MD10G1289200.v1.1

DnaJ homolog subfamily B member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
37830774 .. 37833038
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1289200.v1.1.491

Sequence Viewer

Length: 1035 bp
ATGGGTGTGGATTACTACAAGCTTCTGCAGGTGGACAAGAACGCCAGCGACGACGATTTGAAGAAAGCTTACAGAAAGCTCGCCATGAAGTGGCACCCTGATAAGAACCCCACCAACAAGAAGGAAGCCGAGTCCAAGTTCAAACAGATCTCTGAGGCCTACGAGGTTCTGAGTGATCCCCAGAAAAGAGCAATTTATGATCAATACGGAGAAGAAGGCCTGAAAGGCCAAGTGCCGCCGCCGGATGCCGGTGGGCCTGGCGGTGGAGCTACCTTCTTCCAAACTGGGGACGGTCCAAATGTGTTTAGATTCAACCCCAGAAACGCCGACGACATTTTTGCTGATTTCTTTGGGTTCTCGAGCCCCATGGGTGGAATGGGAGGCGGAATGGGCGGTGGCGGCATGAGGGGTGGAAGGTCTTTTGGTGGAATGTTTGGGGAGGACGTGTTCAGTTCATTCGGAGAAGGCCGGCCCATGAGTCATGCGCCACGAAAAGCTCCACCTATAGAGAAGAGGTTGCCTTGCAGCCTTGAGGAGCTGTACAAGGGGACTACCAAGAAGATGAAGATTTCGAGGGAAATCGCAGATGCAAGCGGGAAGACCATGCAAGTGGAGGAAATACTAACCATAGAAATCAAGCCTGGCTGGAAAAAGGGAACCAAAATCACCTTCCCGGAGAAAGGGAACGAGCAAGGAAACATAACTCCTGCGGATCTTGTGTTCATAATCGACGAGAAACCACACAGCACATTCACAAGGGATGGGAATGATCTTATTGTCACGCAGAGGATTACTCTAGCAGAAGCTCTAACAGGTTACACTGTCCGCCTGACCACCCTAGATGGAAGGAGCCTCACCATCCCCATCAACAATGTGATTAGTCCAGACTATGAGGAGGTAGTCCCTAGGGAGGGCATGCCCATACCCAAAGACCCCTCCAAGAAGGGTAACCTCAGAATCAAATTCAACATCAAGTTTCCGACAAGATTGAATGCCGAACAGAAGGCCGGAATTAAGAAATGCTTGCAGGCTTGA

Protein Analysis

345

Amino Acids

37.86

Weight (kDa)

9.01

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 4 - 67 1.8e-28 DnaJ domain
DnaJ_C PF01556 169 - 327 5.8e-41 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 9 cut(s) 236, 239, 261, 384, 393, 399, 594, 710, 826
AclWI GGATC 2 cut(s) 170, 720
AcsI RAATTY 1 cut(s) 962
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 8 cut(s) 90, 248, 263, 286, 371, 680, 910, 911
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 5 cut(s) 61, 142, 313, 967, 991
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 2 cut(s) 256, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AloI GAACNNNNNNTCC 4 cut(s) 431, 463, 704, 736
AluBI AGCT 7 cut(s) 22, 68, 79, 269, 497, 538, 806
AluI AGCT 7 cut(s) 22, 68, 79, 269, 497, 538, 806
AlwI GGATC 2 cut(s) 170, 720
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 7 cut(s) 156, 217, 226, 254, 466, 470, 1005
ApeKI GCWGC 1 cut(s) 525
ApoI RAATTY 1 cut(s) 962
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AspA2I CCTAGG 1 cut(s) 905
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 3 cut(s) 254, 293, 471
AsuC2I CCSGG 1 cut(s) 674
AsuHPI GGTGA 2 cut(s) 658, 847
AvaI CYCGRG 1 cut(s) 358
AvaII GGWCC 1 cut(s) 293
AvrII CCTAGG 1 cut(s) 905
BanI GGYRCC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 365
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 1 cut(s) 537
BccI CCATC 4 cut(s) 755, 836, 866, 872
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 2 cut(s) 258, 642
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 674
BfaI CTAG 3 cut(s) 797, 839, 906
BfmI CTRYAG 2 cut(s) 26, 504
BfuAI ACCTGC 1 cut(s) 19
BglI GCCNNNNNGGC 1 cut(s) 225
BglII AGATCT 1 cut(s) 147
BisI GCNGC 4 cut(s) 236, 239, 400, 526
BlnI CCTAGG 1 cut(s) 905
BlsI GCNGC 4 cut(s) 237, 240, 401, 527
Bme1390I CCNGG 3 cut(s) 258, 642, 674
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 358
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 3 cut(s) 254, 293, 471
BmiI GGNNCC 3 cut(s) 95, 658, 851
BmrFI CCNGG 3 cut(s) 258, 642, 674
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 2 cut(s) 235, 577
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 605
BplI GAGNNNNNCTC 2 cut(s) 778, 810
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 366, 905
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 8 cut(s) 90, 248, 263, 286, 371, 680, 910, 911
Bse118I RCCGGY 2 cut(s) 248, 468
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 258, 642
BseDI CCNNGG 2 cut(s) 366, 905
BseGI GGATG 3 cut(s) 250, 766, 858
BseLI CCNNNNNNNGG 8 cut(s) 90, 248, 263, 286, 371, 680, 910, 911
BseMII CTCAG 3 cut(s) 144, 161, 967
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 2 cut(s) 548, 908
BseXI GCAGC 1 cut(s) 537
BshFI GGCC 7 cut(s) 158, 219, 228, 256, 468, 472, 1007
BshNI GGYRCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 5 cut(s) 242, 249, 469, 674, 1008
BslFI GGGAC 3 cut(s) 302, 562, 887
BslI CCNNNNNNNGG 8 cut(s) 90, 248, 263, 286, 371, 680, 910, 911
BsmFI GGGAC 3 cut(s) 302, 562, 887
BsmI GAATGC 1 cut(s) 997
BsnI GGCC 7 cut(s) 158, 219, 228, 256, 468, 472, 1007
BsoBI CYCGRG 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 365
Bsp1407I TGTACA 1 cut(s) 540
Bsp143I GATC 5 cut(s) 147, 175, 199, 712, 769
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 9 cut(s) 236, 239, 261, 384, 393, 399, 594, 710, 826
BspANI GGCC 7 cut(s) 158, 219, 228, 256, 468, 472, 1007
BspCNI CTCAG 3 cut(s) 145, 162, 966
BspLI GGNNCC 3 cut(s) 95, 658, 851
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 2 cut(s) 170, 720
BspT107I GGYRCC 1 cut(s) 93
BsrFI RCCGGY 2 cut(s) 248, 468
BsrGI TGTACA 1 cut(s) 540
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 2 cut(s) 248, 468
BssECI CCNNGG 2 cut(s) 366, 905
BssMI GATC 5 cut(s) 147, 175, 199, 712, 769
BssT1I CCWWGG 2 cut(s) 366, 905
Bst2UI CCWGG 2 cut(s) 258, 642
Bst4CI ACNGT 2 cut(s) 293, 823
Bst6I CTCTTC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 540
BstC8I GCNNGC 7 cut(s) 46, 81, 470, 592, 917, 1025, 1029
BstDEI CTNAG 3 cut(s) 153, 170, 953
BstDSI CCRYGG 1 cut(s) 366
BstEII GGTNACC 1 cut(s) 947
BstF5I GGATG 3 cut(s) 250, 766, 858
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 5 cut(s) 150, 178, 202, 715, 772
BstMBI GATC 5 cut(s) 147, 175, 199, 712, 769
BstMWI GCNNNNNNNGC 3 cut(s) 225, 390, 399
BstNI CCWGG 2 cut(s) 258, 642
BstNSI RCATGY 1 cut(s) 919
BstPI GGTNACC 1 cut(s) 947
BstSCI CCNGG 3 cut(s) 256, 640, 672
BstSFI CTRYAG 2 cut(s) 26, 504
BstV1I GCAGC 1 cut(s) 537
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 2 cut(s) 147, 712
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 2 cut(s) 147, 712
BsuRI GGCC 7 cut(s) 158, 219, 228, 256, 468, 472, 1007
BtgI CCRYGG 1 cut(s) 366
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 3 cut(s) 250, 766, 858
BtsIMutI CAGTG 1 cut(s) 819
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 7 cut(s) 46, 81, 470, 592, 917, 1025, 1029
CfoI GCGC 1 cut(s) 487
Cfr10I RCCGGY 2 cut(s) 248, 468
Cfr13I GGNCC 3 cut(s) 254, 293, 471
Csp6I GTAC 1 cut(s) 541
CviAII CATG 7 cut(s) 85, 367, 403, 475, 482, 604, 916
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 3 cut(s) 153, 170, 953
DpnI GATC 5 cut(s) 149, 177, 201, 714, 771
DpnII GATC 5 cut(s) 147, 175, 199, 712, 769
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
EciI GGCGGA 2 cut(s) 399, 815
Eco130I CCWWGG 2 cut(s) 366, 905
Eco147I AGGCCT 2 cut(s) 158, 219
Eco24I GRGCYC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 358
Eco91I GGTNACC 1 cut(s) 947
EcoO65I GGTNACC 1 cut(s) 947
EcoRII CCWGG 2 cut(s) 256, 640
EcoT14I CCWWGG 2 cut(s) 366, 905
EcoT38I GRGCYC 1 cut(s) 365
ErhI CCWWGG 2 cut(s) 366, 905
FaeI CATG 7 cut(s) 88, 370, 406, 478, 485, 607, 919
FalI AAGNNNNNCTT 1 cut(s) 1007
FaqI GGGAC 3 cut(s) 302, 562, 887
FatI CATG 7 cut(s) 84, 366, 402, 474, 481, 603, 915
FauI CCCGC 1 cut(s) 587
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 236, 239, 400, 526
FokI GGATG 3 cut(s) 257, 773, 845
FriOI GRGCYC 1 cut(s) 365
FseI GGCCGGCC 1 cut(s) 472
Fsp4HI GCNGC 4 cut(s) 236, 239, 400, 526
FspBI CTAG 3 cut(s) 797, 839, 906
GlaI GCGC 1 cut(s) 486
GluI GCNGC 4 cut(s) 236, 239, 400, 526
HaeIII GGCC 7 cut(s) 158, 219, 228, 256, 468, 472, 1007
HapII CCGG 5 cut(s) 242, 249, 469, 674, 1008
HhaI GCGC 1 cut(s) 487
Hin1II CATG 7 cut(s) 88, 370, 406, 478, 485, 607, 919
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HindIII AAGCTT 2 cut(s) 20, 66
HinfI GANTC 4 cut(s) 131, 309, 478, 957
HpaII CCGG 5 cut(s) 242, 249, 469, 674, 1008
HphI GGTGA 2 cut(s) 658, 847
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 5 cut(s) 154, 171, 461, 956, 981
Hpy188III TCNNGA 2 cut(s) 358, 884
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 4 cut(s) 53, 56, 332, 734
HpyAV CCTTC 9 cut(s) 115, 209, 283, 408, 458, 679, 840, 937, 997
HpyCH4III ACNGT 2 cut(s) 293, 823
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 5 cut(s) 28, 525, 590, 607, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 390, 399
HpyF3I CTNAG 3 cut(s) 153, 170, 953
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 7 cut(s) 88, 370, 406, 478, 485, 607, 919
HspAI GCGC 1 cut(s) 485
KroI GCCGGC 1 cut(s) 468
KroNI GCCGGC 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 5 cut(s) 147, 175, 199, 712, 769
LmnI GCTCC 4 cut(s) 266, 502, 535, 849
Lsp1109I GCAGC 1 cut(s) 537
LweI GCATC 2 cut(s) 235, 577
MaeI CTAG 3 cut(s) 797, 839, 906
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 3 cut(s) 778, 815, 947
MalI GATC 5 cut(s) 149, 177, 201, 714, 771
MboI GATC 5 cut(s) 147, 175, 199, 712, 769
MboII GAAGA 7 cut(s) 73, 224, 268, 523, 571, 577, 610
MflI RGATCY 2 cut(s) 147, 712
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 3 cut(s) 192, 962, 1011
MlyI GAGTC 2 cut(s) 140, 487
MmeI TCCRAC 1 cut(s) 1004
MroNI GCCGGC 1 cut(s) 468
MseI TTAA 1 cut(s) 1014
MslI CAYNNNNRTG 1 cut(s) 608
MspI CCGG 5 cut(s) 242, 249, 469, 674, 1008
MspR9I CCNGG 3 cut(s) 258, 642, 674
Mva1269I GAATGC 1 cut(s) 997
MvaI CCWGG 2 cut(s) 258, 642
MwoI GCNNNNNNNGC 3 cut(s) 225, 390, 399
NaeI GCCGGC 1 cut(s) 470
NciI CCSGG 1 cut(s) 674
NcoI CCATGG 1 cut(s) 366
NdeII GATC 5 cut(s) 147, 175, 199, 712, 769
NgoMIV GCCGGC 1 cut(s) 468
NlaIII CATG 7 cut(s) 88, 370, 406, 478, 485, 607, 919
NlaIV GGNNCC 3 cut(s) 95, 658, 851
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 1 cut(s) 919
PaeI GCATGC 1 cut(s) 919
PaeR7I CTCGAG 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 19
PceI AGGCCT 2 cut(s) 158, 219
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 997
PdiI GCCGGC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 309, 957
PflMI CCANNNNNTGG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 672
PkrI GCNGC 4 cut(s) 237, 240, 401, 527
PleI GAGTC 2 cut(s) 139, 486
PpsI GAGTC 2 cut(s) 139, 486
Psp6I CCWGG 2 cut(s) 256, 640
PspEI GGTNACC 1 cut(s) 947
PspGI CCWGG 2 cut(s) 256, 640
PspN4I GGNNCC 3 cut(s) 95, 658, 851
PspPI GGNCC 3 cut(s) 254, 293, 471
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 2 cut(s) 147, 712
RigI GGCCGGCC 1 cut(s) 472
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 1 cut(s) 1014
SatI GCNGC 4 cut(s) 236, 239, 400, 526
Sau3AI GATC 5 cut(s) 147, 175, 199, 712, 769
Sau96I GGNCC 3 cut(s) 254, 293, 471
SchI GAGTC 2 cut(s) 140, 487
ScrFI CCNGG 3 cut(s) 258, 642, 674
SduI GDGCHC 1 cut(s) 365
SfaNI GCATC 2 cut(s) 235, 577
SfcI CTRYAG 2 cut(s) 26, 504
SfiI GGCCNNNNNGGCC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 358
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 2 cut(s) 358, 530
SmoI CTYRAG 2 cut(s) 358, 530
SphI GCATGC 1 cut(s) 919
Sse9I AATT 3 cut(s) 192, 962, 1011
SseBI AGGCCT 2 cut(s) 158, 219
SsiI CCGC 9 cut(s) 236, 239, 261, 384, 393, 399, 594, 710, 826
SspMI CTAG 3 cut(s) 797, 839, 906
StuI AGGCCT 2 cut(s) 158, 219
StyD4I CCNGG 3 cut(s) 256, 640, 672
StyI CCWWGG 2 cut(s) 366, 905
TaaI ACNGT 2 cut(s) 293, 823
TaiI ACGT 1 cut(s) 447
TaqI TCGA 3 cut(s) 359, 572, 729
TasI AATT 3 cut(s) 192, 962, 1011
TatI WGTACW 1 cut(s) 540
TauI GCSGC 3 cut(s) 238, 241, 402
TfiI GAWTC 2 cut(s) 309, 957
Tru1I TTAA 1 cut(s) 1014
Tru9I TTAA 1 cut(s) 1014
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 1 cut(s) 525
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 101, 444, 578, 712
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 826
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 962
XceI RCATGY 1 cut(s) 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 358
XmaJI CCTAGG 1 cut(s) 905
XspI CTAG 3 cut(s) 797, 839, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.