AT4G29190

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003417
Physical Location & Seq
Reverse (-)
14391849 .. 14393381
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29190.1

Sequence Viewer

Length: 1071 bp
ATGATGATCGGAGAAACTCGCAGGACTTATCCCACTGTTGAAATACCTCCATGGCCGGTACTTGAAGAGCTTACAACGTCGGAGTTTTTTTCTCCGGTGATGAATAGTCCAGATTGTAGCATGCTTGAAGCTTTGGCGGGGTTGCAGCGTTATTTGCCGTCTAACGAACCGGATCCGGAGTCATACCCGGATCTATTGGGTCCGGATTCACCAATCGATGCTTACTCATGCGACCATTTCCGTATGTACGATTTCAAAGTCAGGAGGTGTGCTCGTGGCCGGAGTCATGATTGGACGGAGTGTCCGTACGCTCATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGGAAGTACCATTACTCTGGTACGGCTTGTCCTGATTTTCGTAAAGGTGGCTGCAAGAAAGGTGACTCTTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACTCAGCCGTGTAAAGACGGTGGTAACTGTCTCCGGAAAATTTGTTTCTTTGCTCATTCACCGGATCAGCTTAGGTTTTTACATACTCGGAGCCCTGACAGAGTTGATTCTTTTGACGTTTCGTCTCCGATTCGTGCTAGAGCATTTCAGCTGTCGATTTCTCCGGTTTCTGGTTCGCCACCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAGTCACTGAGTCGATCTCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAATTTACAGTTTAATTCGGTAAAATCATTTCCTCGTAACAATCCTTTATTCGGATTCGGGTCGCCCCGTGGATCGATCTTGGGTCCTGGGTTTCAGTCTCTGCCTACAACACCGACCCGACCAGGGAATCTGGATATTTGGGAGTATGGTTTGGAGGAAGAACCCGTAATGGAGCGTGTCGTTGAGTCGGGTCGTGAGCTACGAGAAAAGATGCGCGAGAAACTGCACAAGGAGAATTGCATGGATCGAGTTGCCCAGGATCCGGATCAGAATTTGGGTGAGGCTCCTGATGTCGGGTGGGTATCTGACCTGCTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006417 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0017148 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032870 GO:0034248 GO:0034249 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044464 GO:0045935 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

356

Amino Acids

40.26

Weight (kDa)

6.17

Isoelectric Point (pI)

67.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 79 - 112 1.2e-20 AtC3H23-like, CCCH zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 735
AccII CGCG 1 cut(s) 966
AccIII TCCGGA 4 cut(s) 175, 202, 501, 1012
AciI CCGC 1 cut(s) 137
AcoI YGGCCR 2 cut(s) 53, 277
AcsI RAATTY 3 cut(s) 507, 751, 1021
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 6 cut(s) 60, 248, 308, 353, 367, 469
AfiI CCNNNNNNNGG 5 cut(s) 638, 800, 873, 1012, 1043
AgsI TTSAA 4 cut(s) 41, 65, 128, 256
AhdI GACNNNNNGTC 3 cut(s) 300, 589, 673
AjnI CCWGG 3 cut(s) 835, 871, 1005
AluBI AGCT 8 cut(s) 70, 131, 329, 458, 538, 619, 665, 949
AluI AGCT 8 cut(s) 70, 131, 329, 458, 538, 619, 665, 949
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 3 cut(s) 503, 597, 852
AlwNI CAGNNNCTG 2 cut(s) 697, 850
Ama87I CYCGRG 1 cut(s) 710
Aor13HI TCCGGA 4 cut(s) 175, 202, 501, 1012
AoxI GGCC 2 cut(s) 53, 277
ApeKI GCWGC 2 cut(s) 145, 396
ApoI RAATTY 3 cut(s) 507, 751, 1021
AspLEI GCGC 1 cut(s) 966
AspS9I GGNCC 2 cut(s) 200, 833
AsuC2I CCSGG 2 cut(s) 188, 318
AsuHPI GGTGA 5 cut(s) 109, 201, 419, 519, 1040
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 2 cut(s) 200, 833
BamHI GGATCC 2 cut(s) 172, 1009
BanII GRGCYC 1 cut(s) 563
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 157, 383
BceAI ACGGC 3 cut(s) 142, 384, 460
BciT130I CCWGG 3 cut(s) 837, 873, 1007
BcnI CCSGG 2 cut(s) 188, 318
BcoDI GTCTC 3 cut(s) 503, 597, 852
BfaI CTAG 1 cut(s) 606
BisI GCNGC 2 cut(s) 146, 397
BlsI GCNGC 2 cut(s) 147, 398
Bme1390I CCNGG 5 cut(s) 188, 318, 837, 873, 1007
Bme18I GGWCC 2 cut(s) 200, 833
BmeRI GACNNNNNGTC 3 cut(s) 300, 589, 673
BmeT110I CYCGRG 1 cut(s) 710
BmgT120I GGNCC 2 cut(s) 200, 833
BmiI GGNNCC 6 cut(s) 174, 201, 560, 834, 1011, 1035
BmrFI CCNGG 5 cut(s) 188, 318, 837, 873, 1007
BmsI GCATC 2 cut(s) 208, 951
BpiI GAAGAC 1 cut(s) 669
BplI GAGNNNNNCTC 4 cut(s) 256, 288, 691, 723
Bpu10I CCTNAGC 1 cut(s) 539
BpuMI CCSGG 2 cut(s) 188, 318
Bsa29I ATCGAT 2 cut(s) 216, 824
BsaBI GATNNNNATC 1 cut(s) 1014
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 6 cut(s) 50, 344, 817, 836, 872, 1005
BsaWI WCCGGW 8 cut(s) 94, 169, 175, 202, 501, 529, 631, 1012
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 5 cut(s) 638, 800, 873, 1012, 1043
Bse118I RCCGGY 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 1014
BseAI TCCGGA 4 cut(s) 175, 202, 501, 1012
BseBI CCWGG 3 cut(s) 837, 873, 1007
BseCI ATCGAT 2 cut(s) 216, 824
BseDI CCNNGG 6 cut(s) 50, 344, 817, 836, 872, 1005
BseGI GGATG 2 cut(s) 313, 451
BseJI GATNNNNATC 1 cut(s) 1014
BseLI CCNNNNNNNGG 5 cut(s) 638, 800, 873, 1012, 1043
BseMII CTCAG 3 cut(s) 485, 689, 704
BseXI GCAGC 2 cut(s) 157, 383
BsgI GTGCAG 1 cut(s) 959
Bsh1236I CGCG 1 cut(s) 966
BshFI GGCC 2 cut(s) 55, 279
BshVI ATCGAT 2 cut(s) 216, 824
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 710
BsiWI CGTACG 1 cut(s) 306
BslI CCNNNNNNNGG 5 cut(s) 638, 800, 873, 1012, 1043
BsmAI GTCTC 3 cut(s) 503, 597, 852
BsmBI CGTCTC 1 cut(s) 597
BsnI GGCC 2 cut(s) 55, 279
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 2 cut(s) 274, 563
Bsp13I TCCGGA 4 cut(s) 175, 202, 501, 1012
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 1 cut(s) 137
BspANI GGCC 2 cut(s) 55, 279
BspCNI CTCAG 3 cut(s) 484, 690, 703
BspDI ATCGAT 2 cut(s) 216, 824
BspEI TCCGGA 4 cut(s) 175, 202, 501, 1012
BspFNI CGCG 1 cut(s) 966
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 6 cut(s) 174, 201, 560, 834, 1011, 1035
BspQI GCTCTTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 6 cut(s) 50, 344, 817, 836, 872, 1005
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 837, 873, 1007
Bst4CI ACNGT 5 cut(s) 37, 467, 488, 497, 759
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 732
BstC8I GCNNGC 2 cut(s) 122, 331
BstDEI CTNAG 4 cut(s) 471, 539, 690, 698
BstDSI CCRYGG 2 cut(s) 50, 817
BstF5I GGATG 2 cut(s) 313, 451
BstFNI CGCG 1 cut(s) 966
BstHHI GCGC 1 cut(s) 966
BstMAI GTCTC 3 cut(s) 503, 597, 852
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 3 cut(s) 837, 873, 1007
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 5 cut(s) 186, 316, 835, 871, 1005
BstUI CGCG 1 cut(s) 966
BstV1I GCAGC 2 cut(s) 157, 383
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 4 cut(s) 172, 190, 340, 1009
BstXI CCANNNNNNTGG 1 cut(s) 362
BstYI RGATCY 4 cut(s) 172, 190, 340, 1009
Bsu15I ATCGAT 2 cut(s) 216, 824
BsuRI GGCC 2 cut(s) 55, 279
BsuTUI ATCGAT 2 cut(s) 216, 824
BtgI CCRYGG 2 cut(s) 50, 817
BtsCI GGATG 2 cut(s) 313, 451
BtsIMutI CAGTG 2 cut(s) 33, 695
Cac8I GCNNGC 2 cut(s) 122, 331
CaiI CAGNNNCTG 2 cut(s) 697, 850
CciI TCATGA 1 cut(s) 286
CfoI GCGC 1 cut(s) 966
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 200, 833
ClaI ATCGAT 2 cut(s) 216, 824
Csp6I GTAC 6 cut(s) 59, 247, 307, 352, 366, 468
CviAII CATG 7 cut(s) 51, 121, 228, 287, 428, 991, 1066
CviQI GTAC 6 cut(s) 59, 247, 307, 352, 366, 468
DdeI CTNAG 4 cut(s) 471, 539, 690, 698
DriI GACNNNNNGTC 3 cut(s) 300, 589, 673
EaeI YGGCCR 2 cut(s) 53, 277
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 3 cut(s) 300, 589, 673
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 563
Eco47I GGWCC 2 cut(s) 200, 833
Eco88I CYCGRG 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 833
EcoRII CCWGG 3 cut(s) 835, 871, 1005
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 50
Esp3I CGTCTC 1 cut(s) 597
FaeI CATG 7 cut(s) 54, 124, 231, 290, 431, 994, 1069
FatI CATG 7 cut(s) 50, 120, 227, 286, 427, 990, 1065
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 146, 397
FokI GGATG 2 cut(s) 300, 438
FriOI GRGCYC 1 cut(s) 563
Fsp4HI GCNGC 2 cut(s) 146, 397
FspBI CTAG 1 cut(s) 606
GlaI GCGC 1 cut(s) 965
GluI GCNGC 2 cut(s) 146, 397
HaeIII GGCC 2 cut(s) 55, 279
HhaI GCGC 1 cut(s) 966
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 7 cut(s) 54, 124, 231, 290, 431, 994, 1069
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HindIII AAGCTT 1 cut(s) 129
HphI GGTGA 5 cut(s) 109, 201, 419, 519, 1040
Hpy99I CGWCG 3 cut(s) 82, 734, 737
HpyAV CCTTC 1 cut(s) 750
HpyCH4III ACNGT 5 cut(s) 37, 467, 488, 497, 759
HpyCH4IV ACGT 3 cut(s) 77, 585, 732
HpyCH4V TGCA 4 cut(s) 145, 399, 976, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 4 cut(s) 471, 539, 690, 698
HpySE526I ACGT 3 cut(s) 77, 585, 732
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 7 cut(s) 54, 124, 231, 290, 431, 994, 1069
HspAI GCGC 1 cut(s) 964
Kpn2I TCCGGA 4 cut(s) 175, 202, 501, 1012
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 3 cut(s) 558, 922, 1039
Lsp1109I GCAGC 2 cut(s) 157, 383
LweI GCATC 2 cut(s) 208, 951
MaeI CTAG 1 cut(s) 606
MaeII ACGT 3 cut(s) 77, 585, 732
MaeIII GTNAC 5 cut(s) 407, 461, 491, 693, 785
MboII GAAGA 3 cut(s) 77, 669, 920
MflI RGATCY 4 cut(s) 172, 190, 340, 1009
MhlI GDGCHC 2 cut(s) 274, 563
MluCI AATT 5 cut(s) 507, 751, 763, 985, 1021
MlyI GAGTC 9 cut(s) 188, 292, 404, 662, 664, 682, 683, 709, 944
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 6 cut(s) 57, 258, 339, 792, 898, 1024
MroI TCCGGA 4 cut(s) 175, 202, 501, 1012
MseI TTAA 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 619
MspR9I CCNGG 5 cut(s) 188, 318, 837, 873, 1007
MvaI CCWGG 3 cut(s) 837, 873, 1007
MvnI CGCG 1 cut(s) 966
MwoI GCNNNNNNNGC 1 cut(s) 154
NciI CCSGG 2 cut(s) 188, 318
NcoI CCATGG 1 cut(s) 50
NlaIII CATG 7 cut(s) 54, 124, 231, 290, 431, 994, 1069
NlaIV GGNNCC 6 cut(s) 174, 201, 560, 834, 1011, 1035
NmuCI GTSAC 2 cut(s) 407, 693
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 2 cut(s) 302, 949
PfeI GAWTC 5 cut(s) 206, 575, 598, 804, 877
Pfl23II CGTACG 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 691
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 2 cut(s) 147, 398
PleI GAGTC 9 cut(s) 187, 291, 404, 662, 663, 682, 682, 708, 943
PpsI GAGTC 9 cut(s) 187, 291, 404, 662, 663, 682, 682, 708, 943
PpuMI RGGWCCY 1 cut(s) 833
Psp5II RGGWCCY 1 cut(s) 833
Psp6I CCWGG 3 cut(s) 835, 871, 1005
PspGI CCWGG 3 cut(s) 835, 871, 1005
PspLI CGTACG 1 cut(s) 306
PspN4I GGNNCC 6 cut(s) 174, 201, 560, 834, 1011, 1035
PspPI GGNCC 2 cut(s) 200, 833
PspPPI RGGWCCY 1 cut(s) 833
PstNI CAGNNNCTG 2 cut(s) 697, 850
PsuI RGATCY 4 cut(s) 172, 190, 340, 1009
PsyI GACNNNGTC 1 cut(s) 691
PvuII CAGCTG 1 cut(s) 619
RsaI GTAC 6 cut(s) 60, 248, 308, 353, 367, 469
RsaNI GTAC 6 cut(s) 59, 247, 307, 352, 366, 468
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 762
SatI GCNGC 2 cut(s) 146, 397
Sau96I GGNCC 2 cut(s) 200, 833
SchI GAGTC 9 cut(s) 188, 292, 404, 662, 664, 682, 683, 709, 944
ScrFI CCNGG 5 cut(s) 188, 318, 837, 873, 1007
SduI GDGCHC 2 cut(s) 274, 563
SfaNI GCATC 2 cut(s) 208, 951
SinI GGWCC 2 cut(s) 200, 833
SphI GCATGC 1 cut(s) 124
Sse9I AATT 5 cut(s) 507, 751, 763, 985, 1021
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 606
StyD4I CCNGG 5 cut(s) 186, 316, 835, 871, 1005
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 5 cut(s) 37, 467, 488, 497, 759
TaiI ACGT 3 cut(s) 80, 588, 735
TaqI TCGA 7 cut(s) 216, 438, 623, 703, 722, 824, 997
TasI AATT 5 cut(s) 507, 751, 763, 985, 1021
TfiI GAWTC 5 cut(s) 206, 575, 598, 804, 877
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 2 cut(s) 40, 702
TseFI GTSAC 2 cut(s) 407, 693
TseI GCWGC 2 cut(s) 145, 396
Tsp45I GTSAC 2 cut(s) 407, 693
TspDTI ATGAA 2 cut(s) 116, 440
TspGWI ACGGA 3 cut(s) 230, 294, 311
TspRI CASTG 2 cut(s) 40, 702
Tth111I GACNNNGTC 1 cut(s) 691
VpaK11BI GGWCC 2 cut(s) 200, 833
XapI RAATTY 3 cut(s) 507, 751, 1021
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 606
ZraI GACGTC 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.