Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003417

Physical Location & Seq

Genomic Coordinates Forward (+)

2004378 .. 2004548

Gene Structure 171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0025600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGCCGGAGATCGTTTTCTTTTTCAGTTTGATCACGAAACTTATCGCAATAGGGCTCTGCATGGCGGGCCGTGGTTTTATAGGAATACAATGTTTCTGCTTGGAGACTATGATGGGATTGGTTCGGTGGAGACAGTCACGTTGTGGAAGTTGGAGACTTGGGTGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

56

Amino Acids

6.52

Weight (kDa)

9.37

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19810 AT4G29190
fragaria_vesca	FvH4_1g06640 FvH4_2g32360
malus_domestica	MD02G1069500.v1.1 MD02G1304100.v1.1 MD08G1075000.v1.1 MD15G1062500.v1.1 MD15G1201300.v1.1
prunus_persica	Prupe.1G416500_v2.0.a1 Prupe.7G216200_v2.0.a1
pyrus_communis	pycom02g05500 pycom08g06180 pycom15g05920 pycom15g17880
rosa_chinensis	RchiOBHm_Chr2g0092381 RchiOBHm_Chr6g0310331
rosa_laevigata	RLG00000010491 RLG00000016304
rosa_multiflora	Rmu_co8369329.1_g000001 Rmu_sc0001195.1_g000002 Rmu_sc0002348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149180 Rroxscaffold_7G00158660
rosa_rugosa	Rorug02G0025600 Rorug06G0379100
rosa_samantha	Rh2AG071400 Rh2BG071100 Rh2CG072500 Rh2DG069800 Rh6AG493300 Rh6BG502900 Rh6CG507900 Rh6DG494000
rosa_wichuraiana	Rw2G006100 Rw6G042920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	143
Alw26I	GTCTC	3 cut(s)	98, 124, 148
AoxI	GGCC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	57
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	3 cut(s)	98, 124, 148
BmgT120I	GGNCC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	5
BsmAI	GTCTC	3 cut(s)	98, 124, 148
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	9, 30
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	9, 30
Bst4CI	ACNGT	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	12, 33
BstMAI	GTCTC	3 cut(s)	98, 124, 148
BstMBI	GATC	2 cut(s)	9, 30
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	67
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	2 cut(s)	55, 69
CviKI_1	RGCY	2 cut(s)	55, 69
DpnI	GATC	2 cut(s)	11, 32
DpnII	GATC	2 cut(s)	9, 30
DraIII	CACNNNGTG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 80, 110
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	64
HpaII	CCGG	1 cut(s)	5
Hpy188III	TCNNGA	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	9, 30
LpnPI	CCDG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	2 cut(s)	11, 32
MboI	GATC	2 cut(s)	9, 30
MhlI	GDGCHC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	131
MspI	CCGG	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	2 cut(s)	9, 30
NlaIII	CATG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	9, 30
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	1 cut(s)	142
SgeI	CNNG	7 cut(s)	17, 46, 73, 78, 83, 112, 150
SsiI	CCGC	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.