MD02G1304100.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0003417
Physical Location & Seq
Reverse (-)
35769517 .. 35770059
543 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1304100.v1.1.491

Sequence Viewer

Length: 543 bp
ATGTTCCTCGACTCGCTCGCCGCTCTCCATCGTTACCTCCCGTCTAATGAGTCTGACTCGCTAGCTGAGGACCCGGACGTGCCAATGAACCCGATCTCCTGCGATCAGTTCCGGATGTTCGAGTTCAAGGTCCGGAGGTGCGCGCACGGCAGGTCGCACGATTGGACCGACTGTCCATACGCCCACCCGGGCGAGAAGGCCCGGCGTCGCGACCCGAGAAAGTACCACTACTCTGGCGCTGCATGCCCTGACTTCCGCAAGGGCCACTACACGAAGGGTGACTCGTGCGAGTTCGCTCACGGTGTTTTCGAGTGCTGGCTCCACCCGGCCTGGTACCGGACCCAGCCATGCAAGAACGGGTTGCGCTGCAACCGCCGGGTCTGCTTATTTACCCACACACCTGAACAGTTCCGGGTCCTGCCCGGTCAGAGCCCGAGAACCCAAGCGTCGGGAGCTTTGGACTCGTATCCATTTGGTTCGTCCCCCACCTCGATCCTGATGTCACCTCCATTGTCTCCACCGCCATCATCATCCCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006417 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0017148 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032870 GO:0034248 GO:0034249 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044464 GO:0045935 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

181

Amino Acids

20.39

Weight (kDa)

8.6

Isoelectric Point (pI)

76.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 37 - 69 1.9e-20 AtC3H23-like, CCCH zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 333
AccBSI CCGCTC 1 cut(s) 23
AccII CGCG 2 cut(s) 143, 210
AccIII TCCGGA 2 cut(s) 111, 132
AciI CCGC 4 cut(s) 21, 256, 373, 521
AclWI GGATC 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 2 cut(s) 224, 335
AfiI CCNNNNNNNGG 2 cut(s) 336, 448
AgsI TTSAA 1 cut(s) 127
AhdI GACNNNNNGTC 1 cut(s) 171
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 329
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 3 cut(s) 65, 455, 539
AluI AGCT 3 cut(s) 65, 455, 539
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 1 cut(s) 487
Ama87I CYCGRG 3 cut(s) 187, 214, 433
Aor13HI TCCGGA 2 cut(s) 111, 132
AoxI GGCC 3 cut(s) 198, 262, 327
ApeKI GCWGC 2 cut(s) 239, 366
Asp718I GGTACC 1 cut(s) 333
AspLEI GCGC 4 cut(s) 143, 145, 239, 366
AspS9I GGNCC 7 cut(s) 70, 130, 165, 199, 262, 339, 415
AsuC2I CCSGG 8 cut(s) 74, 188, 189, 202, 326, 377, 413, 423
AsuHPI GGTGA 2 cut(s) 290, 495
AsuNHI GCTAGC 1 cut(s) 61
AvaI CYCGRG 3 cut(s) 187, 214, 433
AvaII GGWCC 5 cut(s) 70, 130, 165, 339, 415
BanI GGYRCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 434
BauI CACGAG 1 cut(s) 283
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 226, 353
BccI CCATC 2 cut(s) 36, 532
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 331
BciVI GTATCC 1 cut(s) 477
BcnI CCSGG 8 cut(s) 74, 188, 189, 202, 326, 377, 413, 423
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 141
BfuI GTATCC 1 cut(s) 477
BisI GCNGC 3 cut(s) 21, 240, 367
BlsI GCNGC 3 cut(s) 22, 241, 368
Bme1390I CCNGG 9 cut(s) 74, 188, 189, 202, 326, 331, 377, 413, 423
Bme18I GGWCC 5 cut(s) 70, 130, 165, 339, 415
BmeRI GACNNNNNGTC 1 cut(s) 171
BmeT110I CYCGRG 3 cut(s) 187, 214, 433
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 7 cut(s) 70, 130, 165, 199, 262, 339, 415
BmiI GGNNCC 5 cut(s) 72, 320, 335, 341, 416
BmrFI CCNGG 9 cut(s) 74, 188, 189, 202, 326, 331, 377, 413, 423
BmtI GCTAGC 1 cut(s) 65
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bpu10I CCTNAGC 1 cut(s) 66
BpuMI CCSGG 8 cut(s) 74, 188, 189, 202, 326, 377, 413, 423
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 3 cut(s) 111, 132, 336
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 448
BseAI TCCGGA 2 cut(s) 111, 132
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 120, 530
BseLI CCNNNNNNNGG 2 cut(s) 336, 448
BseMII CTCAG 1 cut(s) 57
BsePI GCGCGC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 226, 353
BseYI CCCAGC 2 cut(s) 342, 535
Bsh1236I CGCG 2 cut(s) 143, 210
BshFI GGCC 3 cut(s) 200, 264, 329
BshNI GGYRCC 1 cut(s) 333
BsiHKCI CYCGRG 3 cut(s) 187, 214, 433
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 2 cut(s) 336, 448
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 3 cut(s) 200, 264, 329
BsoBI CYCGRG 3 cut(s) 187, 214, 433
Bsp1286I GDGCHC 1 cut(s) 434
Bsp13I TCCGGA 2 cut(s) 111, 132
Bsp143I GATC 3 cut(s) 93, 103, 492
Bsp68I TCGCGA 1 cut(s) 210
BspACI CCGC 4 cut(s) 21, 256, 373, 521
BspANI GGCC 3 cut(s) 200, 264, 329
BspCNI CTCAG 1 cut(s) 58
BspEI TCCGGA 2 cut(s) 111, 132
BspFNI CGCG 2 cut(s) 143, 210
BspLI GGNNCC 5 cut(s) 72, 320, 335, 341, 416
BspMI ACCTGC 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 1 cut(s) 487
BspT107I GGYRCC 1 cut(s) 333
BsrBI CCGCTC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 187
BssHII GCGCGC 1 cut(s) 141
BssMI GATC 3 cut(s) 93, 103, 492
BssNI GRCGYC 1 cut(s) 205
BssSI CACGAG 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 3 cut(s) 173, 302, 408
BstACI GRCGYC 1 cut(s) 205
BstC8I GCNNGC 5 cut(s) 18, 63, 143, 244, 317
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 120, 530
BstFNI CGCG 2 cut(s) 143, 210
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 4 cut(s) 143, 145, 239, 366
BstKTI GATC 3 cut(s) 96, 106, 495
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 3 cut(s) 93, 103, 492
BstMWI GCNNNNNNNGC 5 cut(s) 147, 243, 372, 381, 452
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 9 cut(s) 72, 186, 187, 200, 324, 329, 375, 411, 421
BstUI CGCG 2 cut(s) 143, 210
BstV1I GCAGC 2 cut(s) 226, 353
BstXI CCANNNNNNTGG 1 cut(s) 233
BsuI GTATCC 1 cut(s) 477
BsuRI GGCC 3 cut(s) 200, 264, 329
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 2 cut(s) 120, 530
BtuMI TCGCGA 1 cut(s) 210
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 5 cut(s) 18, 63, 143, 244, 317
CfoI GCGC 4 cut(s) 143, 145, 239, 366
Cfr13I GGNCC 7 cut(s) 70, 130, 165, 199, 262, 339, 415
Cfr9I CCCGGG 1 cut(s) 187
CseI GACGC 2 cut(s) 194, 435
Csp6I GTAC 2 cut(s) 223, 334
CviAII CATG 2 cut(s) 243, 348
CviJI RGCY 9 cut(s) 65, 200, 264, 319, 329, 346, 432, 455, 539
CviKI_1 RGCY 9 cut(s) 65, 200, 264, 319, 329, 346, 432, 455, 539
CviQI GTAC 2 cut(s) 223, 334
DdeI CTNAG 1 cut(s) 66
DpnI GATC 3 cut(s) 95, 105, 494
DpnII GATC 3 cut(s) 93, 103, 492
DriI GACNNNNNGTC 1 cut(s) 171
Eam1105I GACNNNNNGTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 434
Eco47I GGWCC 5 cut(s) 70, 130, 165, 339, 415
Eco88I CYCGRG 3 cut(s) 187, 214, 433
EcoO109I RGGNCCY 2 cut(s) 70, 415
EcoRII CCWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 434
FaeI CATG 2 cut(s) 246, 351
FaiI YATR 3 cut(s) 178, 244, 349
FaqI GGGAC 1 cut(s) 466
FatI CATG 2 cut(s) 242, 347
Fnu4HI GCNGC 3 cut(s) 21, 240, 367
FokI GGATG 2 cut(s) 127, 517
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 3 cut(s) 21, 240, 367
FspBI CTAG 1 cut(s) 62
GlaI GCGC 4 cut(s) 142, 144, 238, 365
GluI GCNGC 3 cut(s) 21, 240, 367
GsaI CCCAGC 2 cut(s) 346, 539
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 3 cut(s) 200, 264, 329
HgaI GACGC 2 cut(s) 194, 435
HhaI GCGC 4 cut(s) 143, 145, 239, 366
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 2 cut(s) 246, 351
Hin6I GCGC 4 cut(s) 141, 143, 237, 364
HinP1I GCGC 4 cut(s) 141, 143, 237, 364
HinfI GANTC 5 cut(s) 11, 50, 56, 281, 461
HphI GGTGA 2 cut(s) 290, 495
Hpy188I TCNGA 2 cut(s) 55, 429
Hpy188III TCNNGA 5 cut(s) 112, 133, 209, 450, 496
Hpy99I CGWCG 2 cut(s) 210, 451
HpyAV CCTTC 2 cut(s) 190, 268
HpyCH4III ACNGT 3 cut(s) 173, 302, 408
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 242, 351, 369
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 243, 372, 381, 452
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 2 cut(s) 246, 351
HspAI GCGC 4 cut(s) 141, 143, 237, 364
Kpn2I TCCGGA 2 cut(s) 111, 132
KpnI GGTACC 1 cut(s) 337
Kzo9I GATC 3 cut(s) 93, 103, 492
LmnI GCTCC 2 cut(s) 324, 452
Lsp1109I GCAGC 2 cut(s) 226, 353
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 3 cut(s) 32, 278, 501
MalI GATC 3 cut(s) 95, 105, 494
MbiI CCGCTC 1 cut(s) 23
MboI GATC 3 cut(s) 93, 103, 492
MhlI GDGCHC 1 cut(s) 434
MlyI GAGTC 5 cut(s) 5, 50, 59, 275, 455
MnlI CCTC 6 cut(s) 17, 47, 61, 129, 499, 516
MroI TCCGGA 2 cut(s) 111, 132
MspR9I CCNGG 9 cut(s) 74, 188, 189, 202, 326, 331, 377, 413, 423
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 2 cut(s) 143, 210
MwoI GCNNNNNNNGC 5 cut(s) 147, 243, 372, 381, 452
NciI CCSGG 8 cut(s) 74, 188, 189, 202, 326, 377, 413, 423
NdeII GATC 3 cut(s) 93, 103, 492
NheI GCTAGC 1 cut(s) 61
NlaIII CATG 2 cut(s) 246, 351
NlaIV GGNNCC 5 cut(s) 72, 320, 335, 341, 416
NmuCI GTSAC 2 cut(s) 278, 501
NruI TCGCGA 1 cut(s) 210
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PauI GCGCGC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 306
PkrI GCNGC 3 cut(s) 22, 241, 368
PleI GAGTC 5 cut(s) 5, 50, 58, 275, 455
PpsI GAGTC 5 cut(s) 5, 50, 58, 275, 455
PpuMI RGGWCCY 2 cut(s) 70, 415
Psp5II RGGWCCY 2 cut(s) 70, 415
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 2 cut(s) 342, 535
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 5 cut(s) 72, 320, 335, 341, 416
PspPI GGNCC 7 cut(s) 70, 130, 165, 199, 262, 339, 415
PspPPI RGGWCCY 2 cut(s) 70, 415
PteI GCGCGC 1 cut(s) 141
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 2 cut(s) 224, 335
RsaNI GTAC 2 cut(s) 223, 334
SatI GCNGC 3 cut(s) 21, 240, 367
Sau3AI GATC 3 cut(s) 93, 103, 492
Sau96I GGNCC 7 cut(s) 70, 130, 165, 199, 262, 339, 415
SchI GAGTC 5 cut(s) 5, 50, 59, 275, 455
ScrFI CCNGG 9 cut(s) 74, 188, 189, 202, 326, 331, 377, 413, 423
SduI GDGCHC 1 cut(s) 434
SinI GGWCC 5 cut(s) 70, 130, 165, 339, 415
SmaI CCCGGG 1 cut(s) 189
SphI GCATGC 1 cut(s) 246
SsiI CCGC 4 cut(s) 21, 256, 373, 521
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 9 cut(s) 72, 186, 187, 200, 324, 329, 375, 411, 421
TaaI ACNGT 3 cut(s) 173, 302, 408
TaiI ACGT 1 cut(s) 81
TaqI TCGA 4 cut(s) 9, 120, 309, 491
TaqII GACCGA 1 cut(s) 182
TauI GCSGC 1 cut(s) 23
TseFI GTSAC 2 cut(s) 278, 501
TseI GCWGC 2 cut(s) 239, 366
Tsp45I GTSAC 2 cut(s) 278, 501
TspDTI ATGAA 1 cut(s) 101
TspMI CCCGGG 1 cut(s) 187
VpaK11BI GGWCC 5 cut(s) 70, 130, 165, 339, 415
XceI RCATGY 1 cut(s) 246
XmaI CCCGGG 1 cut(s) 187
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.