BmrFI | CCNGG | 9 cut(s) | 233, 348, 361, 485, 582, 583, 915, 916, 979 |
| BmsI | GCATC | 1 cut(s) | 744 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 200, 232 |
| BpuMI | CCSGG | 8 cut(s) | 233, 361, 485, 582, 583, 915, 916, 979 |
| BsaHI | GRCGYC | 2 cut(s) | 364, 396 |
| BsaJI | CCNNGG | 6 cut(s) | 50, 346, 581, 897, 914, 915 |
| BsaWI | WCCGGW | 1 cut(s) | 495 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 239, 269 |
| Bse118I | RCCGGY | 2 cut(s) | 128, 955 |
| Bse1I | ACTGG | 2 cut(s) | 265, 326 |
| Bse3DI | GCAATG | 3 cut(s) | 130, 424, 966 |
| BseBI | CCWGG | 1 cut(s) | 348 |
| BseDI | CCNNGG | 6 cut(s) | 50, 346, 581, 897, 914, 915 |
| BseGI | GGATG | 1 cut(s) | 520 |
| BseMI | GCAATG | 3 cut(s) | 130, 424, 966 |
| BseMII | CTCAG | 1 cut(s) | 1004 |
| BseNI | ACTGG | 2 cut(s) | 265, 326 |
| BsePI | GCGCGC | 1 cut(s) | 300 |
| BseSI | GKGCMC | 1 cut(s) | 809 |
| BseX3I | CGGCCG | 1 cut(s) | 1042 |
| BseXI | GCAGC | 2 cut(s) | 512, 514 |
| BseYI | CCCAGC | 2 cut(s) | 520, 1080 |
| BsgI | GTGCAG | 1 cut(s) | 11 |
| Bsh1236I | CGCG | 6 cut(s) | 302, 304, 369, 455, 843, 863 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1045 |
| BshFI | GGCC | 5 cut(s) | 359, 423, 488, 807, 1044 |
| BshNI | GGYRCC | 2 cut(s) | 363, 395 |
| BsiEI | CGRYCG | 1 cut(s) | 1045 |
| BsiHKAI | GWGCWC | 1 cut(s) | 793 |
| BsiHKCI | CYCGRG | 7 cut(s) | 373, 391, 581, 592, 898, 914, 1054 |
| BsiWI | CGTACG | 2 cut(s) | 336, 630 |
| BslFI | GGGAC | 3 cut(s) | 29, 68, 947 |
| BsmAI | GTCTC | 2 cut(s) | 132, 159 |
| BsmFI | GGGAC | 3 cut(s) | 29, 68, 947 |
| BsnI | GGCC | 5 cut(s) | 359, 423, 488, 807, 1044 |
| BsoBI | CYCGRG | 7 cut(s) | 373, 391, 581, 592, 898, 914, 1054 |
| Bsp120I | GGGCCC | 1 cut(s) | 805 |
| Bsp1286I | GDGCHC | 3 cut(s) | 593, 793, 809 |
| Bsp143I | GATC | 5 cut(s) | 67, 252, 651, 818, 985 |
| BspANI | GGCC | 5 cut(s) | 359, 423, 488, 807, 1044 |
| BspCNI | CTCAG | 1 cut(s) | 1005 |
| BspFNI | CGCG | 6 cut(s) | 302, 304, 369, 455, 843, 863 |
| BspMI | ACCTGC | 1 cut(s) | 300 |
| BspPI | GGATC | 3 cut(s) | 646, 826, 993 |
| BspQI | GCTCTTC | 1 cut(s) | 945 |
| BspT107I | GGYRCC | 2 cut(s) | 363, 395 |
| BsrDI | GCAATG | 3 cut(s) | 130, 424, 966 |
| BsrFI | RCCGGY | 2 cut(s) | 128, 955 |
| BsrI | ACTGG | 2 cut(s) | 265, 326 |
| BssAI | RCCGGY | 2 cut(s) | 128, 955 |
| BssECI | CCNNGG | 6 cut(s) | 50, 346, 581, 897, 914, 915 |
| BssHII | GCGCGC | 1 cut(s) | 300 |
| BssMI | GATC | 5 cut(s) | 67, 252, 651, 818, 985 |
| BssNI | GRCGYC | 2 cut(s) | 364, 396 |
| BssSI | CACGAG | 1 cut(s) | 442 |
| Bst2BI | CACGAG | 1 cut(s) | 442 |
| Bst2UI | CCWGG | 1 cut(s) | 348 |
| Bst4CI | ACNGT | 3 cut(s) | 153, 191, 635 |
| Bst6I | CTCTTC | 1 cut(s) | 945 |
| BstACI | GRCGYC | 2 cut(s) | 364, 396 |
| BstC8I | GCNNGC | 7 cut(s) | 130, 177, 302, 403, 771, 798, 957 |
| BstDEI | CTNAG | 2 cut(s) | 774, 1013 |
| BstDSI | CCRYGG | 1 cut(s) | 50 |
| BstF5I | GGATG | 1 cut(s) | 520 |
| BstFNI | CGCG | 6 cut(s) | 302, 304, 369, 455, 843, 863 |
| BstH2I | RGCGCY | 3 cut(s) | 367, 399, 615 |
| BstHHI | GCGC | 8 cut(s) | 302, 304, 366, 398, 431, 457, 614, 853 |
| BstKTI | GATC | 5 cut(s) | 70, 255, 654, 821, 988 |
| BstMAI | GTCTC | 2 cut(s) | 132, 159 |
| BstMBI | GATC | 5 cut(s) | 67, 252, 651, 818, 985 |
| BstMCI | CGRYCG | 1 cut(s) | 1045 |
| BstNI | CCWGG | 1 cut(s) | 348 |
| BstNSI | RCATGY | 3 cut(s) | 241, 277, 1063 |
| BstSCI | CCNGG | 9 cut(s) | 231, 346, 359, 483, 580, 581, 913, 914, 977 |
| BstSLI | GKGCMC | 1 cut(s) | 809 |
| BstUI | CGCG | 6 cut(s) | 302, 304, 369, 455, 843, 863 |
| BstV1I | GCAGC | 2 cut(s) | 512, 514 |
| BstX2I | RGATCY | 2 cut(s) | 818, 985 |
| BstYI | RGATCY | 2 cut(s) | 818, 985 |
| BstZI | CGGCCG | 1 cut(s) | 1042 |
| BsuRI | GGCC | 5 cut(s) | 359, 423, 488, 807, 1044 |
| BtgI | CCRYGG | 1 cut(s) | 50 |
| BtgZI | GCGATG | 1 cut(s) | 240 |
| BtsCI | GGATG | 1 cut(s) | 520 |
| BtsIMutI | CAGTG | 1 cut(s) | 149 |
| BveI | ACCTGC | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 7 cut(s) | 130, 177, 302, 403, 771, 798, 957 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1070 |
| CfoI | GCGC | 8 cut(s) | 302, 304, 366, 398, 431, 457, 614, 853 |
| Cfr10I | RCCGGY | 2 cut(s) | 128, 955 |
| Cfr9I | CCCGGG | 2 cut(s) | 581, 914 |
| CseI | GACGC | 1 cut(s) | 508 |
| Csp6I | GTAC | 3 cut(s) | 337, 382, 631 |
| CviAII | CATG | 7 cut(s) | 238, 244, 274, 317, 507, 801, 1060 |
| CviQI | GTAC | 3 cut(s) | 337, 382, 631 |
| DdeI | CTNAG | 2 cut(s) | 774, 1013 |
| DinI | GGCGCC | 2 cut(s) | 365, 397 |
| DpnI | GATC | 5 cut(s) | 69, 254, 653, 820, 987 |
| DpnII | GATC | 5 cut(s) | 67, 252, 651, 818, 985 |
| DriI | GACNNNNNGTC | 2 cut(s) | 330, 900 |
| EaeI | YGGCCR | 1 cut(s) | 1042 |
| EagI | CGGCCG | 1 cut(s) | 1042 |
| Eam1104I | CTCTTC | 1 cut(s) | 945 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 330, 900 |
| EarI | CTCTTC | 1 cut(s) | 945 |
| EciI | GGCGGA | 3 cut(s) | 82, 666, 783 |
| EclXI | CGGCCG | 1 cut(s) | 1042 |
| Eco24I | GRGCYC | 2 cut(s) | 593, 809 |
| Eco32I | GATATC | 2 cut(s) | 660, 672 |
| Eco47I | GGWCC | 7 cut(s) | 55, 289, 324, 574, 894, 911, 934 |
| Eco52I | CGGCCG | 1 cut(s) | 1042 |
| Eco88I | CYCGRG | 7 cut(s) | 373, 391, 581, 592, 898, 914, 1054 |
| EcoO109I | RGGNCCY | 3 cut(s) | 55, 574, 805 |
| EcoRI | GAATTC | 1 cut(s) | 410 |
| EcoRII | CCWGG | 1 cut(s) | 346 |
| EcoRV | GATATC | 2 cut(s) | 660, 672 |
| EcoT38I | GRGCYC | 2 cut(s) | 593, 809 |
| EgeI | GGCGCC | 2 cut(s) | 365, 397 |
| EheI | GGCGCC | 2 cut(s) | 365, 397 |
| FaeI | CATG | 7 cut(s) | 241, 247, 277, 320, 510, 804, 1063 |
| FaiI | YATR | 8 cut(s) | 239, 245, 275, 318, 508, 802, 1005, 1061 |
| FaqI | GGGAC | 3 cut(s) | 29, 68, 947 |
| FatI | CATG | 7 cut(s) | 237, 243, 273, 316, 506, 800, 1059 |
| FauI | CCCGC | 2 cut(s) | 836, 868 |
| FblI | GTMKAC | 1 cut(s) | 1050 |
| Fnu4HI | GCNGC | 6 cut(s) | 180, 367, 399, 503, 526, 665 |
| FokI | GGATG | 1 cut(s) | 527 |
| FriOI | GRGCYC | 2 cut(s) | 593, 809 |
| Fsp4HI | GCNGC | 6 cut(s) | 180, 367, 399, 503, 526, 665 |
| FspBI | CTAG | 1 cut(s) | 1094 |
| GlaI | GCGC | 8 cut(s) | 301, 303, 365, 397, 430, 456, 613, 852 |
| GluI | GCNGC | 6 cut(s) | 180, 367, 399, 503, 526, 665 |
| GsaI | CCCAGC | 2 cut(s) | 524, 1084 |
| HaeII | RGCGCY | 3 cut(s) | 367, 399, 615 |
| HaeIII | GGCC | 5 cut(s) | 359, 423, 488, 807, 1044 |
| HgaI | GACGC | 1 cut(s) | 508 |
| HhaI | GCGC | 8 cut(s) | 302, 304, 366, 398, 431, 457, 614, 853 |
| Hin1I | GRCGYC | 2 cut(s) | 364, 396 |
| Hin1II | CATG | 7 cut(s) | 241, 247, 277, 320, 510, 804, 1063 |
| Hin6I | GCGC | 8 cut(s) | 300, 302, 364, 396, 429, 455, 612, 851 |
| HinP1I | GCGC | 8 cut(s) | 300, 302, 364, 396, 429, 455, 612, 851 |
| HincII | GTYRAC | 2 cut(s) | 112, 1051 |
| HindII | GTYRAC | 2 cut(s) | 112, 1051 |
| HindIII | AAGCTT | 1 cut(s) | 767 |
| HphI | GGTGA | 3 cut(s) | 64, 633, 745 |
| Hpy166II | GTNNAC | 4 cut(s) | 112, 118, 740, 1051 |
| Hpy188I | TCNGA | 8 cut(s) | 159, 214, 685, 857, 888, 894, 992, 1090 |
| Hpy188III | TCNNGA | 3 cut(s) | 167, 655, 1070 |
| Hpy8I | GTNNAC | 4 cut(s) | 112, 118, 740, 1051 |
| Hpy99I | CGWCG | 3 cut(s) | 68, 85, 749 |
| HpyAV | CCTTC | 4 cut(s) | 206, 349, 884, 888 |
| HpyCH4III | ACNGT | 3 cut(s) | 153, 191, 635 |
| HpyCH4IV | ACGT | 2 cut(s) | 80, 114 |
| HpyCH4V | TGCA | 3 cut(s) | 28, 510, 800 |
| HpyF3I | CTNAG | 2 cut(s) | 774, 1013 |
| HpySE526I | ACGT | 2 cut(s) | 80, 114 |
| Hsp92I | GRCGYC | 2 cut(s) | 364, 396 |
| Hsp92II | CATG | 7 cut(s) | 241, 247, 277, 320, 510, 804, 1063 |
| HspAI | GCGC | 8 cut(s) | 300, 302, 364, 396, 429, 455, 612, 851 |
| KasI | GGCGCC | 2 cut(s) | 363, 395 |
| KflI | GGGWCCC | 1 cut(s) | 55 |
| KroI | GCCGGC | 2 cut(s) | 128, 955 |
| KroNI | GCCGGC | 2 cut(s) | 130, 957 |
| Kzo9I | GATC | 5 cut(s) | 67, 252, 651, 818, 985 |
| LguI | GCTCTTC | 1 cut(s) | 945 |
| LmnI | GCTCC | 5 cut(s) | 483, 796, 858, 1072, 1090 |
| Lsp1109I | GCAGC | 2 cut(s) | 512, 514 |
| LweI | GCATC | 1 cut(s) | 744 |
| MaeI | CTAG | 1 cut(s) | 1094 |
| MaeII | ACGT | 2 cut(s) | 80, 114 |
| MaeIII | GTNAC | 5 cut(s) | 191, 312, 491, 639, 725 |
| MalI | GATC | 5 cut(s) | 69, 254, 653, 820, 987 |
| MboI | GATC | 5 cut(s) | 67, 252, 651, 818, 985 |
| MboII | GAAGA | 2 cut(s) | 825, 962 |
| MflI | RGATCY | 2 cut(s) | 818, 985 |
| MhlI | GDGCHC | 3 cut(s) | 593, 793, 809 |
| MluCI | AATT | 1 cut(s) | 410 |
| Mly113I | GGCGCC | 2 cut(s) | 364, 396 |
| MmeI | TCCRAC | 2 cut(s) | 880, 911 |
| MroNI | GCCGGC | 2 cut(s) | 128, 955 |
| MroXI | GAANNNNTTC | 1 cut(s) | 567 |
| MseI | TTAA | 1 cut(s) | 765 |
| MslI | CAYNNNNRTG | 2 cut(s) | 242, 534 |
| MspR9I | CCNGG | 9 cut(s) | 233, 348, 361, 485, 582, 583, 915, 916, 979 |
| MvaI | CCWGG | 1 cut(s) | 348 |
| MvnI | CGCG | 6 cut(s) | 302, 304, 369, 455, 843, 863 |
| NaeI | GCCGGC | 2 cut(s) | 130, 957 |
| NarI | GGCGCC | 2 cut(s) | 364, 396 |
| NciI | CCSGG | 8 cut(s) | 233, 361, 485, 582, 583, 915, 916, 979 |
| NdeII | GATC | 5 cut(s) | 67, 252, 651, 818, 985 |
| NgoMIV | GCCGGC | 2 cut(s) | 128, 955 |
| NlaIII | CATG | 7 cut(s) | 241, 247, 277, 320, 510, 804, 1063 |
| NmeAIII | GCCGAG | 3 cut(s) | 201, 699, 1070 |
| NmuCI | GTSAC | 2 cut(s) | 312, 639 |
| NspI | RCATGY | 3 cut(s) | 241, 277, 1063 |
| OliI | CACNNNNGTG | 1 cut(s) | 534 |
| PauI | GCGCGC | 1 cut(s) | 300 |
| PciSI | GCTCTTC | 1 cut(s) | 945 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 459, 465, 635, 1047 |
| PdiI | GCCGGC | 2 cut(s) | 130, 957 |
| PdmI | GAANNNNTTC | 1 cut(s) | 567 |
| Pfl23II | CGTACG | 2 cut(s) | 336, 630 |
| PfoI | TCCNGGA | 1 cut(s) | 977 |
| PkrI | GCNGC | 6 cut(s) | 181, 368, 400, 504, 527, 666 |
| PluTI | GGCGCC | 2 cut(s) | 367, 399 |
| PpuMI | RGGWCCY | 2 cut(s) | 55, 574 |
| Psp5II | RGGWCCY | 2 cut(s) | 55, 574 |
| Psp6I | CCWGG | 1 cut(s) | 346 |
| PspFI | CCCAGC | 2 cut(s) | 520, 1080 |
| PspGI | CCWGG | 1 cut(s) | 346 |
| PspLI | CGTACG | 2 cut(s) | 336, 630 |
| PspOMI | GGGCCC | 1 cut(s) | 805 |
| PspPPI | RGGWCCY | 2 cut(s) | 55, 574 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1070 |
| PsuI | RGATCY | 2 cut(s) | 818, 985 |
| PteI | GCGCGC | 1 cut(s) | 300 |
| RsaI | GTAC | 3 cut(s) | 338, 383, 632 |
| RsaNI | GTAC | 3 cut(s) | 337, 382, 631 |
| RseI | CAYNNNNRTG | 2 cut(s) | 242, 534 |
| SalI | GTCGAC | 1 cut(s) | 1049 |
| SapI | GCTCTTC | 1 cut(s) | 945 |
| SaqAI | TTAA | 1 cut(s) | 765 |
| SatI | GCNGC | 6 cut(s) | 180, 367, 399, 503, 526, 665 |
| Sau3AI | GATC | 5 cut(s) | 67, 252, 651, 818, 985 |
| ScrFI | CCNGG | 9 cut(s) | 233, 348, 361, 485, 582, 583, 915, 916, 979 |
| SduI | GDGCHC | 3 cut(s) | 593, 793, 809 |
| SfaNI | GCATC | 1 cut(s) | 744 |
| SfoI | GGCGCC | 2 cut(s) | 365, 397 |
| SinI | GGWCC | 7 cut(s) | 55, 289, 324, 574, 894, 911, 934 |
| SmaI | CCCGGG | 2 cut(s) | 583, 916 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 242, 534 |
| SrfI | GCCCGGGC | 1 cut(s) | 583 |
| Sse9I | AATT | 1 cut(s) | 410 |
| SspDI | GGCGCC | 2 cut(s) | 363, 395 |
| SspMI | CTAG | 1 cut(s) | 1094 |
| StyD4I | CCNGG | 9 cut(s) | 231, 346, 359, 483, 580, 581, 913, 914, 977 |
| TaaI | ACNGT | 3 cut(s) | 153, 191, 635 |
| TaiI | ACGT | 2 cut(s) | 83, 117 |
| TaqII | GACCGA | 1 cut(s) | 341 |
| TasI | AATT | 1 cut(s) | 410 |
| TauI | GCSGC | 4 cut(s) | 182, 369, 401, 667 |
| Tru1I | TTAA | 1 cut(s) | 765 |
| Tru9I | TTAA | 1 cut(s) | 765 |
| TscAI | CASTG | 1 cut(s) | 156 |
| TseFI | GTSAC | 2 cut(s) | 312, 639 |
| TseI | GCWGC | 2 cut(s) | 502, 525 |
| Tsp45I | GTSAC | 2 cut(s) | 312, 639 |
| TspDTI | ATGAA | 2 cut(s) | 260, 794 |
| TspGWI | ACGGA | 5 cut(s) | 39, 97, 150, 189, 324 |
| TspMI | CCCGGG | 2 cut(s) | 581, 914 |
| TspRI | CASTG | 1 cut(s) | 156 |
| VpaK11BI | GGWCC | 7 cut(s) | 55, 289, 324, 574, 894, 911, 934 |
| XapI | RAATTY | 1 cut(s) | 410 |
| XceI | RCATGY | 3 cut(s) | 241, 277, 1063 |
| XmaI | CCCGGG | 2 cut(s) | 581, 914 |
| XmiI | GTMKAC | 1 cut(s) | 1050 |
| XmnI | GAANNNNTTC | 1 cut(s) | 567 |
| XspI | CTAG | 1 cut(s) | 1094 |