Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Forward (+)

14073008 .. 14075271

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGAGTTGATTATTACAAGGTTTTACAGGTTGATAGAAGCGCTAACGACGATGACCTTAAGAAAGCTTATAGAAAACTCGCTATGAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGACGCTGAGGCTAAGTTCAAGCAGATCTCTGAGGCCTACGATGTTCTTAGCGATCCTCAAAAGAGAGCTGTATATGATCAATACGGTGAGGAAGGGTTAAAAGGGAATGTGCCACCTCCCAATGCTGCTACTAGTGGAGCATCCTACTTCTCAACAGGAGATGGATCTTCGTCTTTCAGATTCAACCCGAGAAGTGCAGATGATATATTCGCTGAGTTTTTCGGGTTCTCGACCCCGTTTGGTGGCGGTGGTGGTGGCACTGGAGGGCAGAGATTCGCTAGCCGCATGTTTGGTGATGATATGTATGCCTCGTTTGGTGAAGGAGCAGGTGGAGGAGGAGCTATGCATCATCATCACCATCATCATCATCACGCTGCAGCTAGGAAAGTGGCTCCTATCGAGAACAAGTTGCCTTGTAGCCTTGAAGATCTCTACAAAGGAACCACCAAGAAGATGAAGATCTCCAGGGAGATTGTAGATGTCAGCGGTAAGGCAATGCAAGTGGAAGAGATTCTAACGATTGGAGTGAAACCCGGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCATCCAGGTGTGATTCCAGCGGATCTAGTCTTCATCATTGACGAGAAACCCCATCCAGTGTTTACCCGTGAGGGCAACGACCTGATTGTCACACAGAAAGTCTCACTAGCTGATGCCTTAACAGGCTACACCGCAAACATAGCGACCCTTGATGGCCGTACACTTACAATCCCGATCACAAATGTGATCCATCCAGAGTATGAAGAGGTGGTTCCTAAAGAGGGAATGCCACTCCAGAAAGATCAGACAAAGAAAGGGAACTTAAGGATCAAGTTCAATATCAAGTTTCCAGCGAGATTAACTGCGGAACAGAAAGCTGGGTTTAAGAAGCTTATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

348

Amino Acids

38.19

Weight (kDa)

8.92

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	2.2e-27	DnaJ domain
DnaJ_C	PF01556	174 - 332	3.1e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
AasI	GACNNNNNNGTC	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	440
AciI	CCGC	6 cut(s)	369, 406, 609, 725, 837, 1010
AclWI	GGATC	5 cut(s)	170, 295, 735, 886, 980
AcoI	YGGCCR	1 cut(s)	859
AfaI	GTAC	1 cut(s)	865
AfeI	AGCGCT	1 cut(s)	43
AfiI	CCNNNNNNNGG	3 cut(s)	365, 695, 926
AflII	CTTAAG	2 cut(s)	59, 967
AgsI	TTSAA	4 cut(s)	142, 307, 548, 982
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	587, 709
AleI	CACNNNNGTG	1 cut(s)	887
AluBI	AGCT	7 cut(s)	68, 191, 464, 503, 815, 1022, 1036
AluI	AGCT	7 cut(s)	68, 191, 464, 503, 815, 1022, 1036
Alw26I	GTCTC	1 cut(s)	811
AlwI	GGATC	5 cut(s)	170, 295, 735, 886, 980
Ama87I	CYCGRG	2 cut(s)	310, 656
Aor51HI	AGCGCT	1 cut(s)	43
AoxI	GGCC	2 cut(s)	156, 859
ApeKI	GCWGC	3 cut(s)	248, 497, 500
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	657, 658
AsuHPI	GGTGA	4 cut(s)	221, 428, 452, 470
AsuNHI	GCTAGC	1 cut(s)	401
AvaI	CYCGRG	2 cut(s)	310, 656
BbsI	GAAGAC	1 cut(s)	727
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	235, 484, 512
BccI	CCATC	5 cut(s)	278, 489, 765, 851, 903
BceAI	ACGGC	1 cut(s)	846
BciT130I	CCWGG	2 cut(s)	589, 711
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	657, 658
BcoDI	GTCTC	1 cut(s)	811
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	5 cut(s)	255, 402, 504, 731, 812
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	45
BfrI	CTTAAG	2 cut(s)	59, 967
BfuAI	ACCTGC	1 cut(s)	440
BglII	AGATCT	3 cut(s)	147, 550, 582
BisI	GCNGC	4 cut(s)	249, 406, 498, 501
BlsI	GCNGC	4 cut(s)	250, 407, 499, 502
Bme1390I	CCNGG	4 cut(s)	589, 657, 658, 711
BmeT110I	CYCGRG	2 cut(s)	310, 656
BmiI	GGNNCC	3 cut(s)	516, 565, 918
BmrFI	CCNGG	4 cut(s)	589, 657, 658, 711
BmsI	GCATC	5 cut(s)	103, 272, 478, 715, 808
BmtI	GCTAGC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	727
BpmI	CTGGAG	3 cut(s)	405, 571, 923
Bpu10I	CCTNAGC	1 cut(s)	129
BpuMI	CCSGG	2 cut(s)	657, 658
BsaBI	GATNNNNATC	1 cut(s)	581
BsaJI	CCNNGG	2 cut(s)	588, 656
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 695, 926
Bse1I	ACTGG	2 cut(s)	388, 761
Bse3DI	GCAATG	2 cut(s)	624, 706
Bse8I	GATNNNNATC	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	589, 711
BseDI	CCNNGG	2 cut(s)	588, 656
BseGI	GGATG	5 cut(s)	94, 263, 706, 757, 895
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	3 cut(s)	365, 695, 926
BseMI	GCAATG	2 cut(s)	624, 706
BseMII	CTCAG	3 cut(s)	120, 144, 327
BseNI	ACTGG	2 cut(s)	388, 761
BseRI	GAGGAG	2 cut(s)	471, 474
BseXI	GCAGC	3 cut(s)	235, 484, 512
BseYI	CCCAGC	1 cut(s)	1022
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	158, 861
BsiHKCI	CYCGRG	2 cut(s)	310, 656
BsiSI	CCGG	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	365, 695, 926
BsmAI	GTCTC	1 cut(s)	811
BsmI	GAATGC	1 cut(s)	936
BsnI	GGCC	2 cut(s)	158, 861
BsoBI	CYCGRG	2 cut(s)	310, 656
BspACI	CCGC	6 cut(s)	369, 406, 609, 725, 837, 1010
BspANI	GGCC	2 cut(s)	158, 861
BspCNI	CTCAG	3 cut(s)	121, 145, 328
BspLI	GGNNCC	3 cut(s)	516, 565, 918
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	440
BspOI	GCTAGC	1 cut(s)	405
BspPI	GGATC	5 cut(s)	170, 295, 735, 886, 980
BspTI	CTTAAG	2 cut(s)	59, 967
BsrDI	GCAATG	2 cut(s)	624, 706
BsrI	ACTGG	2 cut(s)	388, 761
BssECI	CCNNGG	2 cut(s)	588, 656
Bst2UI	CCWGG	2 cut(s)	589, 711
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	2 cut(s)	624, 903
BstAFI	CTTAAG	2 cut(s)	59, 967
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	5 cut(s)	129, 135, 153, 170, 336
BstF5I	GGATG	5 cut(s)	94, 263, 706, 757, 895
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	811
BstMWI	GCNNNNNNNGC	1 cut(s)	845
BstNI	CCWGG	2 cut(s)	589, 711
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	4 cut(s)	587, 655, 656, 709
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	3 cut(s)	235, 484, 512
BstV2I	GAAGAC	1 cut(s)	727
BstX2I	RGATCY	5 cut(s)	147, 287, 550, 582, 727
BstYI	RGATCY	5 cut(s)	147, 287, 550, 582, 727
BsuRI	GGCC	2 cut(s)	158, 861
BtsCI	GGATG	5 cut(s)	94, 263, 706, 757, 895
BtsIMutI	CAGTG	2 cut(s)	381, 768
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	44
Cfr9I	CCCGGG	1 cut(s)	656
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	864
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	1 cut(s)	864
DdeI	CTNAG	5 cut(s)	129, 135, 153, 170, 336
DrdI	GACNNNNNNGTC	1 cut(s)	791
DseDI	GACNNNNNNGTC	1 cut(s)	791
EaeI	YGGCCR	1 cut(s)	859
Eam1104I	CTCTTC	2 cut(s)	624, 903
EarI	CTCTTC	2 cut(s)	624, 903
Eco147I	AGGCCT	1 cut(s)	158
Eco47III	AGCGCT	1 cut(s)	43
Eco88I	CYCGRG	2 cut(s)	310, 656
EcoRII	CCWGG	2 cut(s)	587, 709
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	1 cut(s)	412
FatI	CATG	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	249, 406, 498, 501
FokI	GGATG	5 cut(s)	81, 250, 693, 744, 882
Fsp4HI	GCNGC	4 cut(s)	249, 406, 498, 501
FspBI	CTAG	5 cut(s)	255, 402, 504, 731, 812
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	249, 406, 498, 501
GsaI	CCCAGC	1 cut(s)	1026
GsuI	CTGGAG	3 cut(s)	405, 571, 923
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	158, 861
HapII	CCGG	1 cut(s)	657
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	2 cut(s)	66, 1034
HinfI	GANTC	4 cut(s)	303, 396, 634, 718
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	4 cut(s)	221, 428, 452, 470
Hpy166II	GTNNAC	2 cut(s)	768, 866
Hpy188I	TCNGA	3 cut(s)	154, 302, 951
Hpy188III	TCNNGA	6 cut(s)	98, 352, 523, 877, 899, 940
Hpy8I	GTNNAC	2 cut(s)	768, 866
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	209, 437
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	320, 469, 500, 622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	845
HpyF3I	CTNAG	5 cut(s)	129, 135, 153, 170, 336
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	199
LmnI	GCTCC	4 cut(s)	260, 446, 461, 520
Lsp1109I	GCAGC	3 cut(s)	235, 484, 512
LweI	GCATC	5 cut(s)	103, 272, 478, 715, 808
MaeI	CTAG	5 cut(s)	255, 402, 504, 731, 812
MaeIII	GTNAC	1 cut(s)	793
MboII	GAAGA	8 cut(s)	282, 560, 586, 592, 641, 676, 727, 920
MflI	RGATCY	5 cut(s)	147, 287, 550, 582, 727
Mph1103I	ATGCAT	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	6 cut(s)	60, 221, 824, 968, 1004, 1029
MslI	CAYNNNNRTG	2 cut(s)	711, 887
MspA1I	CMGCKG	2 cut(s)	609, 725
MspCI	CTTAAG	2 cut(s)	59, 967
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	4 cut(s)	589, 657, 658, 711
Mva1269I	GAATGC	1 cut(s)	936
MvaI	CCWGG	2 cut(s)	589, 711
MwoI	GCNNNNNNNGC	1 cut(s)	845
NciI	CCSGG	2 cut(s)	657, 658
NheI	GCTAGC	1 cut(s)	401
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	3 cut(s)	516, 565, 918
NmuCI	GTSAC	1 cut(s)	793
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	887
PaqCI	CACCTGC	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	158
PctI	GAATGC	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	303, 396, 634, 718
PkrI	GCNGC	4 cut(s)	250, 407, 499, 502
Psp6I	CCWGG	2 cut(s)	587, 709
PspFI	CCCAGC	1 cut(s)	1022
PspGI	CCWGG	2 cut(s)	587, 709
PspN4I	GGNNCC	3 cut(s)	516, 565, 918
PstI	CTGCAG	1 cut(s)	502
PsuI	RGATCY	5 cut(s)	147, 287, 550, 582, 727
RsaI	GTAC	1 cut(s)	865
RsaNI	GTAC	1 cut(s)	864
RseI	CAYNNNNRTG	2 cut(s)	711, 887
SaqAI	TTAA	6 cut(s)	60, 221, 824, 968, 1004, 1029
SatI	GCNGC	4 cut(s)	249, 406, 498, 501
ScrFI	CCNGG	4 cut(s)	589, 657, 658, 711
SfaNI	GCATC	5 cut(s)	103, 272, 478, 715, 808
SfcI	CTRYAG	1 cut(s)	498
SmaI	CCCGGG	1 cut(s)	658
SmiMI	CAYNNNNRTG	2 cut(s)	711, 887
SmlI	CTYRAG	2 cut(s)	59, 967
SmoI	CTYRAG	2 cut(s)	59, 967
SpeI	ACTAGT	1 cut(s)	254
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	6 cut(s)	369, 406, 609, 725, 837, 1010
SspMI	CTAG	5 cut(s)	255, 402, 504, 731, 812
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	4 cut(s)	587, 655, 656, 709
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	353, 522
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	4 cut(s)	303, 396, 634, 718
Tru1I	TTAA	6 cut(s)	60, 221, 824, 968, 1004, 1029
Tru9I	TTAA	6 cut(s)	60, 221, 824, 968, 1004, 1029
TscAI	CASTG	2 cut(s)	388, 768
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	3 cut(s)	248, 497, 500
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	4 cut(s)	101, 593, 727, 921
TspMI	CCCGGG	1 cut(s)	656
TspRI	CASTG	2 cut(s)	388, 768
Vha464I	CTTAAG	2 cut(s)	59, 967
XceI	RCATGY	1 cut(s)	412
XmaI	CCCGGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	5 cut(s)	255, 402, 504, 731, 812
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.