Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Reverse (-)

8848130 .. 8850111

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGAGTGGATTACTACAAAGTCCTCCAAGTCGATCGCAGCGCAAGCGACGATGATCTCAAGAAAGCTTATCGTAAACTTGCCATGAAATGGCATCCCGACAAAAATCCCAACAACAAAAAGGATGCCGAAGCTATGTTCAAACAAATATCCGAAGCTTACGAGGTACTAAGTGATCCTCAGAAGAAAGCTGTGTATGATCAATATGGTGAGGAAGGTTTGAAAGGGAACGTGCCACCTCCGGATGCAGGTGGAGCTACTTACTTCTCTACCGGGGATGGTCCAACGTCCTTCAGGTTCAACCCGAGAAATGCGGATGATATATTTGCTGAGTTCTTTGGCTTCTCTAGCCCATTTGGCGGCGGAAGAGGTGGTACAAGATTCTCTAGCAGCATGTTTGGTGATAATATGTTTGCTTCTTTCGGCGAAGGAGGAGGCGGTGGTGGTGGCTCGATGCATCACGGTGGAGCTAGGAAGGCTGCTCCTATCGAAAACAAGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAAAAGATGAGGATTTCTAGGGAGATTGCTGATGTCAGTGGCAAGACGATGCAGGTGGAAGAGATTTTGACCATTGATGTGAAACCAGGATGGAAGAAAGGCACAAAGATCACGTTCCCAGAGAAAGGCAATGAGCAACCCGGTGTGATTCCAGCGGATTTAGTCTTCATAATCGACGAGAAGCCTCACCCGGTTTTCACTCGAGAGGGTAACGACCTCATAGTCACACAGAAGATCTCACTTGTTGAGGCCTTGACTGGTTACACAGTGAACCTGACTACTCTTGATGGTCGGAGACTGACAATTCCAGTCACCAACGTGGTCCATCCCGAGTACGAGGAAGTGGTACCGAAGGAAGGGATGCCATTGCAAAAAGACCAGACTAAGAGAGGTAACTTGAGGATCAAATTTAACATCAAGTTCCCTACAAGGTTAACCTCAGAGCAGAAGACAGGAGTGAAGAAACTTCTCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

337

Amino Acids

37.11

Weight (kDa)

8.81

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	2.5e-27	DnaJ domain
DnaJ_C	PF01556	163 - 321	1.4e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	239, 580
AasI	GACNNNNNNGTC	1 cut(s)	758
Acc36I	ACCTGC	2 cut(s)	239, 580
Acc65I	GGTACC	1 cut(s)	883
AccB1I	GGYRCC	1 cut(s)	883
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	5 cut(s)	314, 360, 363, 438, 692
AclWI	GGATC	2 cut(s)	170, 947
AcsI	RAATTY	1 cut(s)	944
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	4 cut(s)	168, 376, 872, 885
AfiI	CCNNNNNNNGG	5 cut(s)	90, 248, 359, 662, 893
AgsI	TTSAA	4 cut(s)	142, 223, 301, 515
AjnI	CCWGG	1 cut(s)	622
AleI	CACNNNNGTG	1 cut(s)	854
AluBI	AGCT	6 cut(s)	68, 134, 158, 191, 257, 470
AluI	AGCT	6 cut(s)	68, 134, 158, 191, 257, 470
Alw26I	GTCTC	1 cut(s)	826
AlwI	GGATC	2 cut(s)	170, 947
Ama87I	CYCGRG	3 cut(s)	304, 738, 866
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	3 cut(s)	39, 390, 479
ApoI	RAATTY	1 cut(s)	944
Asp718I	GGTACC	1 cut(s)	883
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	281, 859
AsuC2I	CCSGG	3 cut(s)	274, 678, 728
AsuHPI	GGTGA	4 cut(s)	221, 413, 716, 841
AvaI	CYCGRG	3 cut(s)	304, 738, 866
AvaII	GGWCC	2 cut(s)	281, 859
BanI	GGYRCC	1 cut(s)	883
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BbsI	GAAGAC	2 cut(s)	694, 992
BbvI	GCAGC	3 cut(s)	51, 402, 466
BccI	CCATC	4 cut(s)	272, 621, 818, 870
BciT130I	CCWGG	1 cut(s)	624
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	3 cut(s)	274, 678, 728
BcoDI	GTCTC	1 cut(s)	826
BfaI	CTAG	4 cut(s)	348, 387, 471, 555
BfuAI	ACCTGC	2 cut(s)	239, 580
BglI	GCCNNNNNGGC	1 cut(s)	357
BglII	AGATCT	2 cut(s)	517, 771
BisI	GCNGC	4 cut(s)	40, 361, 391, 480
BlsI	GCNGC	4 cut(s)	41, 362, 392, 481
Bme1390I	CCNGG	4 cut(s)	274, 624, 678, 728
Bme18I	GGWCC	2 cut(s)	281, 859
BmeT110I	CYCGRG	3 cut(s)	304, 738, 866
BmgT120I	GGNCC	2 cut(s)	281, 859
BmiI	GGNNCC	2 cut(s)	532, 885
BmrFI	CCNGG	4 cut(s)	274, 624, 678, 728
BmsI	GCATC	7 cut(s)	103, 115, 235, 444, 466, 576, 888
BpiI	GAAGAC	2 cut(s)	694, 992
BpuEI	CTTGAG	2 cut(s)	44, 955
BpuMI	CCSGG	3 cut(s)	274, 678, 728
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 248, 359, 662, 893
Bse1I	ACTGG	2 cut(s)	799, 845
Bse3DI	GCAATG	2 cut(s)	673, 902
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	8 cut(s)	94, 130, 250, 283, 322, 632, 862, 903
BseLI	CCNNNNNNNGG	5 cut(s)	90, 248, 359, 662, 893
BseMI	GCAATG	2 cut(s)	673, 902
BseMII	CTCAG	3 cut(s)	194, 321, 990
BseNI	ACTGG	2 cut(s)	799, 845
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	51, 402, 466
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	788
BshNI	GGYRCC	1 cut(s)	883
BsiEI	CGRYCG	1 cut(s)	37
BsiHKCI	CYCGRG	3 cut(s)	304, 738, 866
BsiSI	CCGG	4 cut(s)	242, 273, 678, 728
BslI	CCNNNNNNNGG	5 cut(s)	90, 248, 359, 662, 893
BsmAI	GTCTC	1 cut(s)	826
BsnI	GGCC	1 cut(s)	788
BsoBI	CYCGRG	3 cut(s)	304, 738, 866
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	8 cut(s)	34, 55, 175, 199, 517, 645, 771, 939
BspACI	CCGC	5 cut(s)	314, 360, 363, 438, 692
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	3 cut(s)	193, 322, 989
BspEI	TCCGGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	532, 885
BspMI	ACCTGC	2 cut(s)	239, 580
BspPI	GGATC	2 cut(s)	170, 947
BspT107I	GGYRCC	1 cut(s)	883
BsrDI	GCAATG	2 cut(s)	673, 902
BsrI	ACTGG	2 cut(s)	799, 845
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	8 cut(s)	34, 55, 175, 199, 517, 645, 771, 939
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	2 cut(s)	464, 805
Bst6I	CTCTTC	2 cut(s)	361, 591
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	5 cut(s)	170, 180, 330, 921, 976
BstF5I	GGATG	8 cut(s)	94, 130, 250, 283, 322, 632, 862, 903
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	8 cut(s)	37, 58, 178, 202, 520, 648, 774, 942
BstMAI	GTCTC	1 cut(s)	826
BstMBI	GATC	8 cut(s)	34, 55, 175, 199, 517, 645, 771, 939
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 254, 348, 357, 476
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	4 cut(s)	272, 622, 676, 726
BstV1I	GCAGC	3 cut(s)	51, 402, 466
BstV2I	GAAGAC	2 cut(s)	694, 992
BstX2I	RGATCY	2 cut(s)	517, 771
BstYI	RGATCY	2 cut(s)	517, 771
BsuRI	GGCC	1 cut(s)	788
BtsCI	GGATG	8 cut(s)	94, 130, 250, 283, 322, 632, 862, 903
BtsIMutI	CAGTG	2 cut(s)	580, 810
BveI	ACCTGC	2 cut(s)	239, 580
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	281, 859
Csp6I	GTAC	4 cut(s)	167, 375, 871, 884
CviAII	CATG	2 cut(s)	85, 394
CviQI	GTAC	4 cut(s)	167, 375, 871, 884
DdeI	CTNAG	5 cut(s)	170, 180, 330, 921, 976
DpnI	GATC	8 cut(s)	36, 57, 177, 201, 519, 647, 773, 941
DpnII	GATC	8 cut(s)	34, 55, 175, 199, 517, 645, 771, 939
DrdI	GACNNNNNNGTC	1 cut(s)	758
DseDI	GACNNNNNNGTC	1 cut(s)	758
Eam1104I	CTCTTC	2 cut(s)	361, 591
EarI	CTCTTC	2 cut(s)	361, 591
EciI	GGCGGA	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	788
Eco47I	GGWCC	2 cut(s)	281, 859
Eco57I	CTGAAG	1 cut(s)	277
Eco88I	CYCGRG	3 cut(s)	304, 738, 866
EcoRII	CCWGG	1 cut(s)	622
EcoT22I	ATGCAT	1 cut(s)	459
FaeI	CATG	2 cut(s)	88, 397
FaiI	YATR	9 cut(s)	86, 137, 198, 207, 323, 395, 410, 707, 758
FatI	CATG	2 cut(s)	84, 393
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	40, 361, 391, 480
FokI	GGATG	8 cut(s)	81, 137, 257, 290, 329, 639, 849, 910
Fsp4HI	GCNGC	4 cut(s)	40, 361, 391, 480
FspBI	CTAG	4 cut(s)	348, 387, 471, 555
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	40, 361, 391, 480
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	4 cut(s)	242, 273, 678, 728
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	88, 397
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	972
HindII	GTYRAC	1 cut(s)	972
HindIII	AAGCTT	2 cut(s)	66, 156
HinfI	GANTC	2 cut(s)	381, 685
HpaI	GTTAAC	1 cut(s)	972
HpaII	CCGG	4 cut(s)	242, 273, 678, 728
HphI	GGTGA	4 cut(s)	221, 413, 716, 841
Hpy166II	GTNNAC	3 cut(s)	77, 808, 972
Hpy188I	TCNGA	5 cut(s)	154, 183, 831, 979, 1010
Hpy188III	TCNNGA	6 cut(s)	61, 98, 242, 740, 821, 866
Hpy8I	GTNNAC	3 cut(s)	77, 808, 972
Hpy99I	CGWCG	2 cut(s)	53, 716
HpyAV	CCTTC	6 cut(s)	209, 301, 422, 469, 883, 887
HpyCH4III	ACNGT	2 cut(s)	464, 805
HpyCH4IV	ACGT	4 cut(s)	231, 287, 650, 855
HpyCH4V	TGCA	4 cut(s)	248, 457, 589, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 254, 348, 357, 476
HpyF3I	CTNAG	5 cut(s)	170, 180, 330, 921, 976
HpySE526I	ACGT	4 cut(s)	231, 287, 650, 855
Hsp92II	CATG	2 cut(s)	88, 397
HspAI	GCGC	1 cut(s)	42
Kpn2I	TCCGGA	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	887
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	972
Kzo9I	GATC	8 cut(s)	34, 55, 175, 199, 517, 645, 771, 939
LmnI	GCTCC	3 cut(s)	254, 467, 487
Lsp1109I	GCAGC	3 cut(s)	51, 402, 466
LweI	GCATC	7 cut(s)	103, 115, 235, 444, 466, 576, 888
MaeI	CTAG	4 cut(s)	348, 387, 471, 555
MaeII	ACGT	4 cut(s)	231, 287, 650, 855
MaeIII	GTNAC	5 cut(s)	746, 760, 797, 847, 929
MalI	GATC	8 cut(s)	36, 57, 177, 201, 519, 647, 773, 941
MboI	GATC	8 cut(s)	34, 55, 175, 199, 517, 645, 771, 939
MboII	GAAGA	9 cut(s)	196, 378, 527, 608, 643, 694, 781, 997, 1009
MflI	RGATCY	2 cut(s)	517, 771
MluCI	AATT	2 cut(s)	840, 944
MmeI	TCCRAC	2 cut(s)	308, 809
Mph1103I	ATGCAT	1 cut(s)	459
MroI	TCCGGA	1 cut(s)	241
MseI	TTAA	2 cut(s)	948, 971
MslI	CAYNNNNRTG	3 cut(s)	462, 614, 854
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	4 cut(s)	242, 273, 678, 728
MspR9I	CCNGG	4 cut(s)	274, 624, 678, 728
MvaI	CCWGG	1 cut(s)	624
MwoI	GCNNNNNNNGC	5 cut(s)	45, 254, 348, 357, 476
NciI	CCSGG	3 cut(s)	274, 678, 728
NdeII	GATC	8 cut(s)	34, 55, 175, 199, 517, 645, 771, 939
NlaIII	CATG	2 cut(s)	88, 397
NlaIV	GGNNCC	2 cut(s)	532, 885
NmuCI	GTSAC	2 cut(s)	760, 847
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	1 cut(s)	397
OliI	CACNNNNGTG	1 cut(s)	854
PaeR7I	CTCGAG	1 cut(s)	738
PaqCI	CACCTGC	2 cut(s)	239, 580
PceI	AGGCCT	1 cut(s)	788
PfeI	GAWTC	2 cut(s)	381, 685
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	4 cut(s)	41, 362, 392, 481
Ple19I	CGATCG	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	2 cut(s)	532, 885
PspPI	GGNCC	2 cut(s)	281, 859
PsuI	RGATCY	2 cut(s)	517, 771
PvuI	CGATCG	1 cut(s)	37
RsaI	GTAC	4 cut(s)	168, 376, 872, 885
RsaNI	GTAC	4 cut(s)	167, 375, 871, 884
RseI	CAYNNNNRTG	3 cut(s)	462, 614, 854
SaqAI	TTAA	2 cut(s)	948, 971
SatI	GCNGC	4 cut(s)	40, 361, 391, 480
Sau3AI	GATC	8 cut(s)	34, 55, 175, 199, 517, 645, 771, 939
Sau96I	GGNCC	2 cut(s)	281, 859
ScrFI	CCNGG	4 cut(s)	274, 624, 678, 728
SfaNI	GCATC	7 cut(s)	103, 115, 235, 444, 466, 576, 888
Sfr274I	CTCGAG	1 cut(s)	738
SinI	GGWCC	2 cut(s)	281, 859
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	3 cut(s)	462, 614, 854
SmlI	CTYRAG	3 cut(s)	59, 738, 934
SmoI	CTYRAG	3 cut(s)	59, 738, 934
Sse9I	AATT	2 cut(s)	840, 944
SseBI	AGGCCT	1 cut(s)	788
SsiI	CCGC	5 cut(s)	314, 360, 363, 438, 692
SspMI	CTAG	4 cut(s)	348, 387, 471, 555
StuI	AGGCCT	1 cut(s)	788
StyD4I	CCNGG	4 cut(s)	272, 622, 676, 726
TaaI	ACNGT	2 cut(s)	464, 805
TaiI	ACGT	4 cut(s)	234, 290, 653, 858
TaqI	TCGA	5 cut(s)	33, 452, 489, 711, 739
TasI	AATT	2 cut(s)	840, 944
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	381, 685
Tru1I	TTAA	2 cut(s)	948, 971
Tru9I	TTAA	2 cut(s)	948, 971
TscAI	CASTG	2 cut(s)	580, 810
TseFI	GTSAC	2 cut(s)	760, 847
TseI	GCWGC	3 cut(s)	39, 390, 479
Tsp45I	GTSAC	2 cut(s)	760, 847
TspDTI	ATGAA	2 cut(s)	101, 694
TspRI	CASTG	2 cut(s)	580, 810
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	281, 859
XapI	RAATTY	1 cut(s)	944
XceI	RCATGY	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	738
XspI	CTAG	4 cut(s)	348, 387, 471, 555
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.