Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Reverse (-)

88329581 .. 88331809

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTGTAGATTACTACAAGCTTTTACAGGTAGACAAGAGCGCCACAGAAGATGAACTGAAGAAGGCTTACAGAAAATTGGCTATGAAGTGGCACCCTGATAAGAACCCCACCAACAAGAAAGAAGCTGAGACCAAATTCAAGCAGATCTCTGAGGCCTATGAGATTTTAATAGCGGAATTCAAGTTTATATGTATGCTAGGATCTGATCCTGATTCTTTGGATTTGCAGGTTCTGAGTGATCCACAGAAAAGAGCAATCTATGATCAGTATGGTGAAGAAGGCCTTAAAGGCGGCATTCCGCCTCCAGATGCTGGGGGGCCTGGGGGTGCCACGTATTTCCAAACTGGAGATGGTCCAAATGTGTTTAGATTCAACCCCAGGAATGCCAACGACATTTTTGCGGAGATCTTCGGGTTCTCTAGCCCGATGGGTGGTGGAATGGGAGGAGGTGGTTTTGGTAGTGGCATGAGGGGTGGAAGATCATCCTTTGGTGGAATGTTTGGGGATGACATGTTTAGTTCTTTTGGAGAAGGCCGACCGATGAGTCAGGGACCAAGAAAAGCGTCTCCTTTGGAGAGGAAGTTGCCATGTAGTCTTGAGGAGCTCTATAAGGGAACCACAAAGAAGATGAAGATATCTAGGGAAATTGCAGATGCAAGTGGGAGGACATTGCCGGTGGAAGAAATCTTAACCATTGAGGTCAAGCCTGGCTGGAAAAAAGGAACAAAGATCACTTTCCCAGAGAAGGGGAATGAGCGTCCAAATGAAGTTCCTGCAGATCTTGTATTCATAATCGATGAGAAACCACACAGCACATTCACAAGGGATGGGAACGACCTGGTGGTAACACAGAAGATCTCGCTGGCAGAAGCACTAGCAGGTTGCACACTGCATCTCACCACACTAGATGGGAGGACCCTCACCATCCCCATCAACACTGTCATTCATCCAAACTACGAGGAGATAGTCCCTCGGGAGGGTATGCCTGTTCCAAAAGATCCCTCCAAGAAGGGCAACCTTAGAGTGAAATTCAACATCAAATTTCCAACTAGGTTGACTTCTGAACAGAAGGCTGGAATCAAGAAACTTTTGGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

367

Amino Acids

40.29

Weight (kDa)

8.69

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 59	9.7e-23	DnaJ domain
DnaJ_C	PF01556	193 - 350	1.2e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	546
Acc36I	ACCTGC	2 cut(s)	220, 872
AccB1I	GGYRCC	2 cut(s)	93, 329
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	4 cut(s)	176, 294, 302, 404
AclWI	GGATC	4 cut(s)	203, 211, 236, 995
AcsI	RAATTY	4 cut(s)	137, 179, 1031, 1043
AcuI	CTGAAG	1 cut(s)	80
AfiI	CCNNNNNNNGG	6 cut(s)	314, 434, 748, 749, 979, 980
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	4 cut(s)	142, 184, 376, 1036
AjnI	CCWGG	4 cut(s)	322, 380, 709, 840
AluBI	AGCT	3 cut(s)	22, 128, 607
AluI	AGCT	3 cut(s)	22, 128, 607
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	2 cut(s)	125, 573
AlwI	GGATC	4 cut(s)	203, 211, 236, 995
AlwNI	CAGNNNCTG	2 cut(s)	235, 314
Ama87I	CYCGRG	1 cut(s)	975
AoxI	GGCC	4 cut(s)	156, 283, 320, 535
ApeKI	GCWGC	1 cut(s)	1097
ApoI	RAATTY	4 cut(s)	137, 179, 1031, 1043
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	4 cut(s)	320, 356, 554, 918
AsuHPI	GGTGA	3 cut(s)	287, 892, 916
AvaI	CYCGRG	1 cut(s)	975
AvaII	GGWCC	3 cut(s)	356, 554, 918
BanI	GGYRCC	2 cut(s)	93, 329
BanII	GRGCYC	1 cut(s)	609
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	1084
BccI	CCATC	6 cut(s)	347, 424, 824, 905, 935, 941
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	4 cut(s)	324, 382, 711, 842
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	125, 573
BfaI	CTAG	6 cut(s)	200, 423, 642, 878, 908, 1053
BfmI	CTRYAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	2 cut(s)	220, 872
BglI	GCCNNNNNGGC	1 cut(s)	291
BglII	AGATCT	4 cut(s)	147, 408, 781, 858
BisI	GCNGC	2 cut(s)	295, 1098
BlsI	GCNGC	2 cut(s)	296, 1099
Bme1390I	CCNGG	4 cut(s)	324, 382, 711, 842
Bme18I	GGWCC	3 cut(s)	356, 554, 918
BmeT110I	CYCGRG	1 cut(s)	975
BmgT120I	GGNCC	4 cut(s)	320, 356, 554, 918
BmiI	GGNNCC	6 cut(s)	95, 321, 331, 555, 619, 920
BmrFI	CCNGG	4 cut(s)	324, 382, 711, 842
BmsI	GCATC	3 cut(s)	301, 646, 904
BpmI	CTGGAG	2 cut(s)	291, 369
BpuEI	CTTGAG	1 cut(s)	620
Bsa29I	ATCGAT	1 cut(s)	798
BsaAI	YACGTR	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	323, 380, 974
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	6 cut(s)	314, 434, 748, 749, 979, 980
Bse118I	RCCGGY	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	671
BseBI	CCWGG	4 cut(s)	324, 382, 711, 842
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	3 cut(s)	323, 380, 974
BseGI	GGATG	5 cut(s)	485, 514, 835, 927, 949
BseLI	CCNNNNNNNGG	6 cut(s)	314, 434, 748, 749, 979, 980
BseMI	GCAATG	1 cut(s)	671
BseMII	CTCAG	3 cut(s)	120, 144, 227
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	3 cut(s)	462, 617, 977
BseXI	GCAGC	1 cut(s)	1084
BseYI	CCCAGC	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	4 cut(s)	158, 285, 322, 537
BshNI	GGYRCC	2 cut(s)	93, 329
BshVI	ATCGAT	1 cut(s)	798
BsiEI	CGRYCG	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	975
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	2 cut(s)	567, 956
BslI	CCNNNNNNNGG	6 cut(s)	314, 434, 748, 749, 979, 980
BsmAI	GTCTC	2 cut(s)	125, 573
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	2 cut(s)	567, 956
BsmI	GAATGC	2 cut(s)	297, 391
BsnI	GGCC	4 cut(s)	158, 285, 322, 537
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	975
Bsp1286I	GDGCHC	1 cut(s)	609
BspACI	CCGC	4 cut(s)	176, 294, 302, 404
BspANI	GGCC	4 cut(s)	158, 285, 322, 537
BspCNI	CTCAG	3 cut(s)	121, 145, 228
BspDI	ATCGAT	1 cut(s)	798
BspLI	GGNNCC	6 cut(s)	95, 321, 331, 555, 619, 920
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	2 cut(s)	220, 872
BspPI	GGATC	4 cut(s)	203, 211, 236, 995
BspT107I	GGYRCC	2 cut(s)	93, 329
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	671
BsrFI	RCCGGY	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	3 cut(s)	323, 380, 974
Bst2UI	CCWGG	4 cut(s)	324, 382, 711, 842
Bst4CI	ACNGT	1 cut(s)	943
BstBAI	YACGTR	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	867
BstDEI	CTNAG	4 cut(s)	129, 153, 236, 1022
BstF5I	GGATG	5 cut(s)	485, 514, 835, 927, 949
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstMAI	GTCTC	2 cut(s)	125, 573
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	4 cut(s)	324, 382, 711, 842
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	4 cut(s)	322, 380, 709, 840
BstSFI	CTRYAG	1 cut(s)	777
BstV1I	GCAGC	1 cut(s)	1084
BstX2I	RGATCY	6 cut(s)	147, 203, 408, 781, 858, 1000
BstYI	RGATCY	6 cut(s)	147, 203, 408, 781, 858, 1000
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	4 cut(s)	158, 285, 322, 537
BsuTUI	ATCGAT	1 cut(s)	798
BtsCI	GGATG	5 cut(s)	485, 514, 835, 927, 949
BtsI	GCAGTG	1 cut(s)	890
BtsIMutI	CAGTG	2 cut(s)	890, 939
BveI	ACCTGC	2 cut(s)	220, 872
Cac8I	GCNNGC	1 cut(s)	867
CaiI	CAGNNNCTG	2 cut(s)	235, 314
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	4 cut(s)	320, 356, 554, 918
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	2 cut(s)	555, 749
CsiI	ACCWGGT	1 cut(s)	840
CviAII	CATG	3 cut(s)	469, 514, 591
DdeI	CTNAG	4 cut(s)	129, 153, 236, 1022
DrdI	GACNNNNNNGTC	1 cut(s)	546
DseDI	GACNNNNNNGTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	607
Eco147I	AGGCCT	2 cut(s)	158, 285
Eco24I	GRGCYC	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	639
Eco47I	GGWCC	3 cut(s)	356, 554, 918
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	975
EcoICRI	GAGCTC	1 cut(s)	607
EcoO109I	RGGNCCY	2 cut(s)	320, 918
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	4 cut(s)	322, 380, 709, 840
EcoRV	GATATC	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	3 cut(s)	472, 517, 594
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	567, 956
FatI	CATG	3 cut(s)	468, 513, 590
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	295, 1098
FokI	GGATG	5 cut(s)	472, 521, 842, 914, 936
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	2 cut(s)	295, 1098
FspBI	CTAG	6 cut(s)	200, 423, 642, 878, 908, 1053
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	295, 1098
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	2 cut(s)	291, 369
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	4 cut(s)	158, 285, 322, 537
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	2 cut(s)	555, 749
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	472, 517, 594
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	1059
HindII	GTYRAC	1 cut(s)	1059
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	215, 372, 547, 1080
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	3 cut(s)	287, 892, 916
Hpy166II	GTNNAC	2 cut(s)	34, 1059
Hpy188I	TCNGA	4 cut(s)	154, 208, 237, 1066
Hpy188III	TCNNGA	5 cut(s)	212, 308, 599, 977, 1084
Hpy8I	GTNNAC	2 cut(s)	34, 1059
HpyAV	CCTTC	6 cut(s)	58, 275, 527, 742, 1006, 1066
HpyCH4III	ACNGT	1 cut(s)	943
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	7 cut(s)	229, 653, 659, 779, 888, 895, 1100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	4 cut(s)	129, 153, 236, 1022
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	472, 517, 594
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	1 cut(s)	1084
LweI	GCATC	3 cut(s)	301, 646, 904
MabI	ACCWGGT	1 cut(s)	840
MaeI	CTAG	6 cut(s)	200, 423, 642, 878, 908, 1053
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	847
MboII	GAAGA	9 cut(s)	62, 73, 290, 403, 492, 640, 646, 695, 868
MflI	RGATCY	6 cut(s)	147, 203, 408, 781, 858, 1000
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	6 cut(s)	77, 137, 179, 648, 1031, 1043
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	1073
MseI	TTAA	3 cut(s)	170, 288, 692
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	4 cut(s)	324, 382, 711, 842
Mva1269I	GAATGC	2 cut(s)	297, 391
MvaI	CCWGG	4 cut(s)	324, 382, 711, 842
MwoI	GCNNNNNNNGC	1 cut(s)	291
NlaIII	CATG	3 cut(s)	472, 517, 594
NlaIV	GGNNCC	6 cut(s)	95, 321, 331, 555, 619, 920
NspI	RCATGY	1 cut(s)	517
PceI	AGGCCT	2 cut(s)	158, 285
PciI	ACATGT	1 cut(s)	513
PctI	GAATGC	2 cut(s)	297, 391
PfeI	GAWTC	3 cut(s)	215, 372, 1080
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	296, 1099
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
Ppu21I	YACGTR	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	918
PscI	ACATGT	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	918
Psp6I	CCWGG	4 cut(s)	322, 380, 709, 840
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	4 cut(s)	322, 380, 709, 840
PspN4I	GGNNCC	6 cut(s)	95, 321, 331, 555, 619, 920
PspPI	GGNCC	4 cut(s)	320, 356, 554, 918
PspPPI	RGGWCCY	1 cut(s)	918
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	2 cut(s)	235, 314
PsuI	RGATCY	6 cut(s)	147, 203, 408, 781, 858, 1000
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	170, 288, 692
SatI	GCNGC	2 cut(s)	295, 1098
Sau96I	GGNCC	4 cut(s)	320, 356, 554, 918
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	4 cut(s)	324, 382, 711, 842
SduI	GDGCHC	1 cut(s)	609
SexAI	ACCWGGT	1 cut(s)	840
SfaNI	GCATC	3 cut(s)	301, 646, 904
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	3 cut(s)	356, 554, 918
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	6 cut(s)	77, 137, 179, 648, 1031, 1043
SseBI	AGGCCT	2 cut(s)	158, 285
SsiI	CCGC	4 cut(s)	176, 294, 302, 404
SspMI	CTAG	6 cut(s)	200, 423, 642, 878, 908, 1053
SstI	GAGCTC	1 cut(s)	609
StuI	AGGCCT	2 cut(s)	158, 285
StyD4I	CCNGG	4 cut(s)	322, 380, 709, 840
TaaI	ACNGT	1 cut(s)	943
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	1 cut(s)	798
TaqII	GACCGA	1 cut(s)	556
TasI	AATT	6 cut(s)	77, 137, 179, 648, 1031, 1043
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	215, 372, 1080
Tru1I	TTAA	3 cut(s)	170, 288, 692
Tru9I	TTAA	3 cut(s)	170, 288, 692
TscAI	CASTG	2 cut(s)	897, 946
TseI	GCWGC	1 cut(s)	1097
TspDTI	ATGAA	6 cut(s)	69, 101, 647, 781, 783, 938
TspRI	CASTG	2 cut(s)	897, 946
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	3 cut(s)	356, 554, 918
XapI	RAATTY	4 cut(s)	137, 179, 1031, 1043
XceI	RCATGY	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	6 cut(s)	200, 423, 642, 878, 908, 1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.