Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Reverse (-)

29857843 .. 29859236

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0277300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAACCCGCCACCGCAGCGGCCCACAACCCCCAAAAAGGAGCTCCAAATCCAAGGCCCCCGCCCCTCCCCTCTCAGACTCAGCAAAGACTCCGTCAAAATCAAGAAGCCGCCTCCCCACCCCCACCTCCGCCAAAACCCACCTCAACAACAGTTCCAGCAGCACCAGGAGCCGGTGGTCATCTACACCGTCTCCCCCAAAGTGATTCACACCTCCGTCAACGAGTTCATGTCCCTCGTCCAACGCCTCACCGGCCCTTCCTCCTCTCCCCCCGGCGACCTCTCCCCCGCCGCCCGCCTCGCCTCCATCGAGAAAACCAGCCCCTCTTCCGATCACAAGCACTTCCCGCCCGTAAATTCCACCACAACCACCGCCGCCATTGACGACGACTTTATGGATAGTATTCTGGAGGGTATTGACTTGATGGGTCAGTTCCCGGGGATTCTGTCGCCGGCGCCGGCCACCATGCCGCCGATCCCAGCTGGGTTCTTCTCTCCGGCCGCCGAAGACCCGCAAAACTTCAACTGGCAAGGCGCCAACAACATCAACAGCGGCTTCAATAGTTTCATGCCGAGCCCTTCCTCGAATTCGGCTCTGTTTTCGGCTCCTCTGGTTTCTCCGAGCCCTTCTTCGTGGGACCTCTTCAACAGCTTCTTAGGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

221

Amino Acids

23.95

Weight (kDa)

6.58

Isoelectric Point (pI)

78.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	63 - 90	1.4e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	454, 533
AclWI	GGATC	1 cut(s)	469
AcoI	YGGCCR	2 cut(s)	459, 498
AcsI	RAATTY	2 cut(s)	355, 586
AcyI	GRCGYC	2 cut(s)	455, 534
AfiI	CCNNNNNNNGG	2 cut(s)	37, 172
AgsI	TTSAA	3 cut(s)	523, 559, 646
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	43, 482, 651
AluI	AGCT	3 cut(s)	43, 482, 651
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	5 cut(s)	20, 55, 253, 459, 498
ApeKI	GCWGC	2 cut(s)	16, 160
ApoI	RAATTY	2 cut(s)	355, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspLEI	GCGC	2 cut(s)	457, 536
AspS9I	GGNCC	4 cut(s)	21, 56, 254, 637
AsuC2I	CCSGG	3 cut(s)	273, 437, 438
AsuHPI	GGTGA	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	637
BanI	GGYRCC	2 cut(s)	454, 533
BanII	GRGCYC	3 cut(s)	45, 578, 626
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	28, 172
BccI	CCATC	2 cut(s)	314, 418
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	3 cut(s)	273, 437, 438
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	664
BfoI	RGCGCY	2 cut(s)	458, 537
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	9 cut(s)	17, 20, 110, 161, 291, 375, 470, 501, 553
BlsI	GCNGC	9 cut(s)	18, 21, 111, 162, 292, 376, 471, 502, 554
Bme1390I	CCNGG	4 cut(s)	167, 273, 437, 438
Bme18I	GGWCC	1 cut(s)	637
BmeT110I	CYCGRG	1 cut(s)	436
BmgT120I	GGNCC	4 cut(s)	21, 56, 254, 637
BmiI	GGNNCC	6 cut(s)	58, 171, 456, 535, 606, 638
BmrFI	CCNGG	4 cut(s)	167, 273, 437, 438
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	428
BpuMI	CCSGG	3 cut(s)	273, 437, 438
BsaHI	GRCGYC	2 cut(s)	455, 534
BsaJI	CCNNGG	4 cut(s)	52, 271, 436, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 172
Bse118I	RCCGGY	4 cut(s)	172, 251, 451, 457
Bse1I	ACTGG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	4 cut(s)	52, 271, 436, 437
BseLI	CCNNNNNNNGG	2 cut(s)	37, 172
BseMII	CTCAG	2 cut(s)	88, 94
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	2 cut(s)	253, 597
BseX3I	CGGCCG	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	28, 172
BseYI	CCCAGC	2 cut(s)	478, 482
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	5 cut(s)	22, 57, 255, 461, 500
BshNI	GGYRCC	2 cut(s)	454, 533
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	7 cut(s)	173, 252, 273, 437, 452, 458, 497
BslFI	GGGAC	2 cut(s)	217, 650
BslI	CCNNNNNNNGG	2 cut(s)	37, 172
BsmAI	GTCTC	1 cut(s)	196
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	217, 650
BsnI	GGCC	5 cut(s)	22, 57, 255, 461, 500
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	3 cut(s)	45, 578, 626
Bsp143I	GATC	2 cut(s)	331, 474
BspANI	GGCC	5 cut(s)	22, 57, 255, 461, 500
BspCNI	CTCAG	2 cut(s)	87, 93
BspLI	GGNNCC	6 cut(s)	58, 171, 456, 535, 606, 638
BspPI	GGATC	1 cut(s)	469
BspT107I	GGYRCC	2 cut(s)	454, 533
BsrFI	RCCGGY	4 cut(s)	172, 251, 451, 457
BsrI	ACTGG	1 cut(s)	530
BssAI	RCCGGY	4 cut(s)	172, 251, 451, 457
BssECI	CCNNGG	4 cut(s)	52, 271, 436, 437
BssMI	GATC	2 cut(s)	331, 474
BssNI	GRCGYC	2 cut(s)	455, 534
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	153, 190
Bst6I	CTCTTC	2 cut(s)	331, 647
BstACI	GRCGYC	2 cut(s)	455, 534
BstC8I	GCNNGC	3 cut(s)	295, 453, 459
BstDEI	CTNAG	3 cut(s)	74, 80, 655
BstH2I	RGCGCY	2 cut(s)	458, 537
BstHHI	GCGC	2 cut(s)	457, 536
BstKTI	GATC	2 cut(s)	334, 477
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	331, 474
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 169, 252, 299, 346, 657
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	4 cut(s)	165, 271, 435, 436
BstV1I	GCAGC	2 cut(s)	28, 172
BstV2I	GAAGAC	1 cut(s)	513
BstZI	CGGCCG	1 cut(s)	498
BsuRI	GGCC	5 cut(s)	22, 57, 255, 461, 500
Cac8I	GCNNGC	3 cut(s)	295, 453, 459
CfoI	GCGC	2 cut(s)	457, 536
Cfr10I	RCCGGY	4 cut(s)	172, 251, 451, 457
Cfr13I	GGNCC	4 cut(s)	21, 56, 254, 637
Cfr9I	CCCGGG	1 cut(s)	436
CviAII	CATG	3 cut(s)	229, 466, 568
DdeI	CTNAG	3 cut(s)	74, 80, 655
DinI	GGCGCC	2 cut(s)	456, 535
DpnI	GATC	2 cut(s)	333, 476
DpnII	GATC	2 cut(s)	331, 474
EaeI	YGGCCR	2 cut(s)	459, 498
EagI	CGGCCG	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	331, 647
EarI	CTCTTC	2 cut(s)	331, 647
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	3 cut(s)	45, 578, 626
Eco47I	GGWCC	1 cut(s)	637
Eco52I	CGGCCG	1 cut(s)	498
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	2 cut(s)	56, 637
EcoRI	GAATTC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	3 cut(s)	45, 578, 626
EgeI	GGCGCC	2 cut(s)	456, 535
EheI	GGCGCC	2 cut(s)	456, 535
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	3 cut(s)	232, 469, 571
FaiI	YATR	4 cut(s)	230, 395, 467, 569
FaqI	GGGAC	2 cut(s)	217, 650
FatI	CATG	3 cut(s)	228, 465, 567
FauI	CCCGC	6 cut(s)	15, 68, 295, 302, 354, 519
Fnu4HI	GCNGC	9 cut(s)	17, 20, 110, 161, 291, 375, 470, 501, 553
FriOI	GRGCYC	3 cut(s)	45, 578, 626
Fsp4HI	GCNGC	9 cut(s)	17, 20, 110, 161, 291, 375, 470, 501, 553
FspBI	CTAG	1 cut(s)	664
GlaI	GCGC	2 cut(s)	456, 535
GluI	GCNGC	9 cut(s)	17, 20, 110, 161, 291, 375, 470, 501, 553
GsaI	CCCAGC	2 cut(s)	482, 486
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	2 cut(s)	458, 537
HaeIII	GGCC	5 cut(s)	22, 57, 255, 461, 500
HapII	CCGG	7 cut(s)	173, 252, 273, 437, 452, 458, 497
HhaI	GCGC	2 cut(s)	457, 536
Hin1I	GRCGYC	2 cut(s)	455, 534
Hin1II	CATG	3 cut(s)	232, 469, 571
Hin6I	GCGC	2 cut(s)	455, 534
HinP1I	GCGC	2 cut(s)	455, 534
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	78, 89, 205, 442
HpaII	CCGG	7 cut(s)	173, 252, 273, 437, 452, 458, 497
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	77, 331, 621
Hpy188III	TCNNGA	3 cut(s)	103, 310, 407
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	267, 588, 636
HpyCH4III	ACNGT	2 cut(s)	153, 190
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 169, 252, 299, 346, 657
HpyF3I	CTNAG	3 cut(s)	74, 80, 655
Hsp92I	GRCGYC	2 cut(s)	455, 534
Hsp92II	CATG	3 cut(s)	232, 469, 571
HspAI	GCGC	2 cut(s)	455, 534
KasI	GGCGCC	2 cut(s)	454, 533
KroI	GCCGGC	2 cut(s)	451, 457
KroNI	GCCGGC	2 cut(s)	453, 459
Kzo9I	GATC	2 cut(s)	331, 474
LmnI	GCTCC	4 cut(s)	40, 48, 169, 610
Lsp1109I	GCAGC	2 cut(s)	28, 172
MaeI	CTAG	1 cut(s)	664
MalI	GATC	2 cut(s)	333, 476
MboI	GATC	2 cut(s)	331, 474
MboII	GAAGA	5 cut(s)	318, 481, 518, 621, 634
MhlI	GDGCHC	3 cut(s)	45, 578, 626
MluCI	AATT	2 cut(s)	355, 586
Mly113I	GGCGCC	2 cut(s)	455, 534
MlyI	GAGTC	2 cut(s)	72, 83
MmeI	TCCRAC	1 cut(s)	265
MreI	CGCCGGCG	1 cut(s)	451
MroNI	GCCGGC	2 cut(s)	451, 457
MspA1I	CMGCKG	3 cut(s)	19, 482, 552
MspI	CCGG	7 cut(s)	173, 252, 273, 437, 452, 458, 497
MspR9I	CCNGG	4 cut(s)	167, 273, 437, 438
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	6 cut(s)	16, 169, 252, 299, 346, 657
NaeI	GCCGGC	2 cut(s)	453, 459
NarI	GGCGCC	2 cut(s)	455, 534
NciI	CCSGG	3 cut(s)	273, 437, 438
NdeII	GATC	2 cut(s)	331, 474
NgoMIV	GCCGGC	2 cut(s)	451, 457
NlaIII	CATG	3 cut(s)	232, 469, 571
NlaIV	GGNNCC	6 cut(s)	58, 171, 456, 535, 606, 638
NmeAIII	GCCGAG	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdiI	GCCGGC	2 cut(s)	453, 459
PfeI	GAWTC	2 cut(s)	205, 442
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	9 cut(s)	18, 21, 111, 162, 292, 376, 471, 502, 554
PleI	GAGTC	2 cut(s)	72, 83
PluTI	GGCGCC	2 cut(s)	458, 537
PpsI	GAGTC	2 cut(s)	72, 83
PpuMI	RGGWCCY	1 cut(s)	637
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	2 cut(s)	478, 482
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	6 cut(s)	58, 171, 456, 535, 606, 638
PspPI	GGNCC	4 cut(s)	21, 56, 254, 637
PspPPI	RGGWCCY	1 cut(s)	637
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	45
SatI	GCNGC	9 cut(s)	17, 20, 110, 161, 291, 375, 470, 501, 553
Sau3AI	GATC	2 cut(s)	331, 474
Sau96I	GGNCC	4 cut(s)	21, 56, 254, 637
SchI	GAGTC	2 cut(s)	72, 83
ScrFI	CCNGG	4 cut(s)	167, 273, 437, 438
SduI	GDGCHC	3 cut(s)	45, 578, 626
SetI	ASST	8 cut(s)	45, 129, 145, 215, 282, 484, 642, 653
SfoI	GGCGCC	2 cut(s)	456, 535
SgrAI	CRCCGGYG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	637
SmaI	CCCGGG	1 cut(s)	438
Sse9I	AATT	2 cut(s)	355, 586
SspDI	GGCGCC	2 cut(s)	454, 533
SspMI	CTAG	1 cut(s)	664
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	4 cut(s)	165, 271, 435, 436
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	153, 190
TaqI	TCGA	2 cut(s)	309, 584
TasI	AATT	2 cut(s)	355, 586
TauI	GCSGC	7 cut(s)	22, 112, 293, 377, 472, 503, 555
TfiI	GAWTC	2 cut(s)	205, 442
TseI	GCWGC	2 cut(s)	16, 160
TspDTI	ATGAA	3 cut(s)	17, 217, 556
TspGWI	ACGGA	2 cut(s)	82, 205
TspMI	CCCGGG	1 cut(s)	436
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	637
XapI	RAATTY	2 cut(s)	355, 586
XmaI	CCCGGG	1 cut(s)	436
XspI	CTAG	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.