Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Reverse (-)

59803149 .. 59813822

Gene Structure 10674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0441500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATCCGCCGGTGTCGCTGGTGAATGAATGCTCGTACTCCAACGGCAATGCGACGTCGTATAATCTCTCGGAGATCTGGCAGTTTCCGATGAGCAGCGGCGGCGCCGGCATGGGAGAGACTGGAGGGGGACTGGGGCTGCGGAGGCCCAGTTTCGGGCAGTTTGGGGACGTTTCGGCGGCGATTCGGGACGTTTTGGGCGGTGGTGATCCGAATCCGATGAGTTTGGACCACCGAGCGAGGAAGAGGCGCGATGCTGACGAGGAGGAGTCGTCGCCGAAAAGCAGCGGCAATATTGGCGCGAACGATTCTGATGGGAAACGGCTTAAAACAGCGGGGAGATGTGGAGATGAGAATCTTGAGGCCAAAGCTGAGGCGGAAACGAGTTCAGGGAAGCCTGTGGAGCAGAACACTCAGCCGCCGGATCCACCTAAGCAGGACTATATCCATGTACGAGCAAGAAGGGGTCAAGCTACTGACAGTCACAGTCTTGCAGAAAGAGCTAGAAGAGAAAAGATTAGCGAAAGGATGAAAATTCTCCAAGATCTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATAATTAATTATATCCAATCATTGCAGCGTCAAGTGGAGTTCCTGTCTATGAAGCTTGAAGCAGTTAATACAAGAATGACTCCTGCCATCGAGGTGTTTCCTTCTAAAGAAATCAAATTGTCATCTCAGTTTGGTCAGCAAACATTCGACACTGCTGCAATGGCATTCGGTACACAACCTCCAAGGGAATATAGCCGTGGATCTTCACCAGAATGGTTGCATATGCAAGTTGGTGGCGGTTTTGAAAGAACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0014074 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0046683 GO:0048037 GO:0050662 GO:0050896 GO:0051591 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

284

Amino Acids

30.95

Weight (kDa)

5.92

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	161 - 208	4.3e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	166 - 211	1.9e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccII	CGCG	2 cut(s)	252, 302
AclWI	GGATC	5 cut(s)	12, 203, 419, 432, 805
AcsI	RAATTY	1 cut(s)	534
AcyI	GRCGYC	2 cut(s)	56, 105
AfaI	GTAC	3 cut(s)	38, 453, 769
AfiI	CCNNNNNNNGG	3 cut(s)	155, 156, 547
AgsI	TTSAA	2 cut(s)	656, 842
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	4 cut(s)	371, 473, 503, 652
AluI	AGCT	4 cut(s)	371, 473, 503, 652
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	5 cut(s)	12, 203, 419, 432, 805
AoxI	GGCC	2 cut(s)	146, 363
ApeKI	GCWGC	5 cut(s)	96, 139, 285, 622, 752
ApoI	RAATTY	1 cut(s)	534
AseI	ATTAAT	1 cut(s)	603
AspLEI	GCGC	3 cut(s)	107, 252, 302
AspS9I	GGNCC	4 cut(s)	147, 229, 550, 586
AsuHPI	GGTGA	3 cut(s)	34, 218, 795
AvaII	GGWCC	3 cut(s)	229, 550, 586
BamHI	GGATCC	2 cut(s)	4, 424
BanI	GGYRCC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	5 cut(s)	108, 126, 297, 634, 739
BccI	CCATC	2 cut(s)	308, 692
BceAI	ACGGC	3 cut(s)	61, 338, 777
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	108
BglII	AGATCT	2 cut(s)	75, 544
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	3 cut(s)	229, 550, 586
BmgT120I	GGNCC	4 cut(s)	147, 229, 550, 586
BmiI	GGNNCC	4 cut(s)	6, 106, 426, 552
BmrFI	CCNGG	1 cut(s)	555
BmrI	ACTGGG	2 cut(s)	143, 144
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	2 cut(s)	143, 144
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	2 cut(s)	372, 432
BpuEI	CTTGAG	1 cut(s)	380
BsaBI	GATNNNNATC	2 cut(s)	213, 354
BsaHI	GRCGYC	2 cut(s)	56, 105
BsaJI	CCNNGG	3 cut(s)	553, 779, 793
BsaXI	ACNNNNNCTCC	8 cut(s)	136, 166, 257, 287, 626, 656, 760, 790
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 156, 547
Bse118I	RCCGGY	2 cut(s)	10, 107
Bse1I	ACTGG	4 cut(s)	127, 138, 150, 588
Bse3DI	GCAATG	3 cut(s)	55, 617, 762
Bse8I	GATNNNNATC	2 cut(s)	213, 354
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	553, 779, 793
BseGI	GGATG	1 cut(s)	534
BseJI	GATNNNNATC	2 cut(s)	213, 354
BseLI	CCNNNNNNNGG	3 cut(s)	155, 156, 547
BseMI	GCAATG	3 cut(s)	55, 617, 762
BseMII	CTCAG	3 cut(s)	363, 428, 737
BseNI	ACTGG	4 cut(s)	127, 138, 150, 588
BseRI	GAGGAG	2 cut(s)	278, 281
BseXI	GCAGC	5 cut(s)	108, 126, 297, 634, 739
Bsh1236I	CGCG	2 cut(s)	252, 302
BshFI	GGCC	2 cut(s)	148, 365
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	11, 108, 422
BslFI	GGGAC	4 cut(s)	144, 182, 203, 536
BslI	CCNNNNNNNGG	3 cut(s)	155, 156, 547
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	4 cut(s)	144, 182, 203, 536
BsmI	GAATGC	2 cut(s)	35, 761
BsnI	GGCC	2 cut(s)	148, 365
Bsp143I	GATC	6 cut(s)	4, 75, 208, 424, 544, 797
BspANI	GGCC	2 cut(s)	148, 365
BspCNI	CTCAG	3 cut(s)	364, 427, 736
BspFNI	CGCG	2 cut(s)	252, 302
BspLI	GGNNCC	4 cut(s)	6, 106, 426, 552
BspPI	GGATC	5 cut(s)	12, 203, 419, 432, 805
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	3 cut(s)	55, 617, 762
BsrFI	RCCGGY	2 cut(s)	10, 107
BsrI	ACTGG	4 cut(s)	127, 138, 150, 588
BssAI	RCCGGY	2 cut(s)	10, 107
BssECI	CCNNGG	3 cut(s)	553, 779, 793
BssMI	GATC	6 cut(s)	4, 75, 208, 424, 544, 797
BssNI	GRCGYC	2 cut(s)	56, 105
BssT1I	CCWWGG	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	482, 488
Bst6I	CTCTTC	2 cut(s)	239, 502
BstACI	GRCGYC	2 cut(s)	56, 105
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	372, 414, 432, 723
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	1 cut(s)	534
BstFNI	CGCG	2 cut(s)	252, 302
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	3 cut(s)	107, 252, 302
BstKTI	GATC	6 cut(s)	7, 78, 211, 427, 547, 800
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	6 cut(s)	4, 75, 208, 424, 544, 797
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 102, 108, 145, 297, 403, 500, 758
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstUI	CGCG	2 cut(s)	252, 302
BstV1I	GCAGC	5 cut(s)	108, 126, 297, 634, 739
BstX2I	RGATCY	5 cut(s)	4, 75, 424, 544, 797
BstYI	RGATCY	5 cut(s)	4, 75, 424, 544, 797
BsuRI	GGCC	2 cut(s)	148, 365
BtgI	CCRYGG	1 cut(s)	793
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	534
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	2 cut(s)	581, 747
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	3 cut(s)	107, 252, 302
Cfr10I	RCCGGY	2 cut(s)	10, 107
Cfr13I	GGNCC	4 cut(s)	147, 229, 550, 586
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	3 cut(s)	37, 452, 768
CviAII	CATG	2 cut(s)	112, 449
CviQI	GTAC	3 cut(s)	37, 452, 768
DdeI	CTNAG	4 cut(s)	372, 414, 432, 723
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	6 cut(s)	6, 77, 210, 426, 546, 799
DpnII	GATC	6 cut(s)	4, 75, 208, 424, 544, 797
Eam1104I	CTCTTC	2 cut(s)	239, 502
EarI	CTCTTC	2 cut(s)	239, 502
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	779
Eco47I	GGWCC	3 cut(s)	229, 550, 586
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	779
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	779
FaeI	CATG	2 cut(s)	115, 452
FaqI	GGGAC	4 cut(s)	144, 182, 203, 536
FatI	CATG	2 cut(s)	111, 448
FauI	CCCGC	1 cut(s)	328
FauNDI	CATATG	1 cut(s)	819
FokI	GGATG	1 cut(s)	541
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	3 cut(s)	106, 251, 301
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	148, 365
HapII	CCGG	3 cut(s)	11, 108, 422
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	3 cut(s)	107, 252, 302
Hin1I	GRCGYC	2 cut(s)	56, 105
Hin1II	CATG	2 cut(s)	115, 452
Hin6I	GCGC	3 cut(s)	105, 250, 300
HinP1I	GCGC	3 cut(s)	105, 250, 300
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	6 cut(s)	184, 214, 269, 308, 355, 676
HpaII	CCGG	3 cut(s)	11, 108, 422
HphI	GGTGA	3 cut(s)	34, 218, 795
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	5 cut(s)	73, 90, 213, 219, 313
Hpy188III	TCNNGA	2 cut(s)	188, 359
Hpy8I	GTNNAC	1 cut(s)	770
Hpy99I	CGWCG	3 cut(s)	58, 61, 277
HpyAV	CCTTC	2 cut(s)	456, 708
HpyCH4III	ACNGT	2 cut(s)	482, 488
HpyCH4IV	ACGT	3 cut(s)	56, 171, 192
HpyCH4V	TGCA	5 cut(s)	494, 622, 755, 817, 823
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 102, 108, 145, 297, 403, 500, 758
HpyF3I	CTNAG	4 cut(s)	372, 414, 432, 723
HpySE526I	ACGT	3 cut(s)	56, 171, 192
Hsp92I	GRCGYC	2 cut(s)	56, 105
Hsp92II	CATG	2 cut(s)	115, 452
HspAI	GCGC	3 cut(s)	105, 250, 300
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	6 cut(s)	4, 75, 208, 424, 544, 797
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	5 cut(s)	108, 126, 297, 634, 739
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	3 cut(s)	56, 171, 192
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	6 cut(s)	6, 77, 210, 426, 546, 799
MboI	GATC	6 cut(s)	4, 75, 208, 424, 544, 797
MboII	GAAGA	3 cut(s)	256, 519, 792
MflI	RGATCY	5 cut(s)	4, 75, 424, 544, 797
MluCI	AATT	4 cut(s)	534, 600, 604, 713
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	278, 670
MmeI	TCCRAC	1 cut(s)	66
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	3 cut(s)	327, 603, 663
MslI	CAYNNNNRTG	2 cut(s)	689, 808
MspA1I	CMGCKG	3 cut(s)	99, 288, 335
MspI	CCGG	3 cut(s)	11, 108, 422
MspR9I	CCNGG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	35, 761
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	2 cut(s)	252, 302
MwoI	GCNNNNNNNGC	8 cut(s)	16, 102, 108, 145, 297, 403, 500, 758
NaeI	GCCGGC	1 cut(s)	109
NarI	GGCGCC	1 cut(s)	105
NdeI	CATATG	1 cut(s)	819
NdeII	GATC	6 cut(s)	4, 75, 208, 424, 544, 797
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	115, 452
NlaIV	GGNNCC	4 cut(s)	6, 106, 426, 552
NmuCI	GTSAC	1 cut(s)	482
PctI	GAATGC	2 cut(s)	35, 761
PdiI	GCCGGC	1 cut(s)	109
PfeI	GAWTC	4 cut(s)	184, 214, 308, 355
PflMI	CCANNNNNTGG	1 cut(s)	547
PleI	GAGTC	2 cut(s)	277, 670
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	277, 670
PshBI	ATTAAT	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	4 cut(s)	6, 106, 426, 552
PspPI	GGNCC	4 cut(s)	147, 229, 550, 586
PsuI	RGATCY	5 cut(s)	4, 75, 424, 544, 797
RsaI	GTAC	3 cut(s)	38, 453, 769
RsaNI	GTAC	3 cut(s)	37, 452, 768
RseI	CAYNNNNRTG	2 cut(s)	689, 808
SaqAI	TTAA	3 cut(s)	327, 603, 663
Sau3AI	GATC	6 cut(s)	4, 75, 208, 424, 544, 797
Sau96I	GGNCC	4 cut(s)	147, 229, 550, 586
SchI	GAGTC	2 cut(s)	278, 670
ScrFI	CCNGG	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	244
SfoI	GGCGCC	1 cut(s)	106
SgrAI	CRCCGGYG	1 cut(s)	10
SinI	GGWCC	3 cut(s)	229, 550, 586
SmiMI	CAYNNNNRTG	2 cut(s)	689, 808
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	534, 600, 604, 713
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	2 cut(s)	482, 488
TaiI	ACGT	3 cut(s)	59, 174, 195
TaqI	TCGA	2 cut(s)	687, 744
TasI	AATT	4 cut(s)	534, 600, 604, 713
TauI	GCSGC	5 cut(s)	102, 105, 182, 291, 421
TfiI	GAWTC	4 cut(s)	184, 214, 308, 355
Tru1I	TTAA	3 cut(s)	327, 603, 663
Tru9I	TTAA	3 cut(s)	327, 603, 663
TscAI	CASTG	2 cut(s)	588, 754
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	5 cut(s)	96, 139, 285, 622, 752
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	42, 545, 662
TspRI	CASTG	2 cut(s)	588, 754
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	3 cut(s)	229, 550, 586
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	1 cut(s)	534
XspI	CTAG	1 cut(s)	504
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.