Prupe.1G416500_v2.0.a1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
36156265 .. 36157816
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G416500.1

Sequence Viewer

Length: 1107 bp
ATGATGTTAGGAGAACCGACCCGACTGCACCCGACCCTCCAAGTCCCTCCGTGGGACCCATTCGACGATCTCACCCCAACGTCGCCGTTCTCCGCCCCAAATCCCTCCGTCAACGTAAACAGCAATGCCGGCAACGGAGACTACTCTCCACTGTCTCCGATGTTTCTCGACTCGCTCGCCGCACTCCACCGTTACCTTCCGTCAAACGAGTCTGACTCGCTCGGCGATGACCCGGACATGCCCATGAACCCGATCTCCTGCGACCAGTTCCGCATGTTCGAGTTCAAGGTCCGGCGGTGCGCGCGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCAGGCGAGAAGGCCCGGCGCCGCGACCCGAGAAAGTACCACTACTCGGGCGCCGCCTGCCCCGAATTCCGCAAGGGCCATTGCGCCAAAGGCGACTCGTGCGAGTTCGCGCACGGCGTTTTCGAGTGTTGGCTCCACCCGGCCCGTTACCGGACGCAGCCATGCAAGGATGGGCTGGGCTGCCACCGCCGTGTCTGCTTCTTTGCTCACACGCCCGAACAGCTTCGGGTCCTGCCCGGGCAGAGCCCGAGAACTCACGGGTCGGGCGCTTTCGACTCGTATTCGTACGGTTCGTCACCCACCTCGATCCTGATATCGCCGCCGATATCTCCGCCGTCTGACTCGCCACCAATGTCGCCCAACAGCCCTCAACTCGGCTGTAACTCGGTGAGTGAACTCGTCGCTTCGATGCGGAACTTTAAGCTTGCTAAGATGAAAATGAGTGCTCCGCCTGCATGGGGCCCACAAATGGGATCTGGGTTTGGTTCTTCTCCACGCGGGTCTGCGCTCCGACCCGCGTTTTGTAGCCTTCCTTCGACTCCGACTCGGACCTCGGGTCGGGCTGGACCCGGGGCGGTTGATATTTGGGACCACCCTTGCGAGGAAGAGCCGGCAATGGAGAGGGTGGAGTCCGGGAGGGATCTCCGAGCGAGAATGTATGCGAGGCTGAGTAAGGAAAACTCGATGGGCAGAGTCGGCCGAGTCGACTCGGGCATGTCAGCTCCTGATGTGGGCTGGGTTTCGGAGCTAGTGAGTGAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

369

Amino Acids

40.34

Weight (kDa)

7.57

Isoelectric Point (pI)

67.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AccB1I GGYRCC 2 cut(s) 363, 395
AccI GTMKAC 1 cut(s) 1050
AccII CGCG 6 cut(s) 302, 304, 369, 455, 843, 863
AclWI GGATC 3 cut(s) 646, 826, 993
AcoI YGGCCR 1 cut(s) 1042
AcsI RAATTY 1 cut(s) 410
AcyI GRCGYC 2 cut(s) 364, 396
AfaI GTAC 3 cut(s) 338, 383, 632
AgsI TTSAA 1 cut(s) 286
AhdI GACNNNNNGTC 2 cut(s) 330, 900
AjnI CCWGG 1 cut(s) 346
AleI CACNNNNGTG 1 cut(s) 534
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 4 cut(s) 568, 769, 1067, 1093
AluI AGCT 4 cut(s) 568, 769, 1067, 1093
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 2 cut(s) 132, 159
AlwI GGATC 3 cut(s) 646, 826, 993
AlwNI CAGNNNCTG 1 cut(s) 1070
Ama87I CYCGRG 7 cut(s) 373, 391, 581, 592, 898, 914, 1054
AoxI GGCC 5 cut(s) 357, 421, 486, 805, 1042
ApaI GGGCCC 1 cut(s) 809
ApeKI GCWGC 2 cut(s) 502, 525
ApoI RAATTY 1 cut(s) 410
ArsI GACNNNNNNTTYG 2 cut(s) 849, 881
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 8 cut(s) 302, 304, 366, 398, 431, 457, 614, 853
AsuC2I CCSGG 8 cut(s) 233, 361, 485, 582, 583, 915, 916, 979
AsuHPI GGTGA 3 cut(s) 64, 633, 745
AvaI CYCGRG 7 cut(s) 373, 391, 581, 592, 898, 914, 1054
AvaII GGWCC 7 cut(s) 55, 289, 324, 574, 894, 911, 934
BaeGI GKGCMC 1 cut(s) 809
BanI GGYRCC 2 cut(s) 363, 395
BanII GRGCYC 2 cut(s) 593, 809
BarI GAAGNNNNNNTAC 2 cut(s) 862, 894
BauI CACGAG 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 2 cut(s) 512, 514
BccI CCATC 2 cut(s) 509, 1024
BceAI ACGGC 4 cut(s) 70, 475, 519, 664
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 348
BcnI CCSGG 8 cut(s) 233, 361, 485, 582, 583, 915, 916, 979
BcoDI GTCTC 2 cut(s) 132, 159
BfaI CTAG 1 cut(s) 1094
BfoI RGCGCY 3 cut(s) 367, 399, 615
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 6 cut(s) 180, 367, 399, 503, 526, 665
BlsI GCNGC 6 cut(s) 181, 368, 400, 504, 527, 666
Bme1390I CCNGG 9 cut(s) 233, 348, 361, 485, 582, 583, 915, 916, 979
Bme18I GGWCC 7 cut(s) 55, 289, 324, 574, 894, 911, 934
BmeRI GACNNNNNGTC 2 cut(s) 330, 900
BmeT110I CYCGRG 7 cut(s) 373, 391, 581, 592, 898, 914, 1054
BmrFI CCNGG 9 cut(s) 233, 348, 361, 485, 582, 583, 915, 916, 979
BmsI GCATC 1 cut(s) 744
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpuMI CCSGG 8 cut(s) 233, 361, 485, 582, 583, 915, 916, 979
BsaHI GRCGYC 2 cut(s) 364, 396
BsaJI CCNNGG 6 cut(s) 50, 346, 581, 897, 914, 915
BsaWI WCCGGW 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse118I RCCGGY 2 cut(s) 128, 955
Bse1I ACTGG 2 cut(s) 265, 326
Bse3DI GCAATG 3 cut(s) 130, 424, 966
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 6 cut(s) 50, 346, 581, 897, 914, 915
BseGI GGATG 1 cut(s) 520
BseMI GCAATG 3 cut(s) 130, 424, 966
BseMII CTCAG 1 cut(s) 1004
BseNI ACTGG 2 cut(s) 265, 326
BsePI GCGCGC 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 809
BseX3I CGGCCG 1 cut(s) 1042
BseXI GCAGC 2 cut(s) 512, 514
BseYI CCCAGC 2 cut(s) 520, 1080
BsgI GTGCAG 1 cut(s) 11
Bsh1236I CGCG 6 cut(s) 302, 304, 369, 455, 843, 863
Bsh1285I CGRYCG 1 cut(s) 1045
BshFI GGCC 5 cut(s) 359, 423, 488, 807, 1044
BshNI GGYRCC 2 cut(s) 363, 395
BsiEI CGRYCG 1 cut(s) 1045
BsiHKAI GWGCWC 1 cut(s) 793
BsiHKCI CYCGRG 7 cut(s) 373, 391, 581, 592, 898, 914, 1054
BsiWI CGTACG 2 cut(s) 336, 630
BslFI GGGAC 3 cut(s) 29, 68, 947
BsmAI GTCTC 2 cut(s) 132, 159
BsmFI GGGAC 3 cut(s) 29, 68, 947
BsnI GGCC 5 cut(s) 359, 423, 488, 807, 1044
BsoBI CYCGRG 7 cut(s) 373, 391, 581, 592, 898, 914, 1054
Bsp120I GGGCCC 1 cut(s) 805
Bsp1286I GDGCHC 3 cut(s) 593, 793, 809
Bsp143I GATC 5 cut(s) 67, 252, 651, 818, 985
BspANI GGCC 5 cut(s) 359, 423, 488, 807, 1044
BspCNI CTCAG 1 cut(s) 1005
BspFNI CGCG 6 cut(s) 302, 304, 369, 455, 843, 863
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 3 cut(s) 646, 826, 993
BspQI GCTCTTC 1 cut(s) 945
BspT107I GGYRCC 2 cut(s) 363, 395
BsrDI GCAATG 3 cut(s) 130, 424, 966
BsrFI RCCGGY 2 cut(s) 128, 955
BsrI ACTGG 2 cut(s) 265, 326
BssAI RCCGGY 2 cut(s) 128, 955
BssECI CCNNGG 6 cut(s) 50, 346, 581, 897, 914, 915
BssHII GCGCGC 1 cut(s) 300
BssMI GATC 5 cut(s) 67, 252, 651, 818, 985
BssNI GRCGYC 2 cut(s) 364, 396
BssSI CACGAG 1 cut(s) 442
Bst2BI CACGAG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 3 cut(s) 153, 191, 635
Bst6I CTCTTC 1 cut(s) 945
BstACI GRCGYC 2 cut(s) 364, 396
BstC8I GCNNGC 7 cut(s) 130, 177, 302, 403, 771, 798, 957
BstDEI CTNAG 2 cut(s) 774, 1013
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 520
BstFNI CGCG 6 cut(s) 302, 304, 369, 455, 843, 863
BstH2I RGCGCY 3 cut(s) 367, 399, 615
BstHHI GCGC 8 cut(s) 302, 304, 366, 398, 431, 457, 614, 853
BstKTI GATC 5 cut(s) 70, 255, 654, 821, 988
BstMAI GTCTC 2 cut(s) 132, 159
BstMBI GATC 5 cut(s) 67, 252, 651, 818, 985
BstMCI CGRYCG 1 cut(s) 1045
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 3 cut(s) 241, 277, 1063
BstSCI CCNGG 9 cut(s) 231, 346, 359, 483, 580, 581, 913, 914, 977
BstSLI GKGCMC 1 cut(s) 809
BstUI CGCG 6 cut(s) 302, 304, 369, 455, 843, 863
BstV1I GCAGC 2 cut(s) 512, 514
BstX2I RGATCY 2 cut(s) 818, 985
BstYI RGATCY 2 cut(s) 818, 985
BstZI CGGCCG 1 cut(s) 1042
BsuRI GGCC 5 cut(s) 359, 423, 488, 807, 1044
BtgI CCRYGG 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 149
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 7 cut(s) 130, 177, 302, 403, 771, 798, 957
CaiI CAGNNNCTG 1 cut(s) 1070
CfoI GCGC 8 cut(s) 302, 304, 366, 398, 431, 457, 614, 853
Cfr10I RCCGGY 2 cut(s) 128, 955
Cfr9I CCCGGG 2 cut(s) 581, 914
CseI GACGC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 337, 382, 631
CviAII CATG 7 cut(s) 238, 244, 274, 317, 507, 801, 1060
CviQI GTAC 3 cut(s) 337, 382, 631
DdeI CTNAG 2 cut(s) 774, 1013
DinI GGCGCC 2 cut(s) 365, 397
DpnI GATC 5 cut(s) 69, 254, 653, 820, 987
DpnII GATC 5 cut(s) 67, 252, 651, 818, 985
DriI GACNNNNNGTC 2 cut(s) 330, 900
EaeI YGGCCR 1 cut(s) 1042
EagI CGGCCG 1 cut(s) 1042
Eam1104I CTCTTC 1 cut(s) 945
Eam1105I GACNNNNNGTC 2 cut(s) 330, 900
EarI CTCTTC 1 cut(s) 945
EciI GGCGGA 3 cut(s) 82, 666, 783
EclXI CGGCCG 1 cut(s) 1042
Eco24I GRGCYC 2 cut(s) 593, 809
Eco32I GATATC 2 cut(s) 660, 672
Eco47I GGWCC 7 cut(s) 55, 289, 324, 574, 894, 911, 934
Eco52I CGGCCG 1 cut(s) 1042
Eco88I CYCGRG 7 cut(s) 373, 391, 581, 592, 898, 914, 1054
EcoO109I RGGNCCY 3 cut(s) 55, 574, 805
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 346
EcoRV GATATC 2 cut(s) 660, 672
EcoT38I GRGCYC 2 cut(s) 593, 809
EgeI GGCGCC 2 cut(s) 365, 397
EheI GGCGCC 2 cut(s) 365, 397
FaeI CATG 7 cut(s) 241, 247, 277, 320, 510, 804, 1063
FaiI YATR 8 cut(s) 239, 245, 275, 318, 508, 802, 1005, 1061
FaqI GGGAC 3 cut(s) 29, 68, 947
FatI CATG 7 cut(s) 237, 243, 273, 316, 506, 800, 1059
FauI CCCGC 2 cut(s) 836, 868
FblI GTMKAC 1 cut(s) 1050
Fnu4HI GCNGC 6 cut(s) 180, 367, 399, 503, 526, 665
FokI GGATG 1 cut(s) 527
FriOI GRGCYC 2 cut(s) 593, 809
Fsp4HI GCNGC 6 cut(s) 180, 367, 399, 503, 526, 665
FspBI CTAG 1 cut(s) 1094
GlaI GCGC 8 cut(s) 301, 303, 365, 397, 430, 456, 613, 852
GluI GCNGC 6 cut(s) 180, 367, 399, 503, 526, 665
GsaI CCCAGC 2 cut(s) 524, 1084
HaeII RGCGCY 3 cut(s) 367, 399, 615
HaeIII GGCC 5 cut(s) 359, 423, 488, 807, 1044
HgaI GACGC 1 cut(s) 508
HhaI GCGC 8 cut(s) 302, 304, 366, 398, 431, 457, 614, 853
Hin1I GRCGYC 2 cut(s) 364, 396
Hin1II CATG 7 cut(s) 241, 247, 277, 320, 510, 804, 1063
Hin6I GCGC 8 cut(s) 300, 302, 364, 396, 429, 455, 612, 851
HinP1I GCGC 8 cut(s) 300, 302, 364, 396, 429, 455, 612, 851
HincII GTYRAC 2 cut(s) 112, 1051
HindII GTYRAC 2 cut(s) 112, 1051
HindIII AAGCTT 1 cut(s) 767
HphI GGTGA 3 cut(s) 64, 633, 745
Hpy166II GTNNAC 4 cut(s) 112, 118, 740, 1051
Hpy188I TCNGA 8 cut(s) 159, 214, 685, 857, 888, 894, 992, 1090
Hpy188III TCNNGA 3 cut(s) 167, 655, 1070
Hpy8I GTNNAC 4 cut(s) 112, 118, 740, 1051
Hpy99I CGWCG 3 cut(s) 68, 85, 749
HpyAV CCTTC 4 cut(s) 206, 349, 884, 888
HpyCH4III ACNGT 3 cut(s) 153, 191, 635
HpyCH4IV ACGT 2 cut(s) 80, 114
HpyCH4V TGCA 3 cut(s) 28, 510, 800
HpyF3I CTNAG 2 cut(s) 774, 1013
HpySE526I ACGT 2 cut(s) 80, 114
Hsp92I GRCGYC 2 cut(s) 364, 396
Hsp92II CATG 7 cut(s) 241, 247, 277, 320, 510, 804, 1063
HspAI GCGC 8 cut(s) 300, 302, 364, 396, 429, 455, 612, 851
KasI GGCGCC 2 cut(s) 363, 395
KflI GGGWCCC 1 cut(s) 55
KroI GCCGGC 2 cut(s) 128, 955
KroNI GCCGGC 2 cut(s) 130, 957
Kzo9I GATC 5 cut(s) 67, 252, 651, 818, 985
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 5 cut(s) 483, 796, 858, 1072, 1090
Lsp1109I GCAGC 2 cut(s) 512, 514
LweI GCATC 1 cut(s) 744
MaeI CTAG 1 cut(s) 1094
MaeII ACGT 2 cut(s) 80, 114
MaeIII GTNAC 5 cut(s) 191, 312, 491, 639, 725
MalI GATC 5 cut(s) 69, 254, 653, 820, 987
MboI GATC 5 cut(s) 67, 252, 651, 818, 985
MboII GAAGA 2 cut(s) 825, 962
MflI RGATCY 2 cut(s) 818, 985
MhlI GDGCHC 3 cut(s) 593, 793, 809
MluCI AATT 1 cut(s) 410
Mly113I GGCGCC 2 cut(s) 364, 396
MmeI TCCRAC 2 cut(s) 880, 911
MroNI GCCGGC 2 cut(s) 128, 955
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 2 cut(s) 242, 534
MspR9I CCNGG 9 cut(s) 233, 348, 361, 485, 582, 583, 915, 916, 979
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 6 cut(s) 302, 304, 369, 455, 843, 863
NaeI GCCGGC 2 cut(s) 130, 957
NarI GGCGCC 2 cut(s) 364, 396
NciI CCSGG 8 cut(s) 233, 361, 485, 582, 583, 915, 916, 979
NdeII GATC 5 cut(s) 67, 252, 651, 818, 985
NgoMIV GCCGGC 2 cut(s) 128, 955
NlaIII CATG 7 cut(s) 241, 247, 277, 320, 510, 804, 1063
NmeAIII GCCGAG 3 cut(s) 201, 699, 1070
NmuCI GTSAC 2 cut(s) 312, 639
NspI RCATGY 3 cut(s) 241, 277, 1063
OliI CACNNNNGTG 1 cut(s) 534
PauI GCGCGC 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 945
PcsI WCGNNNNNNNCGW 4 cut(s) 459, 465, 635, 1047
PdiI GCCGGC 2 cut(s) 130, 957
PdmI GAANNNNTTC 1 cut(s) 567
Pfl23II CGTACG 2 cut(s) 336, 630
PfoI TCCNGGA 1 cut(s) 977
PkrI GCNGC 6 cut(s) 181, 368, 400, 504, 527, 666
PluTI GGCGCC 2 cut(s) 367, 399
PpuMI RGGWCCY 2 cut(s) 55, 574
Psp5II RGGWCCY 2 cut(s) 55, 574
Psp6I CCWGG 1 cut(s) 346
PspFI CCCAGC 2 cut(s) 520, 1080
PspGI CCWGG 1 cut(s) 346
PspLI CGTACG 2 cut(s) 336, 630
PspOMI GGGCCC 1 cut(s) 805
PspPPI RGGWCCY 2 cut(s) 55, 574
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 2 cut(s) 818, 985
PteI GCGCGC 1 cut(s) 300
RsaI GTAC 3 cut(s) 338, 383, 632
RsaNI GTAC 3 cut(s) 337, 382, 631
RseI CAYNNNNRTG 2 cut(s) 242, 534
SalI GTCGAC 1 cut(s) 1049
SapI GCTCTTC 1 cut(s) 945
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 6 cut(s) 180, 367, 399, 503, 526, 665
Sau3AI GATC 5 cut(s) 67, 252, 651, 818, 985
ScrFI CCNGG 9 cut(s) 233, 348, 361, 485, 582, 583, 915, 916, 979
SduI GDGCHC 3 cut(s) 593, 793, 809
SfaNI GCATC 1 cut(s) 744
SfoI GGCGCC 2 cut(s) 365, 397
SinI GGWCC 7 cut(s) 55, 289, 324, 574, 894, 911, 934
SmaI CCCGGG 2 cut(s) 583, 916
SmiMI CAYNNNNRTG 2 cut(s) 242, 534
SrfI GCCCGGGC 1 cut(s) 583
Sse9I AATT 1 cut(s) 410
SspDI GGCGCC 2 cut(s) 363, 395
SspMI CTAG 1 cut(s) 1094
StyD4I CCNGG 9 cut(s) 231, 346, 359, 483, 580, 581, 913, 914, 977
TaaI ACNGT 3 cut(s) 153, 191, 635
TaiI ACGT 2 cut(s) 83, 117
TaqII GACCGA 1 cut(s) 341
TasI AATT 1 cut(s) 410
TauI GCSGC 4 cut(s) 182, 369, 401, 667
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 2 cut(s) 312, 639
TseI GCWGC 2 cut(s) 502, 525
Tsp45I GTSAC 2 cut(s) 312, 639
TspDTI ATGAA 2 cut(s) 260, 794
TspGWI ACGGA 5 cut(s) 39, 97, 150, 189, 324
TspMI CCCGGG 2 cut(s) 581, 914
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 7 cut(s) 55, 289, 324, 574, 894, 911, 934
XapI RAATTY 1 cut(s) 410
XceI RCATGY 3 cut(s) 241, 277, 1063
XmaI CCCGGG 2 cut(s) 581, 914
XmiI GTMKAC 1 cut(s) 1050
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.