MD05G1310300.v1.1

DnaJ homolog subfamily B member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
44100943 .. 44103399
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1310300.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGGGTGTGGATTACTACAAGCTTCTGCAGGTGGACAAGAATGCCAACGACGACGATTTGAAGAAGGCTTACAGAAAGCTCGCCATGAAGTGGCACCCTGATAAGAACCCCACCAACAAGAAGGAAGCCGAGTCCAAGTTCAAACAAATCTCTGAGGCCTACGAGGTTCTGAGTGATCCCCAGAAGAGAGCAATCTATGATCAATACGGAGAAGAAGGGCTGAAAGGCCAAGTGCCGCCGCCGCCGGATGCCGGTGGGCCTGGCGGTGGAGCTACCTTCTTCCAAACTGGAGACGGTCCAAATGTGTTTAGATTCAACCCCAGAAACGCCAACGACATTTTTGCTGAGATTTTCGGGTTTTCGAGCCCCATGGGTGGAATGGGAAGTGGAATGGGTGGAATGGGCGGAATGGGCGGTGGCGGCATGAGGGGTGGAAGGTCTTTCGGTGGAATGTTTGGGGAGGACATGTTTAGTTCATTCGGAGAAGGCCGCCCCATGAGCCATGCGCCACGAAAAGCTGAACCAATAGAGAAGAGGTTGCCTTGCAGCCTTGAGGAGCTCTATAAGGGGACTACCAAGAAGATGAAGATTTCGAGGGAAATTGCAGATGCAAGCGGGATGACAATGCCAGTGGAGGAAATCCTAACCATAGAGATCAAGCCTGGCTGGAAAAAGGGAACCAAGATCACGTTCCCGGAGAAAGGAAACGAGCAAGGAAACATGATTCCTGCCGATCTTGTGTTCATAATTGATGAGAAACCACACCCCACATTCACAAGGGACGGGAACGACTTGGTCGTCACGCAGAAGATCACTCTAGCAGAAGCTCTAACAGGCTACACTGTCGACCTGACCACCCTAGATGGAAGGAGCATCACCATCCCCATCACCAATGTGATCAGTCCAAACTATGAGGAGGTAGTCCCTAAAGAGGGAATGCCTGTACCAAAGGACCCCTCCAAGAAGGGTAACCTCAGAATCAAATTCAACATCAAGTTTCCGACGAGATTGAGTCCCGACCAGAAGGCCGGAATTAAGAAATATTTGCCGGCTTGA

Protein Analysis

352

Amino Acids

38.44

Weight (kDa)

8.79

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 4 - 67 5.2e-28 DnaJ domain
DnaJ_C PF01556 176 - 334 2.6e-41 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
AasI GACNNNNNNGTC 1 cut(s) 797
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 90
AccI GTMKAC 1 cut(s) 846
AciI CCGC 9 cut(s) 236, 239, 242, 264, 405, 414, 420, 490, 615
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 983
AfaI GTAC 1 cut(s) 945
AfiI CCNNNNNNNGG 7 cut(s) 90, 251, 266, 374, 701, 931, 932
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 4 cut(s) 61, 142, 316, 988
AjnI CCWGG 2 cut(s) 259, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AleI CACNNNNGTG 1 cut(s) 893
AluBI AGCT 6 cut(s) 22, 79, 272, 518, 559, 827
AluI AGCT 6 cut(s) 22, 79, 272, 518, 559, 827
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 1 cut(s) 170
AoxI GGCC 5 cut(s) 156, 226, 257, 487, 1026
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 1 cut(s) 983
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 257, 296, 952
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 2 cut(s) 868, 880
AvaII GGWCC 2 cut(s) 296, 952
BanI GGYRCC 1 cut(s) 93
BanII GRGCYC 2 cut(s) 368, 561
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 558
BccI CCATC 3 cut(s) 857, 887, 893
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 2 cut(s) 261, 663
BclI TGATCA 2 cut(s) 199, 897
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 2 cut(s) 818, 860
BfmI CTRYAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 6 cut(s) 236, 239, 242, 421, 490, 547
BlsI GCNGC 6 cut(s) 237, 240, 243, 422, 491, 548
Bme1390I CCNGG 3 cut(s) 261, 663, 695
Bme18I GGWCC 2 cut(s) 296, 952
BmgT120I GGNCC 3 cut(s) 257, 296, 952
BmiI GGNNCC 3 cut(s) 95, 679, 954
BmrFI CCNGG 3 cut(s) 261, 663, 695
BmsI GCATC 3 cut(s) 238, 598, 882
BpmI CTGGAG 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 695
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 251, 266, 374, 701, 931, 932
Bse118I RCCGGY 2 cut(s) 251, 1048
Bse1I ACTGG 2 cut(s) 292, 629
BseBI CCWGG 2 cut(s) 261, 663
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 3 cut(s) 253, 624, 879
BseLI CCNNNNNNNGG 7 cut(s) 90, 251, 266, 374, 701, 931, 932
BseMII CTCAG 4 cut(s) 144, 161, 336, 988
BseNI ACTGG 2 cut(s) 292, 629
BseRI GAGGAG 2 cut(s) 569, 929
BseXI GCAGC 1 cut(s) 558
BshFI GGCC 5 cut(s) 158, 228, 259, 489, 1028
BshNI GGYRCC 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 5 cut(s) 245, 252, 695, 1029, 1049
BslFI GGGAC 4 cut(s) 583, 794, 908, 999
BslI CCNNNNNNNGG 7 cut(s) 90, 251, 266, 374, 701, 931, 932
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
BsmFI GGGAC 4 cut(s) 583, 794, 908, 999
BsmI GAATGC 2 cut(s) 46, 942
BsnI GGCC 5 cut(s) 158, 228, 259, 489, 1028
Bsp1286I GDGCHC 2 cut(s) 368, 561
Bsp143I GATC 7 cut(s) 175, 199, 654, 684, 733, 810, 897
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 9 cut(s) 236, 239, 242, 264, 405, 414, 420, 490, 615
BspANI GGCC 5 cut(s) 158, 228, 259, 489, 1028
BspCNI CTCAG 4 cut(s) 145, 162, 337, 987
BspLI GGNNCC 3 cut(s) 95, 679, 954
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 93
BsrFI RCCGGY 2 cut(s) 251, 1048
BsrI ACTGG 2 cut(s) 292, 629
BssAI RCCGGY 2 cut(s) 251, 1048
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 7 cut(s) 175, 199, 654, 684, 733, 810, 897
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 261, 663
Bst4CI ACNGT 2 cut(s) 296, 844
Bst6I CTCTTC 2 cut(s) 179, 527
BstC8I GCNNGC 3 cut(s) 81, 613, 1050
BstDEI CTNAG 4 cut(s) 153, 170, 345, 974
BstDSI CCRYGG 1 cut(s) 369
BstEII GGTNACC 1 cut(s) 968
BstF5I GGATG 3 cut(s) 253, 624, 879
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 7 cut(s) 178, 202, 657, 687, 736, 813, 900
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 7 cut(s) 175, 199, 654, 684, 733, 810, 897
BstMWI GCNNNNNNNGC 4 cut(s) 241, 411, 420, 498
BstNI CCWGG 2 cut(s) 261, 663
BstNSI RCATGY 1 cut(s) 469
BstPI GGTNACC 1 cut(s) 968
BstSCI CCNGG 3 cut(s) 259, 661, 693
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 558
BsuRI GGCC 5 cut(s) 158, 228, 259, 489, 1028
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 3 cut(s) 253, 624, 879
BtsIMutI CAGTG 2 cut(s) 636, 840
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 81, 613, 1050
CfoI GCGC 1 cut(s) 508
Cfr10I RCCGGY 2 cut(s) 251, 1048
Cfr13I GGNCC 3 cut(s) 257, 296, 952
Csp6I GTAC 1 cut(s) 944
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
CviAII CATG 7 cut(s) 85, 370, 424, 466, 496, 503, 721
CviQI GTAC 1 cut(s) 944
DdeI CTNAG 4 cut(s) 153, 170, 345, 974
DpnI GATC 7 cut(s) 177, 201, 656, 686, 735, 812, 899
DpnII GATC 7 cut(s) 175, 199, 654, 684, 733, 810, 897
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
Eam1104I CTCTTC 2 cut(s) 179, 527
EarI CTCTTC 2 cut(s) 179, 527
EciI GGCGGA 1 cut(s) 420
Ecl136II GAGCTC 1 cut(s) 559
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 2 cut(s) 368, 561
Eco47I GGWCC 2 cut(s) 296, 952
Eco53kI GAGCTC 1 cut(s) 559
Eco91I GGTNACC 1 cut(s) 968
EcoICRI GAGCTC 1 cut(s) 559
EcoO109I RGGNCCY 1 cut(s) 952
EcoO65I GGTNACC 1 cut(s) 968
EcoRII CCWGG 2 cut(s) 259, 661
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 2 cut(s) 368, 561
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 7 cut(s) 88, 373, 427, 469, 499, 506, 724
FaqI GGGAC 4 cut(s) 583, 794, 908, 999
FatI CATG 7 cut(s) 84, 369, 423, 465, 495, 502, 720
FauI CCCGC 1 cut(s) 608
FbaI TGATCA 2 cut(s) 199, 897
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 6 cut(s) 236, 239, 242, 421, 490, 547
FokI GGATG 3 cut(s) 260, 631, 866
FriOI GRGCYC 2 cut(s) 368, 561
Fsp4HI GCNGC 6 cut(s) 236, 239, 242, 421, 490, 547
FspBI CTAG 2 cut(s) 818, 860
GlaI GCGC 1 cut(s) 507
GluI GCNGC 6 cut(s) 236, 239, 242, 421, 490, 547
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 5 cut(s) 158, 228, 259, 489, 1028
HapII CCGG 5 cut(s) 245, 252, 695, 1029, 1049
HhaI GCGC 1 cut(s) 508
Hin1II CATG 7 cut(s) 88, 373, 427, 469, 499, 506, 724
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 5 cut(s) 131, 312, 724, 978, 1012
HpaII CCGG 5 cut(s) 245, 252, 695, 1029, 1049
HphI GGTGA 2 cut(s) 868, 880
Hpy166II GTNNAC 2 cut(s) 34, 847
Hpy188I TCNGA 5 cut(s) 154, 171, 482, 977, 1002
Hpy188III TCNNGA 1 cut(s) 1016
Hpy8I GTNNAC 2 cut(s) 34, 847
Hpy99I CGWCG 3 cut(s) 53, 56, 1006
HpyAV CCTTC 9 cut(s) 58, 115, 209, 286, 429, 479, 861, 958, 1018
HpyCH4III ACNGT 2 cut(s) 296, 844
HpyCH4IV ACGT 1 cut(s) 689
HpyCH4V TGCA 4 cut(s) 28, 546, 605, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 411, 420, 498
HpyF3I CTNAG 4 cut(s) 153, 170, 345, 974
HpySE526I ACGT 1 cut(s) 689
Hsp92II CATG 7 cut(s) 88, 373, 427, 469, 499, 506, 724
HspAI GCGC 1 cut(s) 506
KroI GCCGGC 1 cut(s) 1048
KroNI GCCGGC 1 cut(s) 1050
Ksp22I TGATCA 2 cut(s) 199, 897
Kzo9I GATC 7 cut(s) 175, 199, 654, 684, 733, 810, 897
LmnI GCTCC 3 cut(s) 269, 556, 870
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 3 cut(s) 238, 598, 882
MaeI CTAG 2 cut(s) 818, 860
MaeII ACGT 1 cut(s) 689
MaeIII GTNAC 2 cut(s) 799, 968
MalI GATC 7 cut(s) 177, 201, 656, 686, 735, 812, 899
MboI GATC 7 cut(s) 175, 199, 654, 684, 733, 810, 897
MboII GAAGA 8 cut(s) 73, 196, 224, 271, 544, 592, 598, 820
MhlI GDGCHC 2 cut(s) 368, 561
MluCI AATT 4 cut(s) 600, 747, 983, 1032
MlyI GAGTC 2 cut(s) 140, 1021
MmeI TCCRAC 1 cut(s) 1025
MroNI GCCGGC 1 cut(s) 1048
MseI TTAA 1 cut(s) 1035
MslI CAYNNNNRTG 1 cut(s) 893
MspI CCGG 5 cut(s) 245, 252, 695, 1029, 1049
MspR9I CCNGG 3 cut(s) 261, 663, 695
Mva1269I GAATGC 2 cut(s) 46, 942
MvaI CCWGG 2 cut(s) 261, 663
MwoI GCNNNNNNNGC 4 cut(s) 241, 411, 420, 498
NaeI GCCGGC 1 cut(s) 1050
NciI CCSGG 1 cut(s) 695
NcoI CCATGG 1 cut(s) 369
NdeII GATC 7 cut(s) 175, 199, 654, 684, 733, 810, 897
NgoMIV GCCGGC 1 cut(s) 1048
NlaIII CATG 7 cut(s) 88, 373, 427, 469, 499, 506, 724
NlaIV GGNNCC 3 cut(s) 95, 679, 954
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 799
NspI RCATGY 1 cut(s) 469
OliI CACNNNNGTG 1 cut(s) 893
PaqCI CACCTGC 1 cut(s) 19
PceI AGGCCT 1 cut(s) 158
PciI ACATGT 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PctI GAATGC 2 cut(s) 46, 942
PdiI GCCGGC 1 cut(s) 1050
PfeI GAWTC 3 cut(s) 312, 724, 978
PflFI GACNNNGTC 1 cut(s) 794
PflMI CCANNNNNTGG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 693
PkrI GCNGC 6 cut(s) 237, 240, 243, 422, 491, 548
PleI GAGTC 2 cut(s) 139, 1020
PpsI GAGTC 2 cut(s) 139, 1020
PpuMI RGGWCCY 1 cut(s) 952
PscI ACATGT 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 952
Psp6I CCWGG 2 cut(s) 259, 661
PspEI GGTNACC 1 cut(s) 968
PspGI CCWGG 2 cut(s) 259, 661
PspN4I GGNNCC 3 cut(s) 95, 679, 954
PspPI GGNCC 3 cut(s) 257, 296, 952
PspPPI RGGWCCY 1 cut(s) 952
PstI CTGCAG 1 cut(s) 30
PsyI GACNNNGTC 1 cut(s) 794
RsaI GTAC 1 cut(s) 945
RsaNI GTAC 1 cut(s) 944
RseI CAYNNNNRTG 1 cut(s) 893
SacI GAGCTC 1 cut(s) 561
SalI GTCGAC 1 cut(s) 845
SaqAI TTAA 1 cut(s) 1035
SatI GCNGC 6 cut(s) 236, 239, 242, 421, 490, 547
Sau3AI GATC 7 cut(s) 175, 199, 654, 684, 733, 810, 897
Sau96I GGNCC 3 cut(s) 257, 296, 952
SchI GAGTC 2 cut(s) 140, 1021
ScrFI CCNGG 3 cut(s) 261, 663, 695
SduI GDGCHC 2 cut(s) 368, 561
SfaNI GCATC 3 cut(s) 238, 598, 882
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 2 cut(s) 296, 952
SmiMI CAYNNNNRTG 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 4 cut(s) 600, 747, 983, 1032
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 9 cut(s) 236, 239, 242, 264, 405, 414, 420, 490, 615
SspI AATATT 1 cut(s) 1043
SspMI CTAG 2 cut(s) 818, 860
SstI GAGCTC 1 cut(s) 561
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 259, 661, 693
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 296, 844
TaiI ACGT 1 cut(s) 692
TaqI TCGA 3 cut(s) 362, 593, 846
TasI AATT 4 cut(s) 600, 747, 983, 1032
TauI GCSGC 5 cut(s) 238, 241, 244, 423, 492
TfiI GAWTC 3 cut(s) 312, 724, 978
Tru1I TTAA 1 cut(s) 1035
Tru9I TTAA 1 cut(s) 1035
TscAI CASTG 2 cut(s) 636, 847
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 4 cut(s) 101, 465, 599, 733
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 2 cut(s) 636, 847
Tth111I GACNNNGTC 1 cut(s) 794
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 296, 952
XapI RAATTY 1 cut(s) 983
XceI RCATGY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 846
XspI CTAG 2 cut(s) 818, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.