MD15G1062500.v1.1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
4282244 .. 4283353
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1062500.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGATGCTCGGAGAACCGACTCGACTCCACCCGACTATCCAAGTCCCACCCTGGGACTCATTTGACGATCATACCCCCACCTCACCCTTCCTCATCCCCGTTCACTCCGTTAACTCTAACGGCAATGCCTCCAACGGAGGAGACTTCTCCCCGCTCTCTCCAGTGTTCCTCGACTCCCTCGCCGCGCTCCACCGTTACCTCCCGTCGAACGAGTCCGACTCGCTAGCGGAGGACCCGGACATGGCCATGAACCCGATCTCCTGTGACCAGTTCCGGATGTTTGAGTTCAAGGTCCGGAGGTGCGCGCGCGGAAGGTCCCACGACTGGACCGACTGTCCGTACGCCCACCCGGGCGAGAAGGCCCGGCGTCGCGACCCAAGAAAGTACCACTACTCCGGTGCTGCATGTCCTGACTTCCGCAAGGGCCACTGCCCGAAGGGTGACCTGTGCGAGTTCGCTCACGGTGTTTTCGAGTGCTGGCTTCACCCGGCTAGGTACCGGACCCAGCCATGCAAGGACGGGTTGGGCTGCAACCGCCGGGTCTGCTTCTTTGCTCACACGCCCGAACAGCTTCGGGTCCTTCCCGGGCAGAGCCCGAGAACCCAAGGGTCGGGAGCTTTCGACTCGTATCCATTTGGTTCGCCCCCCGCCTCGATCCTGATGTCCCCTCCATTATCTCCGCCGTCTGAATCGCCGCCAATGTCGCCAAACAGTCCTCAACATGGCCGTAACTCGGTGAGTGAACTCGTTGCGTCGATGCGAAACTTCAAGCTTGCTAAGATGAAAATGAACTCTCCGCCTTCATGGGGAGCCCAAATGGGATCCGGGTTCGGTCCGTCTCCAAGAGGGTCCGCCTTCCGATCCGGTTTTTGCAGCCTTCCATTGACCCCGACTCGTACAACGGGTCGGGTCGGACCGAACCCGGTTGATCTCTGGGATCAGCGTTGCGGGGAGGAGCCAGCAATGGAGAGGGTGGAGTCCGGGAGGGATCTCCGGGCAAGAATGTACGCGAGGCTGAGTAAGGAGAACTCTTTTGGCCGAGTCGCCCGTGTTGACTCTGGATCGTCGGCTCCAGATGTTGGATGGATTTCGGAGCTAGTCAGCGAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

370

Amino Acids

40.71

Weight (kDa)

8.44

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 91 - 123 6.9e-21 AtC3H23-like, CCCH zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 495
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 6 cut(s) 185, 305, 307, 309, 372, 1010
AccIII TCCGGA 2 cut(s) 273, 294
AclWI GGATC 7 cut(s) 649, 816, 829, 855, 945, 996, 1069
AcoI YGGCCR 3 cut(s) 243, 724, 1036
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 5 cut(s) 341, 386, 497, 898, 1007
AfiI CCNNNNNNNGG 8 cut(s) 52, 241, 324, 610, 722, 733, 806, 1079
AgsI TTSAA 2 cut(s) 289, 769
AhdI GACNNNNNGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 4 cut(s) 571, 617, 772, 1096
AluI AGCT 4 cut(s) 571, 617, 772, 1096
Alw26I GTCTC 2 cut(s) 135, 843
AlwI GGATC 7 cut(s) 649, 816, 829, 855, 945, 996, 1069
Ama87I CYCGRG 3 cut(s) 349, 584, 595
Aor13HI TCCGGA 2 cut(s) 273, 294
AoxI GGCC 5 cut(s) 243, 360, 424, 724, 1036
ApeKI GCWGC 3 cut(s) 401, 528, 873
Asp700I GAANNNNTTC 1 cut(s) 570
Asp718I GGTACC 1 cut(s) 495
AspLEI GCGC 4 cut(s) 187, 305, 307, 309
AsuHPI GGTGA 4 cut(s) 75, 452, 476, 748
AsuNHI GCTAGC 1 cut(s) 223
AvaI CYCGRG 3 cut(s) 349, 584, 595
AvaII GGWCC 9 cut(s) 232, 292, 315, 327, 501, 577, 833, 849, 914
BalI TGGCCA 1 cut(s) 245
BamHI GGATCC 1 cut(s) 821
BanI GGYRCC 1 cut(s) 495
BanII GRGCYC 2 cut(s) 596, 814
BbvI GCAGC 3 cut(s) 388, 515, 885
BccI CCATC 1 cut(s) 1077
BceAI ACGGC 3 cut(s) 136, 667, 711
BciT130I CCWGG 1 cut(s) 52
BciVI GTATCC 1 cut(s) 639
BcoDI GTCTC 2 cut(s) 135, 843
BfaI CTAG 3 cut(s) 224, 492, 1097
BfuI GTATCC 1 cut(s) 639
BisI GCNGC 5 cut(s) 183, 402, 529, 695, 874
BlsI GCNGC 5 cut(s) 184, 403, 530, 696, 875
Bme18I GGWCC 9 cut(s) 232, 292, 315, 327, 501, 577, 833, 849, 914
BmeRI GACNNNNNGTC 1 cut(s) 333
BmeT110I CYCGRG 3 cut(s) 349, 584, 595
BmsI GCATC 1 cut(s) 747
BmtI GCTAGC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 2 cut(s) 144, 1056
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 5 cut(s) 50, 51, 349, 584, 604
BsaWI WCCGGW 5 cut(s) 273, 294, 395, 498, 863
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 377, 407
Bsc4I CCNNNNNNNGG 8 cut(s) 52, 241, 324, 610, 722, 733, 806, 1079
Bse1I ACTGG 3 cut(s) 161, 268, 329
Bse3DI GCAATG 2 cut(s) 130, 969
BseAI TCCGGA 2 cut(s) 273, 294
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 5 cut(s) 50, 51, 349, 584, 604
BseGI GGATG 3 cut(s) 93, 282, 1088
BseLI CCNNNNNNNGG 8 cut(s) 52, 241, 324, 610, 722, 733, 806, 1079
BseMI GCAATG 2 cut(s) 130, 969
BseMII CTCAG 1 cut(s) 1007
BseNI ACTGG 3 cut(s) 161, 268, 329
BsePI GCGCGC 2 cut(s) 303, 305
BseRI GAGGAG 2 cut(s) 153, 968
BseXI GCAGC 3 cut(s) 388, 515, 885
BseYI CCCAGC 1 cut(s) 504
Bsh1236I CGCG 6 cut(s) 185, 305, 307, 309, 372, 1010
BshFI GGCC 5 cut(s) 245, 362, 426, 726, 1038
BshNI GGYRCC 1 cut(s) 495
BsiHKCI CYCGRG 3 cut(s) 349, 584, 595
BsiWI CGTACG 1 cut(s) 339
BslFI GGGAC 4 cut(s) 29, 68, 301, 649
BslI CCNNNNNNNGG 8 cut(s) 52, 241, 324, 610, 722, 733, 806, 1079
BsmAI GTCTC 2 cut(s) 135, 843
BsmBI CGTCTC 1 cut(s) 843
BsmFI GGGAC 4 cut(s) 29, 68, 301, 649
BsnI GGCC 5 cut(s) 245, 362, 426, 726, 1038
BsoBI CYCGRG 3 cut(s) 349, 584, 595
Bsp1286I GDGCHC 2 cut(s) 596, 814
Bsp13I TCCGGA 2 cut(s) 273, 294
Bsp143I GATC 9 cut(s) 67, 255, 654, 821, 860, 928, 937, 988, 1061
Bsp68I TCGCGA 1 cut(s) 372
BspANI GGCC 5 cut(s) 245, 362, 426, 726, 1038
BspCNI CTCAG 1 cut(s) 1008
BspEI TCCGGA 2 cut(s) 273, 294
BspFNI CGCG 6 cut(s) 185, 305, 307, 309, 372, 1010
BspOI GCTAGC 1 cut(s) 227
BspPI GGATC 7 cut(s) 649, 816, 829, 855, 945, 996, 1069
BspT107I GGYRCC 1 cut(s) 495
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 2 cut(s) 130, 969
BsrI ACTGG 3 cut(s) 161, 268, 329
BssECI CCNNGG 5 cut(s) 50, 51, 349, 584, 604
BssHII GCGCGC 2 cut(s) 303, 305
BssMI GATC 9 cut(s) 67, 255, 654, 821, 860, 928, 937, 988, 1061
BssNI GRCGYC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 4 cut(s) 194, 335, 464, 713
BstACI GRCGYC 1 cut(s) 367
BstC8I GCNNGC 6 cut(s) 225, 305, 307, 479, 774, 960
BstDEI CTNAG 2 cut(s) 777, 1016
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 3 cut(s) 93, 282, 1088
BstFNI CGCG 6 cut(s) 185, 305, 307, 309, 372, 1010
BstHHI GCGC 4 cut(s) 187, 305, 307, 309
BstKTI GATC 9 cut(s) 70, 258, 657, 824, 863, 931, 940, 991, 1064
BstMAI GTCTC 2 cut(s) 135, 843
BstMBI GATC 9 cut(s) 67, 255, 654, 821, 860, 928, 937, 988, 1061
BstMWI GCNNNNNNNGC 4 cut(s) 534, 543, 568, 703
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 408
BstPI GGTNACC 1 cut(s) 440
BstUI CGCG 6 cut(s) 185, 305, 307, 309, 372, 1010
BstV1I GCAGC 3 cut(s) 388, 515, 885
BstX2I RGATCY 2 cut(s) 821, 988
BstYI RGATCY 2 cut(s) 821, 988
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 5 cut(s) 245, 362, 426, 726, 1038
BtsCI GGATG 3 cut(s) 93, 282, 1088
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 2 cut(s) 168, 427
BtuMI TCGCGA 1 cut(s) 372
Cac8I GCNNGC 6 cut(s) 225, 305, 307, 479, 774, 960
CfoI GCGC 4 cut(s) 187, 305, 307, 309
Cfr9I CCCGGG 2 cut(s) 349, 584
CpoI CGGWCCG 2 cut(s) 833, 914
CseI GACGC 2 cut(s) 356, 741
Csp6I GTAC 5 cut(s) 340, 385, 496, 897, 1006
CspI CGGWCCG 2 cut(s) 833, 914
CviAII CATG 6 cut(s) 241, 247, 405, 510, 722, 804
CviQI GTAC 5 cut(s) 340, 385, 496, 897, 1006
DdeI CTNAG 2 cut(s) 777, 1016
DpnI GATC 9 cut(s) 69, 257, 656, 823, 862, 930, 939, 990, 1063
DpnII GATC 9 cut(s) 67, 255, 654, 821, 860, 928, 937, 988, 1061
DriI GACNNNNNGTC 1 cut(s) 333
EaeI YGGCCR 3 cut(s) 243, 724, 1036
Eam1105I GACNNNNNGTC 1 cut(s) 333
EciI GGCGGA 3 cut(s) 669, 786, 841
Eco130I CCWWGG 1 cut(s) 604
Eco24I GRGCYC 2 cut(s) 596, 814
Eco47I GGWCC 9 cut(s) 232, 292, 315, 327, 501, 577, 833, 849, 914
Eco88I CYCGRG 3 cut(s) 349, 584, 595
Eco91I GGTNACC 1 cut(s) 440
EcoO109I RGGNCCY 3 cut(s) 232, 315, 577
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 604
EcoT38I GRGCYC 2 cut(s) 596, 814
ErhI CCWWGG 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 843
FaeI CATG 6 cut(s) 244, 250, 408, 513, 725, 807
FaiI YATR 7 cut(s) 72, 242, 248, 406, 511, 723, 805
FaqI GGGAC 4 cut(s) 29, 68, 301, 649
FatI CATG 6 cut(s) 240, 246, 404, 509, 721, 803
FauI CCCGC 3 cut(s) 159, 655, 941
Fnu4HI GCNGC 5 cut(s) 183, 402, 529, 695, 874
FokI GGATG 3 cut(s) 80, 289, 1095
FriOI GRGCYC 2 cut(s) 596, 814
Fsp4HI GCNGC 5 cut(s) 183, 402, 529, 695, 874
FspBI CTAG 3 cut(s) 224, 492, 1097
GlaI GCGC 4 cut(s) 186, 304, 306, 308
GluI GCNGC 5 cut(s) 183, 402, 529, 695, 874
GsaI CCCAGC 1 cut(s) 508
GsuI CTGGAG 2 cut(s) 144, 1056
HaeIII GGCC 5 cut(s) 245, 362, 426, 726, 1038
HgaI GACGC 2 cut(s) 356, 741
HhaI GCGC 4 cut(s) 187, 305, 307, 309
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 6 cut(s) 244, 250, 408, 513, 725, 807
Hin6I GCGC 4 cut(s) 185, 303, 305, 307
HinP1I GCGC 4 cut(s) 185, 303, 305, 307
HincII GTYRAC 2 cut(s) 112, 1054
HindII GTYRAC 2 cut(s) 112, 1054
HindIII AAGCTT 1 cut(s) 770
HpaI GTTAAC 1 cut(s) 112
HphI GGTGA 4 cut(s) 75, 452, 476, 748
Hpy166II GTNNAC 4 cut(s) 103, 112, 743, 1054
Hpy188I TCNGA 6 cut(s) 11, 217, 688, 860, 914, 1093
Hpy188III TCNNGA 8 cut(s) 274, 295, 371, 410, 612, 658, 1059, 1073
Hpy8I GTNNAC 4 cut(s) 103, 112, 743, 1054
Hpy99I CGWCG 4 cut(s) 208, 372, 757, 1069
HpyAV CCTTC 8 cut(s) 97, 306, 352, 430, 590, 810, 865, 887
HpyCH4III ACNGT 4 cut(s) 194, 335, 464, 713
HpyCH4V TGCA 4 cut(s) 404, 513, 531, 873
HpyF10VI GCNNNNNNNGC 4 cut(s) 534, 543, 568, 703
HpyF3I CTNAG 2 cut(s) 777, 1016
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 6 cut(s) 244, 250, 408, 513, 725, 807
HspAI GCGC 4 cut(s) 185, 303, 305, 307
Kpn2I TCCGGA 2 cut(s) 273, 294
KpnI GGTACC 1 cut(s) 499
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 9 cut(s) 67, 255, 654, 821, 860, 928, 937, 988, 1061
LmnI GCTCC 6 cut(s) 192, 614, 809, 955, 1075, 1093
Lsp1109I GCAGC 3 cut(s) 388, 515, 885
LweI GCATC 1 cut(s) 747
MaeI CTAG 3 cut(s) 224, 492, 1097
MaeIII GTNAC 4 cut(s) 194, 263, 440, 728
MalI GATC 9 cut(s) 69, 257, 656, 823, 862, 930, 939, 990, 1063
MauBI CGCGCGCG 1 cut(s) 305
MbiI CCGCTC 1 cut(s) 154
MboI GATC 9 cut(s) 67, 255, 654, 821, 860, 928, 937, 988, 1061
MflI RGATCY 2 cut(s) 821, 988
MhlI GDGCHC 2 cut(s) 596, 814
MlsI TGGCCA 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 245
MmeI TCCRAC 4 cut(s) 156, 240, 892, 1060
Mox20I TGGCCA 1 cut(s) 245
MroI TCCGGA 2 cut(s) 273, 294
MroXI GAANNNNTTC 1 cut(s) 570
MscI TGGCCA 1 cut(s) 245
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 245
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 6 cut(s) 185, 305, 307, 309, 372, 1010
MwoI GCNNNNNNNGC 4 cut(s) 534, 543, 568, 703
NdeII GATC 9 cut(s) 67, 255, 654, 821, 860, 928, 937, 988, 1061
NheI GCTAGC 1 cut(s) 223
NlaIII CATG 6 cut(s) 244, 250, 408, 513, 725, 807
NmeAIII GCCGAG 1 cut(s) 1064
NmuCI GTSAC 2 cut(s) 263, 440
NruI TCGCGA 1 cut(s) 372
NspI RCATGY 1 cut(s) 408
PasI CCCWGGG 1 cut(s) 51
PauI GCGCGC 2 cut(s) 303, 305
PcsI WCGNNNNNNNCGW 2 cut(s) 327, 468
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 1 cut(s) 689
Pfl23II CGTACG 1 cut(s) 339
PflMI CCANNNNNTGG 1 cut(s) 1079
PfoI TCCNGGA 1 cut(s) 980
PkrI GCNGC 5 cut(s) 184, 403, 530, 696, 875
PpuMI RGGWCCY 3 cut(s) 232, 315, 577
Psp5II RGGWCCY 3 cut(s) 232, 315, 577
Psp6I CCWGG 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 1 cut(s) 50
PspLI CGTACG 1 cut(s) 339
PspPPI RGGWCCY 3 cut(s) 232, 315, 577
PsuI RGATCY 2 cut(s) 821, 988
PteI GCGCGC 2 cut(s) 303, 305
RruI TCGCGA 1 cut(s) 372
RsaI GTAC 5 cut(s) 341, 386, 497, 898, 1007
RsaNI GTAC 5 cut(s) 340, 385, 496, 897, 1006
RseI CAYNNNNRTG 1 cut(s) 245
Rsr2I CGGWCCG 2 cut(s) 833, 914
RsrII CGGWCCG 2 cut(s) 833, 914
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 5 cut(s) 183, 402, 529, 695, 874
Sau3AI GATC 9 cut(s) 67, 255, 654, 821, 860, 928, 937, 988, 1061
SduI GDGCHC 2 cut(s) 596, 814
SfaNI GCATC 1 cut(s) 747
SinI GGWCC 9 cut(s) 232, 292, 315, 327, 501, 577, 833, 849, 914
SmaI CCCGGG 2 cut(s) 351, 586
SmiMI CAYNNNNRTG 1 cut(s) 245
SspMI CTAG 3 cut(s) 224, 492, 1097
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 4 cut(s) 194, 335, 464, 713
TaqI TCGA 7 cut(s) 22, 171, 206, 471, 621, 653, 755
TaqII GACCGA 3 cut(s) 344, 821, 931
TauI GCSGC 2 cut(s) 185, 697
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 168, 434
TseFI GTSAC 2 cut(s) 263, 440
TseI GCWGC 3 cut(s) 401, 528, 873
Tsp45I GTSAC 2 cut(s) 263, 440
TspDTI ATGAA 4 cut(s) 263, 792, 797, 803
TspGWI ACGGA 4 cut(s) 97, 150, 327, 825
TspMI CCCGGG 2 cut(s) 349, 584
TspRI CASTG 2 cut(s) 168, 434
Van91I CCANNNNNTGG 1 cut(s) 1079
VpaK11BI GGWCC 9 cut(s) 232, 292, 315, 327, 501, 577, 833, 849, 914
XceI RCATGY 1 cut(s) 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 1080
XmaI CCCGGG 2 cut(s) 349, 584
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 3 cut(s) 224, 492, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.