Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003417

Physical Location & Seq

Genomic Coordinates Forward (+)

16027003 .. 16028196

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1201300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGATGCTCGGAGAACCGCACCGTCCCAATCCAACGGTCCACATCCCTCCGTGGTTCCTACACGACGATTCCACGGCCGAGGTGTACTCACCGTTTCCCCTGAGCGGCGTCTCTGTTAGCTCCGACGGCAATGCAAACGGCGCCGACTTCAACGGCCCGTACTACCTCCACGAAGCCCTAACGACGCTCCAGCGCTACTTGCCTTCCAACGAGATCGACCCGGACTCCGACTCAGATATTTCCGGCCGCGAATCGGACGCGCCGGTCGACGCCTACTCCTGCGACCACTTCAGGATGTTTGAGTTCAAGGTCAGGAGGTGCGCACGTGGGCGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCGGGGGAGAAGGCCAGGCGCCGCGACCCGAGGAAGTATCACTATTCGGGTACGGCCTGCCCCGATTTCCGAAAGGGTCATTGCAAGAAGGGCGATGCGTGCGAGTTTGCGCACGGGGTTTTCGAGTGCTGGCTTCACCCGTCTCGCTACCGTACTCAACCGTGCAAGGACGGCACCAGCTGCAAGCGGAGGGTTTGTTTCTTTGCTCACACGCCCGAGCAGCTTAGGGTTTTGCCTCAGCAGAGCCCCAGAGGCGGAGGCAACTCCCTCAACTCGGCCGAGTCGTATGACGGGTCGCCGCTGAGGCAGGCGATGGAGGCCGCTGCTGCTTCGTGTGTGAAAACTATGCCTTTCGTGTCCTCCCCGCCGCAACAGTCGCCGGAGGTGTCGCCGCCGGTATCTCCGATGAGCCGGTCTCTTGGGTCGGGCTCTATTAACGAAATGGTAGCTTCGCTTAGGAACTTGCAGCTCGGAAAGGTCAAGTCTTTTCCCTCTTCTCGGAATGTTCAGATGGGGGGATCTTCTGGGTTTGGGTCTCCAGTATCTCCGGGGTTCGGGTCACCACGCGGGTCCATGCTCCGACCCGGATTCTCCAGCCTGCCTTCAACACCGACCCGGGTCCCGCCCCGTTCCGGAATCAGTTATTTGGATTTCTACGAGGAGAGTTGTGAGGAGGAGCCTGCAATGGAGAGGGTGGAGTCTGGAAGGGGGCTGAGAGCCAAGATGTTTGAGAAGCTGAGGGAGGAGAATTCATTGGGCCGGGTCGACCCGGGTCCGAATTGTTCGGGTGCTCCGGATGTTGGGTGGGTTTCTGAGCTGGTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

398

Amino Acids

43.62

Weight (kDa)

6.86

Isoelectric Point (pI)

73.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_AtC3H23	PF25512	96 - 129	1e-20	AtC3H23-like, CCCH zinc finger
zf-CCCH	PF00642	140 - 161	1e-05	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19810 AT4G29190
fragaria_vesca	FvH4_1g06640 FvH4_2g32360
malus_domestica	MD02G1069500.v1.1 MD02G1304100.v1.1 MD08G1075000.v1.1 MD15G1062500.v1.1 MD15G1201300.v1.1
prunus_persica	Prupe.1G416500_v2.0.a1 Prupe.7G216200_v2.0.a1
pyrus_communis	pycom02g05500 pycom08g06180 pycom15g05920 pycom15g17880
rosa_chinensis	RchiOBHm_Chr2g0092381 RchiOBHm_Chr6g0310331
rosa_laevigata	RLG00000010491 RLG00000016304
rosa_multiflora	Rmu_co8369329.1_g000001 Rmu_sc0001195.1_g000002 Rmu_sc0002348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149180 Rroxscaffold_7G00158660
rosa_rugosa	Rorug02G0025600 Rorug06G0379100
rosa_samantha	Rh2AG071400 Rh2BG071100 Rh2CG072500 Rh2DG069800 Rh6AG493300 Rh6BG502900 Rh6CG507900 Rh6DG494000
rosa_wichuraiana	Rw2G006100 Rw6G042920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
Acc16I	TGCGCA	2 cut(s)	322, 477
AccB1I	GGYRCC	3 cut(s)	140, 384, 539
AccBSI	CCGCTC	1 cut(s)	105
AccI	GTMKAC	2 cut(s)	267, 1131
AccII	CGCG	4 cut(s)	249, 260, 390, 933
AccIII	TCCGGA	2 cut(s)	998, 1159
AclWI	GGATC	1 cut(s)	892
AcoI	YGGCCR	3 cut(s)	75, 244, 642
AcsI	RAATTY	1 cut(s)	1114
AcuI	CTGAAG	1 cut(s)	274
AcvI	CACGTG	1 cut(s)	326
AcyI	GRCGYC	4 cut(s)	108, 141, 270, 385
AfaI	GTAC	5 cut(s)	86, 161, 359, 418, 520
AfeI	AGCGCT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	151, 307, 972
AhdI	GACNNNNNGTC	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	7 cut(s)	120, 546, 589, 815, 835, 1102, 1183
AluI	AGCT	7 cut(s)	120, 546, 589, 815, 835, 1102, 1183
Alw21I	GWGCWC	1 cut(s)	1159
Alw26I	GTCTC	4 cut(s)	115, 513, 786, 906
AlwI	GGATC	1 cut(s)	892
Ama87I	CYCGRG	5 cut(s)	367, 394, 581, 981, 1135
Aor13HI	TCCGGA	2 cut(s)	998, 1159
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	8 cut(s)	75, 154, 244, 378, 420, 642, 684, 1123
ApeKI	GCWGC	5 cut(s)	546, 586, 689, 692, 832
ApoI	RAATTY	1 cut(s)	1114
AspLEI	GCGC	6 cut(s)	143, 195, 262, 323, 387, 478
AspS9I	GGNCC	7 cut(s)	37, 155, 345, 936, 985, 1123, 1139
AsuHPI	GGTGA	3 cut(s)	81, 494, 918
AvaI	CYCGRG	5 cut(s)	367, 394, 581, 981, 1135
AvaII	GGWCC	5 cut(s)	37, 345, 936, 985, 1139
BanI	GGYRCC	3 cut(s)	140, 384, 539
BanII	GRGCYC	2 cut(s)	614, 797
BbrPI	CACGTG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	1159
BbvCI	CCTCAGC	3 cut(s)	603, 668, 1103
BbvI	GCAGC	5 cut(s)	533, 598, 676, 679, 844
BccI	CCATC	2 cut(s)	673, 871
BceAI	ACGGC	6 cut(s)	90, 142, 154, 169, 435, 553
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	1 cut(s)	382
BcoDI	GTCTC	4 cut(s)	115, 513, 786, 906
BfoI	RGCGCY	3 cut(s)	144, 196, 388
BglI	GCCNNNNNGGC	2 cut(s)	618, 670
Bme18I	GGWCC	5 cut(s)	37, 345, 936, 985, 1139
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmeT110I	CYCGRG	5 cut(s)	367, 394, 581, 981, 1135
BmgT120I	GGNCC	7 cut(s)	37, 155, 345, 936, 985, 1123, 1139
BmiI	GGNNCC	9 cut(s)	56, 142, 386, 541, 937, 986, 987, 1044, 1140
BmsI	GCATC	1 cut(s)	451
BoxI	GACNNNNGTC	2 cut(s)	983, 1137
BplI	GAGNNNNNCTC	4 cut(s)	71, 103, 766, 798
BpmI	CTGGAG	3 cut(s)	173, 888, 943
Bpu10I	CCTNAGC	6 cut(s)	101, 590, 603, 668, 821, 1103
BsaAI	YACGTR	1 cut(s)	326
BsaHI	GRCGYC	4 cut(s)	108, 141, 270, 385
BsaI	GGTCTC	2 cut(s)	786, 906
BsaJI	CCNNGG	9 cut(s)	50, 72, 78, 367, 368, 395, 914, 981, 1135
BsaWI	WCCGGW	2 cut(s)	998, 1159
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 260, 290, 547, 577
Bse118I	RCCGGY	3 cut(s)	262, 760, 777
Bse1I	ACTGG	2 cut(s)	347, 905
Bse3DI	GCAATG	3 cut(s)	136, 445, 1056
BseAI	TCCGGA	2 cut(s)	998, 1159
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	9 cut(s)	50, 72, 78, 367, 368, 395, 914, 981, 1135
BseGI	GGATG	3 cut(s)	42, 300, 1168
BseMI	GCAATG	3 cut(s)	136, 445, 1056
BseMII	CTCAG	7 cut(s)	92, 246, 617, 659, 1070, 1094, 1170
BseNI	ACTGG	2 cut(s)	347, 905
BseRI	GAGGAG	4 cut(s)	1040, 1052, 1055, 1124
BseX3I	CGGCCG	3 cut(s)	75, 244, 642
BseXI	GCAGC	5 cut(s)	533, 598, 676, 679, 844
Bsh1236I	CGCG	4 cut(s)	249, 260, 390, 933
Bsh1285I	CGRYCG	4 cut(s)	78, 247, 267, 645
BshFI	GGCC	8 cut(s)	77, 156, 246, 380, 422, 644, 686, 1125
BshNI	GGYRCC	3 cut(s)	140, 384, 539
BsiEI	CGRYCG	4 cut(s)	78, 247, 267, 645
BsiHKAI	GWGCWC	1 cut(s)	1159
BsiHKCI	CYCGRG	5 cut(s)	367, 394, 581, 981, 1135
BsiWI	CGTACG	1 cut(s)	357
BslFI	GGGAC	2 cut(s)	9, 971
BsmAI	GTCTC	4 cut(s)	115, 513, 786, 906
BsmBI	CGTCTC	2 cut(s)	115, 513
BsmFI	GGGAC	2 cut(s)	9, 971
BsnI	GGCC	8 cut(s)	77, 156, 246, 380, 422, 644, 686, 1125
Bso31I	GGTCTC	2 cut(s)	786, 906
BsoBI	CYCGRG	5 cut(s)	367, 394, 581, 981, 1135
Bsp1286I	GDGCHC	3 cut(s)	614, 797, 1159
Bsp13I	TCCGGA	2 cut(s)	998, 1159
Bsp143I	GATC	2 cut(s)	213, 884
BspANI	GGCC	8 cut(s)	77, 156, 246, 380, 422, 644, 686, 1125
BspCNI	CTCAG	7 cut(s)	93, 245, 616, 660, 1071, 1095, 1171
BspEI	TCCGGA	2 cut(s)	998, 1159
BspFNI	CGCG	4 cut(s)	249, 260, 390, 933
BspLI	GGNNCC	9 cut(s)	56, 142, 386, 541, 937, 986, 987, 1044, 1140
BspPI	GGATC	1 cut(s)	892
BspT107I	GGYRCC	3 cut(s)	140, 384, 539
BspTNI	GGTCTC	2 cut(s)	786, 906
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	3 cut(s)	136, 445, 1056
BsrFI	RCCGGY	3 cut(s)	262, 760, 777
BsrI	ACTGG	2 cut(s)	347, 905
BssAI	RCCGGY	3 cut(s)	262, 760, 777
BssECI	CCNNGG	9 cut(s)	50, 72, 78, 367, 368, 395, 914, 981, 1135
BssMI	GATC	2 cut(s)	213, 884
BssNI	GRCGYC	4 cut(s)	108, 141, 270, 385
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	6 cut(s)	23, 37, 93, 518, 528, 741
Bst6I	CTCTTC	1 cut(s)	865
BstACI	GRCGYC	4 cut(s)	108, 141, 270, 385
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	7 cut(s)	424, 466, 497, 551, 675, 965, 1047
BstDEI	CTNAG	9 cut(s)	101, 232, 590, 603, 668, 821, 1079, 1103, 1179
BstDSI	CCRYGG	2 cut(s)	50, 72
BstEII	GGTNACC	1 cut(s)	924
BstF5I	GGATG	3 cut(s)	42, 300, 1168
BstFNI	CGCG	4 cut(s)	249, 260, 390, 933
BstH2I	RGCGCY	3 cut(s)	144, 196, 388
BstHHI	GCGC	6 cut(s)	143, 195, 262, 323, 387, 478
BstKTI	GATC	2 cut(s)	216, 887
BstMAI	GTCTC	4 cut(s)	115, 513, 786, 906
BstMBI	GATC	2 cut(s)	213, 884
BstMCI	CGRYCG	4 cut(s)	78, 247, 267, 645
BstNI	CCWGG	1 cut(s)	382
BstPAI	GACNNNNGTC	2 cut(s)	983, 1137
BstPI	GGTNACC	1 cut(s)	924
BstUI	CGCG	4 cut(s)	249, 260, 390, 933
BstV1I	GCAGC	5 cut(s)	533, 598, 676, 679, 844
BstX2I	RGATCY	1 cut(s)	884
BstYI	RGATCY	1 cut(s)	884
BstZI	CGGCCG	3 cut(s)	75, 244, 642
BsuRI	GGCC	8 cut(s)	77, 156, 246, 380, 422, 644, 686, 1125
BtgI	CCRYGG	2 cut(s)	50, 72
BtgZI	GCGATG	2 cut(s)	474, 692
BtsCI	GGATG	3 cut(s)	42, 300, 1168
Cac8I	GCNNGC	7 cut(s)	424, 466, 497, 551, 675, 965, 1047
CfoI	GCGC	6 cut(s)	143, 195, 262, 323, 387, 478
Cfr10I	RCCGGY	3 cut(s)	262, 760, 777
Cfr13I	GGNCC	7 cut(s)	37, 155, 345, 936, 985, 1123, 1139
Cfr9I	CCCGGG	3 cut(s)	367, 981, 1135
CseI	GACGC	4 cut(s)	97, 193, 266, 278
Csp6I	GTAC	5 cut(s)	85, 160, 358, 417, 519
CviAII	CATG	2 cut(s)	338, 940
CviQI	GTAC	5 cut(s)	85, 160, 358, 417, 519
DdeI	CTNAG	9 cut(s)	101, 232, 590, 603, 668, 821, 1079, 1103, 1179
DinI	GGCGCC	2 cut(s)	142, 386
DpnI	GATC	2 cut(s)	215, 886
DpnII	GATC	2 cut(s)	213, 884
DrdI	GACNNNNNNGTC	1 cut(s)	263
DriI	GACNNNNNGTC	1 cut(s)	351
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	3 cut(s)	75, 244, 642
EagI	CGGCCG	3 cut(s)	75, 244, 642
Eam1104I	CTCTTC	1 cut(s)	865
Eam1105I	GACNNNNNGTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	865
EciI	GGCGGA	1 cut(s)	636
EclXI	CGGCCG	3 cut(s)	75, 244, 642
Eco24I	GRGCYC	2 cut(s)	614, 797
Eco31I	GGTCTC	2 cut(s)	786, 906
Eco47I	GGWCC	5 cut(s)	37, 345, 936, 985, 1139
Eco47III	AGCGCT	1 cut(s)	194
Eco52I	CGGCCG	3 cut(s)	75, 244, 642
Eco57I	CTGAAG	1 cut(s)	274
Eco72I	CACGTG	1 cut(s)	326
Eco88I	CYCGRG	5 cut(s)	367, 394, 581, 981, 1135
Eco91I	GGTNACC	1 cut(s)	924
EcoO109I	RGGNCCY	1 cut(s)	985
EcoO65I	GGTNACC	1 cut(s)	924
EcoRI	GAATTC	1 cut(s)	1114
EcoRII	CCWGG	1 cut(s)	380
EcoT38I	GRGCYC	2 cut(s)	614, 797
EgeI	GGCGCC	2 cut(s)	142, 386
EheI	GGCGCC	2 cut(s)	142, 386
Esp3I	CGTCTC	2 cut(s)	115, 513
FaeI	CATG	2 cut(s)	341, 943
FaiI	YATR	4 cut(s)	339, 654, 713, 941
FaqI	GGGAC	2 cut(s)	9, 971
FatI	CATG	2 cut(s)	337, 939
FauI	CCCGC	3 cut(s)	738, 926, 996
FblI	GTMKAC	2 cut(s)	267, 1131
FokI	GGATG	3 cut(s)	29, 307, 1175
FriOI	GRGCYC	2 cut(s)	614, 797
FspAI	RTGCGCAY	1 cut(s)	322
FspI	TGCGCA	2 cut(s)	322, 477
GlaI	GCGC	6 cut(s)	142, 194, 261, 322, 386, 477
GsuI	CTGGAG	3 cut(s)	173, 888, 943
HaeII	RGCGCY	3 cut(s)	144, 196, 388
HaeIII	GGCC	8 cut(s)	77, 156, 246, 380, 422, 644, 686, 1125
HgaI	GACGC	4 cut(s)	97, 193, 266, 278
HhaI	GCGC	6 cut(s)	143, 195, 262, 323, 387, 478
Hin1I	GRCGYC	4 cut(s)	108, 141, 270, 385
Hin1II	CATG	2 cut(s)	341, 943
Hin6I	GCGC	6 cut(s)	141, 193, 260, 321, 385, 476
HinP1I	GCGC	6 cut(s)	141, 193, 260, 321, 385, 476
HincII	GTYRAC	2 cut(s)	268, 1132
HindII	GTYRAC	2 cut(s)	268, 1132
HinfI	GANTC	8 cut(s)	68, 224, 230, 251, 647, 954, 1002, 1064
HphI	GGTGA	3 cut(s)	81, 494, 918
Hpy166II	GTNNAC	4 cut(s)	40, 85, 268, 1132
Hpy188III	TCNNGA	5 cut(s)	292, 313, 999, 1068, 1160
Hpy8I	GTNNAC	4 cut(s)	40, 85, 268, 1132
Hpy99I	CGWCG	4 cut(s)	68, 128, 187, 272
HpyAV	CCTTC	5 cut(s)	213, 370, 448, 978, 1065
HpyCH4III	ACNGT	6 cut(s)	23, 37, 93, 518, 528, 741
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	6 cut(s)	134, 450, 531, 549, 832, 1049
HpyF3I	CTNAG	9 cut(s)	101, 232, 590, 603, 668, 821, 1079, 1103, 1179
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	4 cut(s)	108, 141, 270, 385
Hsp92II	CATG	2 cut(s)	341, 943
HspAI	GCGC	6 cut(s)	141, 193, 260, 321, 385, 476
KasI	GGCGCC	2 cut(s)	140, 384
KflI	GGGWCCC	1 cut(s)	985
Kpn2I	TCCGGA	2 cut(s)	998, 1159
Kzo9I	GATC	2 cut(s)	213, 884
LmnI	GCTCC	5 cut(s)	125, 192, 948, 1042, 1162
Lsp1109I	GCAGC	5 cut(s)	533, 598, 676, 679, 844
LweI	GCATC	1 cut(s)	451
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	333, 924
MalI	GATC	2 cut(s)	215, 886
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	2 cut(s)	213, 884
MboII	GAAGA	2 cut(s)	852, 879
MflI	RGATCY	1 cut(s)	884
MhlI	GDGCHC	3 cut(s)	614, 797, 1159
MluCI	AATT	2 cut(s)	1114, 1144
Mly113I	GGCGCC	2 cut(s)	141, 385
MlyI	GAGTC	4 cut(s)	218, 224, 656, 1073
MmeI	TCCRAC	5 cut(s)	56, 147, 231, 252, 970
MroI	TCCGGA	2 cut(s)	998, 1159
MseI	TTAA	1 cut(s)	801
MspA1I	CMGCKG	3 cut(s)	546, 667, 689
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	4 cut(s)	249, 260, 390, 933
NarI	GGCGCC	2 cut(s)	141, 385
NdeII	GATC	2 cut(s)	213, 884
NlaIII	CATG	2 cut(s)	341, 943
NlaIV	GGNNCC	9 cut(s)	56, 142, 386, 541, 937, 986, 987, 1044, 1140
NmeAIII	GCCGAG	3 cut(s)	103, 620, 670
NmuCI	GTSAC	2 cut(s)	333, 924
NsbI	TGCGCA	2 cut(s)	322, 477
PcsI	WCGNNNNNNNCGW	3 cut(s)	264, 486, 647
PfeI	GAWTC	4 cut(s)	68, 251, 954, 1002
Pfl23II	CGTACG	1 cut(s)	357
PleI	GAGTC	4 cut(s)	218, 224, 655, 1072
PluTI	GGCGCC	2 cut(s)	144, 388
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
PpsI	GAGTC	4 cut(s)	218, 224, 655, 1072
Ppu21I	YACGTR	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	985
PshAI	GACNNNNGTC	2 cut(s)	983, 1137
Psp5II	RGGWCCY	1 cut(s)	985
Psp6I	CCWGG	1 cut(s)	380
PspCI	CACGTG	1 cut(s)	326
PspEI	GGTNACC	1 cut(s)	924
PspGI	CCWGG	1 cut(s)	380
PspLI	CGTACG	1 cut(s)	357
PspN4I	GGNNCC	9 cut(s)	56, 142, 386, 541, 937, 986, 987, 1044, 1140
PspPI	GGNCC	7 cut(s)	37, 155, 345, 936, 985, 1123, 1139
PspPPI	RGGWCCY	1 cut(s)	985
PsuI	RGATCY	1 cut(s)	884
PvuII	CAGCTG	1 cut(s)	546
RsaI	GTAC	5 cut(s)	86, 161, 359, 418, 520
RsaNI	GTAC	5 cut(s)	85, 160, 358, 417, 519
SalI	GTCGAC	2 cut(s)	266, 1130
SaqAI	TTAA	1 cut(s)	801
Sau3AI	GATC	2 cut(s)	213, 884
Sau96I	GGNCC	7 cut(s)	37, 155, 345, 936, 985, 1123, 1139
SchI	GAGTC	4 cut(s)	218, 224, 656, 1073
SduI	GDGCHC	3 cut(s)	614, 797, 1159
SfaNI	GCATC	1 cut(s)	451
SfoI	GGCGCC	2 cut(s)	142, 386
SinI	GGWCC	5 cut(s)	37, 345, 936, 985, 1139
SmaI	CCCGGG	3 cut(s)	369, 983, 1137
Sse9I	AATT	2 cut(s)	1114, 1144
SspDI	GGCGCC	2 cut(s)	140, 384
TaaI	ACNGT	6 cut(s)	23, 37, 93, 518, 528, 741
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	4 cut(s)	216, 267, 489, 1131
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	2 cut(s)	1114, 1144
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	7 cut(s)	108, 249, 390, 667, 689, 736, 760
TfiI	GAWTC	4 cut(s)	68, 251, 954, 1002
Tru1I	TTAA	1 cut(s)	801
Tru9I	TTAA	1 cut(s)	801
TseFI	GTSAC	2 cut(s)	333, 924
TseI	GCWGC	5 cut(s)	546, 586, 689, 692, 832
Tsp45I	GTSAC	2 cut(s)	333, 924
TspDTI	ATGAA	1 cut(s)	1107
TspGWI	ACGGA	2 cut(s)	39, 345
TspMI	CCCGGG	3 cut(s)	367, 981, 1135
VpaK11BI	GGWCC	5 cut(s)	37, 345, 936, 985, 1139
XapI	RAATTY	1 cut(s)	1114
XmaI	CCCGGG	3 cut(s)	367, 981, 1135
XmiI	GTMKAC	2 cut(s)	267, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.