Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003417

Physical Location & Seq

Genomic Coordinates Forward (+)

65297478 .. 65299453

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG494000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACTATGTGGCCTACTTGGCACATACTGTCTCTCCCAAAGCAGTTTATATATCACAGACTCACCTTCAACCTTTCTCGCATTTCAACTCTCTCTCTCTCTCCCCTTTTCATAAACTCCAAAATGATGCTCGGAGAACCGAGCCGACTCGCTCCGACCCTCAAGGTCGCTCCGTGGGACCCATTTGACGACCCGACCTCCGGTCTAGGGTCGCCGTTTTCCGTTCGCAGCCCGTCTGCCAATGCCGGCTTCCTCGACTCGCTCTCGGCGCTCCACCGGTTCCTTCCGTCGAACGAGTCCGACTCACTGAGCGACGACCCGGACATGCCCCTCATTTCCTGCGACCAGTTCCGGATGTTTGAGTTCAAGGTTCGGCGCTGCGCACGTGGCAGGTCTCATGACTGGACCGAGTGCCCGTACGCCCACCCGGGCGAGAAGGCCCGCCGCCGCGACCCGAGGAAGTACCACTATTCGGGTTCGGCCTGCCCCGATTTCCGCAAGGGCAACTGCGCTAAGGGAGACTCCTGCGAGTTCGCTCACGGCGTTTTCGAGTGCTGGCTCCACCCGGCTCGCTACCGGACCCAGCCATGCAAGGACGGGCTGGCCTGTCACCGCCGGGTCTGCTTCTTCGCCCACACGCCCGAACAGCTCCGGGTCCTGCCCGGCCACAGCCCGAGGACTCACGGGTCGGGTTTCTTCGATTCGCCCACTTCGCCTCCGATATCTCCGCCGTCGGATTCGCCGCCAATGTCGCCGAACAGTCCGCAACTCCGCCTCAACTCGGTGAGTGAACTCGTCGCGTCCATGCGCAACTTCAAGCTGGCCAAGATGCAAATGAGCACCACCCCTCCTTCGTGGGTCGGATCCGGGTTCGGATCTCCCCGCGGACCTCCGCTCCGACCCGATTTCTTTAGCCTCCCCAACACCCCGACTCGCAATTCGGGTCGGTCCGGACCCGGCCCGTTTGATCTGTGGGAGCACTCGCTGGCTGAAGAGCCGGCAATGGAGAGGGTGGAGTCGGGAAGGGACCTAAGGGCGAGAATGTACGCGAAGCTGAGTAAGGATAACTCGATGGGCCGGGTTGACTCAGGCGGGTTTTCGGGTCCTGATGTGGAGTGGGTATCGGAGTTAGTGAGTGAGGGCGAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006417 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0017148 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032870 GO:0034248 GO:0034249 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044464 GO:0045935 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

383

Amino Acids

42.73

Weight (kDa)

8.67

Isoelectric Point (pI)

67.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_AtC3H23	PF25512	117 - 149	3.7e-21	AtC3H23-like, CCCH zinc finger
zf_CCCH_4	PF18345	162 - 180	8.5e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19810 AT4G29190
fragaria_vesca	FvH4_1g06640 FvH4_2g32360
malus_domestica	MD02G1069500.v1.1 MD02G1304100.v1.1 MD08G1075000.v1.1 MD15G1062500.v1.1 MD15G1201300.v1.1
prunus_persica	Prupe.1G416500_v2.0.a1 Prupe.7G216200_v2.0.a1
pyrus_communis	pycom02g05500 pycom08g06180 pycom15g05920 pycom15g17880
rosa_chinensis	RchiOBHm_Chr2g0092381 RchiOBHm_Chr6g0310331
rosa_laevigata	RLG00000010491 RLG00000016304
rosa_multiflora	Rmu_co8369329.1_g000001 Rmu_sc0001195.1_g000002 Rmu_sc0002348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149180 Rroxscaffold_7G00158660
rosa_rugosa	Rorug02G0025600 Rorug06G0379100
rosa_samantha	Rh2AG071400 Rh2BG071100 Rh2CG072500 Rh2DG069800 Rh6AG493300 Rh6BG502900 Rh6CG507900 Rh6DG494000
rosa_wichuraiana	Rw2G006100 Rw6G042920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	685
Acc16I	TGCGCA	2 cut(s)	382, 809
Acc36I	ACCTGC	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	895
AccII	CGCG	4 cut(s)	450, 800, 885, 1049
AccIII	TCCGGA	2 cut(s)	351, 950
AclWI	GGATC	3 cut(s)	858, 871, 883
AcoI	YGGCCR	2 cut(s)	664, 822
AcuI	CTGAAG	1 cut(s)	1011
AcvI	CACGTG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	419, 464, 1046
AfiI	CCNNNNNNNGG	4 cut(s)	200, 207, 472, 781
AgeI	ACCGGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	70, 87, 367, 817
AhdI	GACNNNNNGTC	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	649, 820, 1054
AluI	AGCT	3 cut(s)	649, 820, 1054
Alw21I	GWGCWC	2 cut(s)	842, 981
Alw26I	GTCTC	4 cut(s)	36, 399, 513, 1139
AlwI	GGATC	3 cut(s)	858, 871, 883
Ama87I	CYCGRG	3 cut(s)	427, 454, 673
Aor13HI	TCCGGA	2 cut(s)	351, 950
AoxI	GGCC	8 cut(s)	11, 438, 480, 603, 664, 822, 958, 1075
ApeKI	GCWGC	2 cut(s)	228, 378
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
AsiGI	ACCGGT	1 cut(s)	276
AspLEI	GCGC	5 cut(s)	271, 378, 383, 512, 810
AsuHPI	GGTGA	3 cut(s)	55, 602, 796
AvaI	CYCGRG	3 cut(s)	427, 454, 673
AvaII	GGWCC	9 cut(s)	178, 405, 579, 655, 887, 948, 953, 1027, 1103
AxyI	CCTNAGG	1 cut(s)	1031
BaeGI	GKGCMC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	824
BamHI	GGATCC	1 cut(s)	863
BbrPI	CACGTG	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	842, 981
BbvI	GCAGC	2 cut(s)	240, 365
BccI	CCATC	1 cut(s)	1066
BceAI	ACGGC	3 cut(s)	199, 556, 715
BcoDI	GTCTC	4 cut(s)	36, 399, 513, 1139
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	2 cut(s)	272, 379
BfuAI	ACCTGC	1 cut(s)	381
BglI	GCCNNNNNGGC	1 cut(s)	19
BisI	GCNGC	5 cut(s)	229, 379, 445, 448, 743
BlsI	GCNGC	5 cut(s)	230, 380, 446, 449, 744
Bme18I	GGWCC	9 cut(s)	178, 405, 579, 655, 887, 948, 953, 1027, 1103
BmeRI	GACNNNNNGTC	1 cut(s)	201
BmeT110I	CYCGRG	3 cut(s)	427, 454, 673
BmsI	GCATC	2 cut(s)	117, 819
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	386
BsaI	GGTCTC	2 cut(s)	399, 1139
BsaJI	CCNNGG	5 cut(s)	173, 427, 455, 674, 883
BsaWI	WCCGGW	5 cut(s)	200, 276, 351, 576, 950
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 207, 472, 781
Bse118I	RCCGGY	3 cut(s)	245, 276, 997
Bse1I	ACTGG	2 cut(s)	346, 407
Bse21I	CCTNAGG	1 cut(s)	1031
Bse3DI	GCAATG	1 cut(s)	1008
BseAI	TCCGGA	2 cut(s)	351, 950
BseDI	CCNNGG	5 cut(s)	173, 427, 455, 674, 883
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	200, 207, 472, 781
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	3 cut(s)	299, 1046, 1101
BseNI	ACTGG	2 cut(s)	346, 407
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	240, 365
BseYI	CCCAGC	1 cut(s)	582
Bsh1236I	CGCG	4 cut(s)	450, 800, 885, 1049
BshFI	GGCC	8 cut(s)	13, 440, 482, 605, 666, 824, 960, 1077
BshTI	ACCGGT	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	842, 981
BsiHKCI	CYCGRG	3 cut(s)	427, 454, 673
BsiWI	CGTACG	1 cut(s)	417
BslFI	GGGAC	2 cut(s)	191, 1040
BslI	CCNNNNNNNGG	4 cut(s)	200, 207, 472, 781
BsmAI	GTCTC	4 cut(s)	36, 399, 513, 1139
BsmFI	GGGAC	2 cut(s)	191, 1040
BsnI	GGCC	8 cut(s)	13, 440, 482, 605, 666, 824, 960, 1077
Bso31I	GGTCTC	2 cut(s)	399, 1139
BsoBI	CYCGRG	3 cut(s)	427, 454, 673
Bsp1286I	GDGCHC	3 cut(s)	416, 842, 981
Bsp13I	TCCGGA	2 cut(s)	351, 950
Bsp143I	GATC	3 cut(s)	863, 875, 967
BspANI	GGCC	8 cut(s)	13, 440, 482, 605, 666, 824, 960, 1077
BspCNI	CTCAG	3 cut(s)	300, 1047, 1100
BspEI	TCCGGA	2 cut(s)	351, 950
BspFNI	CGCG	4 cut(s)	450, 800, 885, 1049
BspHI	TCATGA	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	858, 871, 883
BspQI	GCTCTTC	1 cut(s)	987
BspTNI	GGTCTC	2 cut(s)	399, 1139
BsrBI	CCGCTC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	1008
BsrFI	RCCGGY	3 cut(s)	245, 276, 997
BsrI	ACTGG	2 cut(s)	346, 407
BssAI	RCCGGY	3 cut(s)	245, 276, 997
BssECI	CCNNGG	5 cut(s)	173, 427, 455, 674, 883
BssMI	GATC	3 cut(s)	863, 875, 967
Bst4CI	ACNGT	2 cut(s)	30, 761
Bst6I	CTCTTC	1 cut(s)	987
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	9 cut(s)	247, 442, 484, 557, 571, 603, 822, 987, 999
BstDEI	CTNAG	5 cut(s)	308, 513, 1031, 1055, 1087
BstDSI	CCRYGG	2 cut(s)	173, 883
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	4 cut(s)	450, 800, 885, 1049
BstH2I	RGCGCY	2 cut(s)	272, 379
BstHHI	GCGC	5 cut(s)	271, 378, 383, 512, 810
BstKTI	GATC	3 cut(s)	866, 878, 970
BstMAI	GTCTC	4 cut(s)	36, 399, 513, 1139
BstMBI	GATC	3 cut(s)	863, 875, 967
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 268, 387, 621, 646, 712, 751
BstNSI	RCATGY	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	416
BstUI	CGCG	4 cut(s)	450, 800, 885, 1049
BstV1I	GCAGC	2 cut(s)	240, 365
BstX2I	RGATCY	2 cut(s)	863, 875
BstYI	RGATCY	2 cut(s)	863, 875
Bsu36I	CCTNAGG	1 cut(s)	1031
BsuRI	GGCC	8 cut(s)	13, 440, 482, 605, 666, 824, 960, 1077
BtgI	CCRYGG	2 cut(s)	173, 883
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	9 cut(s)	247, 442, 484, 557, 571, 603, 822, 987, 999
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	5 cut(s)	271, 378, 383, 512, 810
Cfr10I	RCCGGY	3 cut(s)	245, 276, 997
Cfr42I	CCGCGG	1 cut(s)	886
Cfr9I	CCCGGG	1 cut(s)	427
CpoI	CGGWCCG	1 cut(s)	948
CseI	GACGC	1 cut(s)	789
Csp6I	GTAC	3 cut(s)	418, 463, 1045
CspAI	ACCGGT	1 cut(s)	276
CspI	CGGWCCG	1 cut(s)	948
CviAII	CATG	4 cut(s)	325, 398, 588, 805
CviQI	GTAC	3 cut(s)	418, 463, 1045
DdeI	CTNAG	5 cut(s)	308, 513, 1031, 1055, 1087
DpnI	GATC	3 cut(s)	865, 877, 969
DpnII	GATC	3 cut(s)	863, 875, 967
DrdI	GACNNNNNNGTC	1 cut(s)	685
DriI	GACNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	685
EaeI	YGGCCR	2 cut(s)	664, 822
Eam1104I	CTCTTC	1 cut(s)	987
Eam1105I	GACNNNNNGTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	987
EciI	GGCGGA	2 cut(s)	717, 761
Eco31I	GGTCTC	2 cut(s)	399, 1139
Eco32I	GATATC	1 cut(s)	723
Eco47I	GGWCC	9 cut(s)	178, 405, 579, 655, 887, 948, 953, 1027, 1103
Eco57I	CTGAAG	1 cut(s)	1011
Eco72I	CACGTG	1 cut(s)	386
Eco81I	CCTNAGG	1 cut(s)	1031
Eco88I	CYCGRG	3 cut(s)	427, 454, 673
EcoO109I	RGGNCCY	4 cut(s)	178, 655, 1027, 1103
EcoRV	GATATC	1 cut(s)	723
FaeI	CATG	4 cut(s)	328, 401, 591, 808
FaiI	YATR	9 cut(s)	8, 26, 50, 52, 113, 326, 399, 589, 806
FaqI	GGGAC	2 cut(s)	191, 1040
FatI	CATG	4 cut(s)	324, 397, 587, 804
FauI	CCCGC	3 cut(s)	449, 890, 1085
Fnu4HI	GCNGC	5 cut(s)	229, 379, 445, 448, 743
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	5 cut(s)	229, 379, 445, 448, 743
FspBI	CTAG	1 cut(s)	206
FspI	TGCGCA	2 cut(s)	382, 809
GlaI	GCGC	5 cut(s)	270, 377, 382, 511, 809
GluI	GCNGC	5 cut(s)	229, 379, 445, 448, 743
GsaI	CCCAGC	1 cut(s)	586
HaeII	RGCGCY	2 cut(s)	272, 379
HaeIII	GGCC	8 cut(s)	13, 440, 482, 605, 666, 824, 960, 1077
HgaI	GACGC	1 cut(s)	789
HhaI	GCGC	5 cut(s)	271, 378, 383, 512, 810
Hin1II	CATG	4 cut(s)	328, 401, 591, 808
Hin6I	GCGC	5 cut(s)	269, 376, 381, 510, 808
HinP1I	GCGC	5 cut(s)	269, 376, 381, 510, 808
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HphI	GGTGA	3 cut(s)	55, 602, 796
Hpy166II	GTNNAC	2 cut(s)	791, 1084
Hpy188I	TCNGA	9 cut(s)	134, 156, 301, 720, 736, 863, 875, 899, 1126
Hpy188III	TCNNGA	5 cut(s)	352, 398, 951, 1020, 1106
Hpy8I	GTNNAC	2 cut(s)	791, 1084
Hpy99I	CGWCG	4 cut(s)	292, 317, 736, 800
HpyAV	CCTTC	5 cut(s)	76, 293, 430, 861, 1017
HpyCH4III	ACNGT	2 cut(s)	30, 761
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	2 cut(s)	591, 832
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 268, 387, 621, 646, 712, 751
HpyF3I	CTNAG	5 cut(s)	308, 513, 1031, 1055, 1087
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	4 cut(s)	328, 401, 591, 808
HspAI	GCGC	5 cut(s)	269, 376, 381, 510, 808
KflI	GGGWCCC	1 cut(s)	178
Kpn2I	TCCGGA	2 cut(s)	351, 950
KroI	GCCGGC	2 cut(s)	245, 997
KroNI	GCCGGC	2 cut(s)	247, 999
KspI	CCGCGG	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	863, 875, 967
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	7 cut(s)	157, 175, 276, 564, 654, 900, 976
Lsp1109I	GCAGC	2 cut(s)	240, 365
LweI	GCATC	2 cut(s)	117, 819
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	3 cut(s)	865, 877, 969
MbiI	CCGCTC	1 cut(s)	895
MboI	GATC	3 cut(s)	863, 875, 967
MboII	GAAGA	3 cut(s)	619, 688, 1004
MflI	RGATCY	2 cut(s)	863, 875
MhlI	GDGCHC	3 cut(s)	416, 842, 981
MlsI	TGGCCA	1 cut(s)	824
MluCI	AATT	1 cut(s)	937
MluNI	TGGCCA	1 cut(s)	824
MmeI	TCCRAC	5 cut(s)	179, 324, 714, 841, 922
Mox20I	TGGCCA	1 cut(s)	824
MroI	TCCGGA	2 cut(s)	351, 950
MroNI	GCCGGC	2 cut(s)	245, 997
MscI	TGGCCA	1 cut(s)	824
Msp20I	TGGCCA	1 cut(s)	824
MspA1I	CMGCKG	1 cut(s)	885
MteI	GCGCNGCGC	1 cut(s)	379
MvnI	CGCG	4 cut(s)	450, 800, 885, 1049
MwoI	GCNNNNNNNGC	7 cut(s)	19, 268, 387, 621, 646, 712, 751
NaeI	GCCGGC	2 cut(s)	247, 999
NdeII	GATC	3 cut(s)	863, 875, 967
NgoMIV	GCCGGC	2 cut(s)	245, 997
NlaIII	CATG	4 cut(s)	328, 401, 591, 808
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	608
NsbI	TGCGCA	2 cut(s)	382, 809
NspI	RCATGY	1 cut(s)	328
PagI	TCATGA	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	987
PcsI	WCGNNNNNNNCGW	2 cut(s)	540, 546
PdiI	GCCGGC	2 cut(s)	247, 999
PfeI	GAWTC	2 cut(s)	701, 737
Pfl23II	CGTACG	1 cut(s)	417
PinAI	ACCGGT	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	230, 380, 446, 449, 744
PmaCI	CACGTG	1 cut(s)	386
PmlI	CACGTG	1 cut(s)	386
Ppu21I	YACGTR	1 cut(s)	386
PpuMI	RGGWCCY	4 cut(s)	178, 655, 1027, 1103
Psp5II	RGGWCCY	4 cut(s)	178, 655, 1027, 1103
PspCI	CACGTG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	582
PspLI	CGTACG	1 cut(s)	417
PspPPI	RGGWCCY	4 cut(s)	178, 655, 1027, 1103
PsuI	RGATCY	2 cut(s)	863, 875
RsaI	GTAC	3 cut(s)	419, 464, 1046
RsaNI	GTAC	3 cut(s)	418, 463, 1045
Rsr2I	CGGWCCG	1 cut(s)	948
RsrII	CGGWCCG	1 cut(s)	948
SacII	CCGCGG	1 cut(s)	886
SapI	GCTCTTC	1 cut(s)	987
SatI	GCNGC	5 cut(s)	229, 379, 445, 448, 743
Sau3AI	GATC	3 cut(s)	863, 875, 967
SduI	GDGCHC	3 cut(s)	416, 842, 981
SfaNI	GCATC	2 cut(s)	117, 819
Sfr303I	CCGCGG	1 cut(s)	886
SgrBI	CCGCGG	1 cut(s)	886
SinI	GGWCC	9 cut(s)	178, 405, 579, 655, 887, 948, 953, 1027, 1103
SmaI	CCCGGG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	937
SspMI	CTAG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	30, 761
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	5 cut(s)	255, 290, 549, 699, 1070
TaqII	GACCGA	2 cut(s)	422, 936
TasI	AATT	1 cut(s)	937
TauI	GCSGC	3 cut(s)	447, 450, 745
TfiI	GAWTC	2 cut(s)	701, 737
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	2 cut(s)	228, 378
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	3 cut(s)	162, 211, 276
TspMI	CCCGGG	1 cut(s)	427
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	9 cut(s)	178, 405, 579, 655, 887, 948, 953, 1027, 1103
XceI	RCATGY	1 cut(s)	328
XmaI	CCCGGG	1 cut(s)	427
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.