Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Reverse (-)

29310867 .. 29312704

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGTGTGGATTACTACAAGCTTCTGCAGGTGGACAAGAATGCCAACGACGACGATTTGAAGAAGGCCTACAGAAAGCTCGCCATGAAGTGGCACCCTGATAAGAACCCCACCAACAAGAAGGAAGCCGAGTCCAAGTTCAAACAAATCTCTGAGGCCTACGAGGTTCTGAGTGATCCCCAGAAGAGAGCAATCTATGATCAATACGGAGAAGAAGGGCTGAAAGGCCAAGTGCCGCCGCCGGATGCCGGTGGGCCTGGCGGTGGAGCTACCTTCTTCCAAACTGGAGACGGTCCAAATGTGTTTAGATTCAACCCCAGAAACGCCAACGACATTTTCGCTGAGATTTTCGGGTTTTCGAGCCCTATGGGCGGAATGGGAGGTGGAATGGGTGGAATGGGCGGTGGCGGCATGAGGGGTGGAAGATCTTTCGGTGGAATGTTTGGGGAGGACATGTTTAGTTCATTCGGAGAAGCCCGGCCCATGAGCCATGCACCACGAAAAGCTGAACCAATAGAGAAGAGGTTGCCTTGCAGCCTTGAGGAGCTCTATAAGGGGACTACCAAGAAGATGAAGATTTCGAGGGAAATTGCAGATGCAAGCGGGATGACAATGCCGGTGGAGGAAATCCTAACCATAGAGATCAAGCCTGGCTGGAAAAAGGGAACCAAGATCACGTTCCCGGAGAAAGGAAACGAGCAAGGAAACATGATTCCTGCTGATCTTGTGTTCATAATTGATGAGAAACCACACCCCACATTCACAAGGGACGGGAACGACCTGGTCGTCACGCAGAAGATCACTCTAGCAGAAGCTCTAACAGGCTACACAGTCGACCTGACCACCCTAGATGGAAGGAGCCTCAGCATCCCCATCACCAATGTGATCAGTCCAAACTACGAGGAGGTAGTCCCTAGAGAGGGAATGCCTGTACCAAAGGACCCCTCCAAGAAGGGTAACCTCAGAATCAAATTCAACATCAAGTTTCCGGCGAGATTGAGTGCCGACCAGAAGGCCGGAATTAAGAAATATTTGCCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

348

Amino Acids

38.04

Weight (kDa)

8.8

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	5.1e-28	DnaJ domain
DnaJ_C	PF01556	172 - 330	6.9e-41	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
AasI	GACNNNNNNGTC	1 cut(s)	785
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	834
AciI	CCGC	7 cut(s)	236, 239, 261, 372, 402, 408, 603
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	971
AfaI	GTAC	1 cut(s)	933
AfiI	CCNNNNNNNGG	7 cut(s)	90, 248, 263, 371, 689, 919, 920
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	4 cut(s)	61, 142, 313, 976
AjnI	CCWGG	3 cut(s)	256, 649, 780
AjuI	GAANNNNNNNTTGG	4 cut(s)	320, 352, 662, 694
AleI	CACNNNNGTG	1 cut(s)	881
AluBI	AGCT	6 cut(s)	22, 79, 269, 506, 547, 815
AluI	AGCT	6 cut(s)	22, 79, 269, 506, 547, 815
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	6 cut(s)	66, 156, 226, 254, 479, 1014
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	1 cut(s)	971
AspS9I	GGNCC	4 cut(s)	254, 293, 480, 940
AsuC2I	CCSGG	2 cut(s)	478, 683
AsuHPI	GGTGA	1 cut(s)	868
AvaII	GGWCC	2 cut(s)	293, 940
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	365, 549
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	549
BbvCI	CCTCAGC	1 cut(s)	863
BbvI	GCAGC	1 cut(s)	546
BccI	CCATC	2 cut(s)	845, 881
BciT130I	CCWGG	3 cut(s)	258, 651, 782
BclI	TGATCA	2 cut(s)	199, 885
BcnI	CCSGG	2 cut(s)	478, 683
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	3 cut(s)	806, 848, 915
BfmI	CTRYAG	2 cut(s)	26, 70
BfuAI	ACCTGC	1 cut(s)	19
BglI	GCCNNNNNGGC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	4 cut(s)	236, 239, 409, 535
BlsI	GCNGC	4 cut(s)	237, 240, 410, 536
Bme1390I	CCNGG	5 cut(s)	258, 478, 651, 683, 782
Bme18I	GGWCC	2 cut(s)	293, 940
BmgT120I	GGNCC	4 cut(s)	254, 293, 480, 940
BmiI	GGNNCC	4 cut(s)	95, 667, 860, 942
BmrFI	CCNGG	5 cut(s)	258, 478, 651, 683, 782
BmsI	GCATC	3 cut(s)	235, 586, 876
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	863
BpuEI	CTTGAG	1 cut(s)	560
BpuMI	CCSGG	2 cut(s)	478, 683
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	7 cut(s)	90, 248, 263, 371, 689, 919, 920
Bse118I	RCCGGY	3 cut(s)	248, 616, 1036
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	3 cut(s)	258, 651, 782
BseGI	GGATG	3 cut(s)	250, 612, 867
BseLI	CCNNNNNNNGG	7 cut(s)	90, 248, 263, 371, 689, 919, 920
BseMII	CTCAG	5 cut(s)	144, 161, 333, 877, 976
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	2 cut(s)	557, 917
BseXI	GCAGC	1 cut(s)	546
BshFI	GGCC	6 cut(s)	68, 158, 228, 256, 481, 1016
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	8 cut(s)	242, 249, 478, 617, 683, 989, 1017, 1037
BslFI	GGGAC	3 cut(s)	571, 782, 896
BslI	CCNNNNNNNGG	7 cut(s)	90, 248, 263, 371, 689, 919, 920
BsmAI	GTCTC	1 cut(s)	282
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	3 cut(s)	571, 782, 896
BsmI	GAATGC	2 cut(s)	46, 930
BsnI	GGCC	6 cut(s)	68, 158, 228, 256, 481, 1016
Bsp1286I	GDGCHC	2 cut(s)	365, 549
Bsp143I	GATC	8 cut(s)	175, 199, 425, 642, 672, 721, 798, 885
BspACI	CCGC	7 cut(s)	236, 239, 261, 372, 402, 408, 603
BspANI	GGCC	6 cut(s)	68, 158, 228, 256, 481, 1016
BspCNI	CTCAG	5 cut(s)	145, 162, 334, 876, 975
BspLI	GGNNCC	4 cut(s)	95, 667, 860, 942
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	93
BsrFI	RCCGGY	3 cut(s)	248, 616, 1036
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	3 cut(s)	248, 616, 1036
BssMI	GATC	8 cut(s)	175, 199, 425, 642, 672, 721, 798, 885
Bst2UI	CCWGG	3 cut(s)	258, 651, 782
Bst4CI	ACNGT	2 cut(s)	293, 832
Bst6I	CTCTTC	2 cut(s)	179, 515
BstC8I	GCNNGC	3 cut(s)	81, 601, 1038
BstDEI	CTNAG	5 cut(s)	153, 170, 342, 863, 962
BstEII	GGTNACC	1 cut(s)	956
BstF5I	GGATG	3 cut(s)	250, 612, 867
BstKTI	GATC	8 cut(s)	178, 202, 428, 645, 675, 724, 801, 888
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	8 cut(s)	175, 199, 425, 642, 672, 721, 798, 885
BstMWI	GCNNNNNNNGC	2 cut(s)	369, 408
BstNI	CCWGG	3 cut(s)	258, 651, 782
BstNSI	RCATGY	1 cut(s)	457
BstPI	GGTNACC	1 cut(s)	956
BstSCI	CCNGG	5 cut(s)	256, 476, 649, 681, 780
BstSFI	CTRYAG	2 cut(s)	26, 70
BstV1I	GCAGC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	6 cut(s)	68, 158, 228, 256, 481, 1016
BtsCI	GGATG	3 cut(s)	250, 612, 867
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	81, 601, 1038
Cfr10I	RCCGGY	3 cut(s)	248, 616, 1036
Cfr13I	GGNCC	4 cut(s)	254, 293, 480, 940
CsiI	ACCWGGT	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	932
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CviAII	CATG	6 cut(s)	85, 412, 454, 484, 491, 709
CviQI	GTAC	1 cut(s)	932
DdeI	CTNAG	5 cut(s)	153, 170, 342, 863, 962
DpnI	GATC	8 cut(s)	177, 201, 427, 644, 674, 723, 800, 887
DpnII	GATC	8 cut(s)	175, 199, 425, 642, 672, 721, 798, 885
DrdI	GACNNNNNNGTC	1 cut(s)	785
DseDI	GACNNNNNNGTC	1 cut(s)	785
Eam1104I	CTCTTC	2 cut(s)	179, 515
EarI	CTCTTC	2 cut(s)	179, 515
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	547
Eco147I	AGGCCT	2 cut(s)	68, 158
Eco24I	GRGCYC	2 cut(s)	365, 549
Eco47I	GGWCC	2 cut(s)	293, 940
Eco53kI	GAGCTC	1 cut(s)	547
Eco91I	GGTNACC	1 cut(s)	956
EcoICRI	GAGCTC	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	940
EcoO65I	GGTNACC	1 cut(s)	956
EcoRII	CCWGG	3 cut(s)	256, 649, 780
EcoT38I	GRGCYC	2 cut(s)	365, 549
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	6 cut(s)	88, 415, 457, 487, 494, 712
FaqI	GGGAC	3 cut(s)	571, 782, 896
FatI	CATG	6 cut(s)	84, 411, 453, 483, 490, 708
FauI	CCCGC	1 cut(s)	596
FbaI	TGATCA	2 cut(s)	199, 885
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	4 cut(s)	236, 239, 409, 535
FokI	GGATG	3 cut(s)	257, 619, 854
FriOI	GRGCYC	2 cut(s)	365, 549
Fsp4HI	GCNGC	4 cut(s)	236, 239, 409, 535
FspBI	CTAG	3 cut(s)	806, 848, 915
GluI	GCNGC	4 cut(s)	236, 239, 409, 535
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	6 cut(s)	68, 158, 228, 256, 481, 1016
HapII	CCGG	8 cut(s)	242, 249, 478, 617, 683, 989, 1017, 1037
Hin1II	CATG	6 cut(s)	88, 415, 457, 487, 494, 712
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	131, 309, 712, 966
HpaII	CCGG	8 cut(s)	242, 249, 478, 617, 683, 989, 1017, 1037
HphI	GGTGA	1 cut(s)	868
Hpy166II	GTNNAC	2 cut(s)	34, 835
Hpy188I	TCNGA	4 cut(s)	154, 171, 470, 965
Hpy8I	GTNNAC	2 cut(s)	34, 835
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyAV	CCTTC	7 cut(s)	58, 115, 209, 283, 849, 946, 1006
HpyCH4III	ACNGT	2 cut(s)	293, 832
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	5 cut(s)	28, 494, 534, 593, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	369, 408
HpyF3I	CTNAG	5 cut(s)	153, 170, 342, 863, 962
HpySE526I	ACGT	1 cut(s)	677
Hsp92II	CATG	6 cut(s)	88, 415, 457, 487, 494, 712
KroI	GCCGGC	1 cut(s)	1036
KroNI	GCCGGC	1 cut(s)	1038
Ksp22I	TGATCA	2 cut(s)	199, 885
Kzo9I	GATC	8 cut(s)	175, 199, 425, 642, 672, 721, 798, 885
LmnI	GCTCC	3 cut(s)	266, 544, 858
Lsp1109I	GCAGC	1 cut(s)	546
LweI	GCATC	3 cut(s)	235, 586, 876
MabI	ACCWGGT	1 cut(s)	780
MaeI	CTAG	3 cut(s)	806, 848, 915
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	2 cut(s)	787, 956
MalI	GATC	8 cut(s)	177, 201, 427, 644, 674, 723, 800, 887
MboI	GATC	8 cut(s)	175, 199, 425, 642, 672, 721, 798, 885
MboII	GAAGA	9 cut(s)	73, 196, 224, 268, 435, 532, 580, 586, 808
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	2 cut(s)	365, 549
MluCI	AATT	4 cut(s)	588, 735, 971, 1020
MlyI	GAGTC	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	1036
MseI	TTAA	1 cut(s)	1023
MslI	CAYNNNNRTG	1 cut(s)	881
MspI	CCGG	8 cut(s)	242, 249, 478, 617, 683, 989, 1017, 1037
MspR9I	CCNGG	5 cut(s)	258, 478, 651, 683, 782
Mva1269I	GAATGC	2 cut(s)	46, 930
MvaI	CCWGG	3 cut(s)	258, 651, 782
MwoI	GCNNNNNNNGC	2 cut(s)	369, 408
NaeI	GCCGGC	1 cut(s)	1038
NciI	CCSGG	2 cut(s)	478, 683
NdeII	GATC	8 cut(s)	175, 199, 425, 642, 672, 721, 798, 885
NgoMIV	GCCGGC	1 cut(s)	1036
NlaIII	CATG	6 cut(s)	88, 415, 457, 487, 494, 712
NlaIV	GGNNCC	4 cut(s)	95, 667, 860, 942
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	787
NspI	RCATGY	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	881
PaqCI	CACCTGC	1 cut(s)	19
PceI	AGGCCT	2 cut(s)	68, 158
PciI	ACATGT	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	783
PctI	GAATGC	2 cut(s)	46, 930
PdiI	GCCGGC	1 cut(s)	1038
PfeI	GAWTC	3 cut(s)	309, 712, 966
PflFI	GACNNNGTC	1 cut(s)	782
PflMI	CCANNNNNTGG	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	681
PkrI	GCNGC	4 cut(s)	237, 240, 410, 536
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	940
PscI	ACATGT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	940
Psp6I	CCWGG	3 cut(s)	256, 649, 780
PspEI	GGTNACC	1 cut(s)	956
PspGI	CCWGG	3 cut(s)	256, 649, 780
PspN4I	GGNNCC	4 cut(s)	95, 667, 860, 942
PspPI	GGNCC	4 cut(s)	254, 293, 480, 940
PspPPI	RGGWCCY	1 cut(s)	940
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	782
RsaI	GTAC	1 cut(s)	933
RsaNI	GTAC	1 cut(s)	932
RseI	CAYNNNNRTG	1 cut(s)	881
SacI	GAGCTC	1 cut(s)	549
SalI	GTCGAC	1 cut(s)	833
SaqAI	TTAA	1 cut(s)	1023
SatI	GCNGC	4 cut(s)	236, 239, 409, 535
Sau3AI	GATC	8 cut(s)	175, 199, 425, 642, 672, 721, 798, 885
Sau96I	GGNCC	4 cut(s)	254, 293, 480, 940
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	5 cut(s)	258, 478, 651, 683, 782
SduI	GDGCHC	2 cut(s)	365, 549
SexAI	ACCWGGT	1 cut(s)	780
SfaNI	GCATC	3 cut(s)	235, 586, 876
SfcI	CTRYAG	2 cut(s)	26, 70
SinI	GGWCC	2 cut(s)	293, 940
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	4 cut(s)	588, 735, 971, 1020
SseBI	AGGCCT	2 cut(s)	68, 158
SsiI	CCGC	7 cut(s)	236, 239, 261, 372, 402, 408, 603
SspI	AATATT	1 cut(s)	1031
SspMI	CTAG	3 cut(s)	806, 848, 915
SstI	GAGCTC	1 cut(s)	549
StuI	AGGCCT	2 cut(s)	68, 158
StyD4I	CCNGG	5 cut(s)	256, 476, 649, 681, 780
TaaI	ACNGT	2 cut(s)	293, 832
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	3 cut(s)	359, 581, 834
TasI	AATT	4 cut(s)	588, 735, 971, 1020
TauI	GCSGC	3 cut(s)	238, 241, 411
TfiI	GAWTC	3 cut(s)	309, 712, 966
Tru1I	TTAA	1 cut(s)	1023
Tru9I	TTAA	1 cut(s)	1023
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	4 cut(s)	101, 453, 587, 721
TspGWI	ACGGA	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	782
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	293, 940
XapI	RAATTY	1 cut(s)	971
XceI	RCATGY	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	834
XspI	CTAG	3 cut(s)	806, 848, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.