Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Forward (+)

20383628 .. 20387127

Gene Structure 3500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGGGTGGACTACTACAAGATACTGGAGGTCGATAAGAACGCAAAGGATGAGGATTTGGAAAAGGCTTATCGGAAGCTCGCCATGAAATGGCATCCTGACAAGAACCCCAATAACAAGAAACAAGCCGAAGCCAAATTCAAAGAAGTTTCTGAAGCCTACGAGGTTCTGAGTGATCCCCAGAAAAGAGCCGTGTACGATCAGTATGGTGAAGAGGGGCTAAAGGGTCAAGTGCCACCACCTGACTCTGGAGGAGCTTCCTACTTCTCAACTGGAAATGGGCCAACAGGGTTTCATTTTAATCCTAGAAATGCAGATGATATATTTGCCGAGTTTTTTGGCATGGGAGGGTCAGGGTTTACGAGTAGCTTGTTTGGTGATGATGCATTTGCTTTTAGAGAAGGTGTAGGTGGTTCAATGAAACGCGGTGGTCCTCGCAAAGCTTCCCCAGTTGAGAATAGGTTGCCTTGCAGGCTTGAAGAGCTTTATAAAGGAACTAGCAAGAAGATGAAGATATCCCGAGATATTGCTGACACCAGTGGGAAGAGCATGAAGGTGGAGGAAATTCTGACCATTGACATAAAGCCTGGCTGGAAGAAGGGTACTAAAGTTACCTTCCCAGAGAAAGGAAACGAACAGCCAAATGTTATTCCTGCAGATCTTGTTTTCATTATTGACGAGAAGCCACACAGCGTGTTCACTCGTGATGGAAATGACTTGATAGTGACACAAAATGTATCTTTGGTCGAGGCTCTTACTGGCTACACTGTCAATCTCACCACCTTGGACGGTCGGAGATTGACCATCCCCGTCGATAATGTAATTCATCCAAGCTATGAGGAGGTTGTTCAAGGGGAAGGAATGCCAATCCAGAAAGAACCCACAAAAAGAGGTAACCTAAGAATCAAATTCCACATTCACTTCCCAACAAGGGTGACAGCTGAGCAGAAGACTGGAATGAAGAAGTTGTTAGGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

327

Amino Acids

36.33

Weight (kDa)

8.32

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	2.7e-27	DnaJ domain
DnaJ_C	PF01556	152 - 309	1.4e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccII	CGCG	1 cut(s)	426
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	3 cut(s)	137, 564, 908
AcuI	CTGAAG	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	694
AfaI	GTAC	2 cut(s)	197, 604
AfiI	CCNNNNNNNGG	4 cut(s)	90, 248, 626, 931
AgsI	TTSAA	4 cut(s)	142, 417, 479, 851
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	7 cut(s)	79, 257, 369, 443, 484, 834, 941
AluI	AGCT	7 cut(s)	79, 257, 369, 443, 484, 834, 941
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	1 cut(s)	281
ApoI	RAATTY	3 cut(s)	137, 564, 908
AspS9I	GGNCC	2 cut(s)	281, 431
AsuHPI	GGTGA	4 cut(s)	221, 389, 769, 946
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	431
BaeI	ACNNNNGTAYC	2 cut(s)	594, 627
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	956
BccI	CCATC	2 cut(s)	701, 812
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	588
BciVI	GTATCC	1 cut(s)	968
BfaI	CTAG	2 cut(s)	306, 498
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	968
BglI	GCCNNNNNGGC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	658
BlpI	GCTNAGC	1 cut(s)	942
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	281, 431
BmrFI	CCNGG	1 cut(s)	588
BmrI	ACTGGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	103, 373
BmuI	ACTGGG	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	956
BpmI	CTGGAG	2 cut(s)	47, 270
Bpu1102I	GCTNAGC	1 cut(s)	942
BsaJI	CCNNGG	1 cut(s)	783
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 248, 626, 931
Bse1I	ACTGG	6 cut(s)	30, 277, 449, 537, 763, 958
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	4 cut(s)	55, 94, 804, 826
BseLI	CCNNNNNNNGG	4 cut(s)	90, 248, 626, 931
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	6 cut(s)	30, 277, 449, 537, 763, 958
BseRI	GAGGAG	2 cut(s)	267, 854
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	793
BshFI	GGCC	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	793
BsiHKCI	CYCGRG	1 cut(s)	519
BslI	CCNNNNNNNGG	4 cut(s)	90, 248, 626, 931
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	175, 199, 658
Bsp1720I	GCTNAGC	1 cut(s)	942
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	162, 934
BspFNI	CGCG	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	2 cut(s)	474, 539
BsrI	ACTGG	6 cut(s)	30, 277, 449, 537, 763, 958
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	3 cut(s)	175, 199, 658
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	2 cut(s)	769, 791
Bst6I	CTCTTC	3 cut(s)	207, 474, 539
BstC8I	GCNNGC	2 cut(s)	81, 473
BstDEI	CTNAG	3 cut(s)	170, 899, 942
BstEII	GGTNACC	1 cut(s)	893
BstF5I	GGATG	4 cut(s)	55, 94, 804, 826
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	3 cut(s)	178, 202, 661
BstMBI	GATC	3 cut(s)	175, 199, 658
BstMCI	CGRYCG	1 cut(s)	793
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 481
BstNI	CCWGG	1 cut(s)	588
BstPI	GGTNACC	1 cut(s)	893
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	1 cut(s)	654
BstUI	CGCG	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	956
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuI	GTATCC	1 cut(s)	968
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	55, 94, 804, 826
BtsIMutI	CAGTG	2 cut(s)	544, 765
Cac8I	GCNNGC	2 cut(s)	81, 473
Cfr13I	GGNCC	2 cut(s)	281, 431
Csp6I	GTAC	2 cut(s)	196, 603
CviAII	CATG	3 cut(s)	85, 343, 550
CviQI	GTAC	2 cut(s)	196, 603
DdeI	CTNAG	3 cut(s)	170, 899, 942
DpnI	GATC	3 cut(s)	177, 201, 660
DpnII	GATC	3 cut(s)	175, 199, 658
DraIII	CACNNNGTG	1 cut(s)	694
Eam1104I	CTCTTC	3 cut(s)	207, 474, 539
EarI	CTCTTC	3 cut(s)	207, 474, 539
Eco130I	CCWWGG	1 cut(s)	783
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	519
Eco91I	GGTNACC	1 cut(s)	893
EcoO65I	GGTNACC	1 cut(s)	893
EcoRII	CCWGG	1 cut(s)	586
EcoRV	GATATC	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	3 cut(s)	88, 346, 553
FaiI	YATR	8 cut(s)	86, 207, 323, 344, 489, 551, 581, 837
FatI	CATG	3 cut(s)	84, 342, 549
FokI	GGATG	4 cut(s)	62, 81, 791, 813
FspBI	CTAG	2 cut(s)	306, 498
GsuI	CTGGAG	2 cut(s)	47, 270
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	88, 346, 553
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	2 cut(s)	245, 903
HphI	GGTGA	4 cut(s)	221, 389, 769, 946
Hpy166II	GTNNAC	4 cut(s)	10, 196, 360, 699
Hpy188I	TCNGA	5 cut(s)	75, 154, 171, 570, 795
Hpy188III	TCNNGA	5 cut(s)	98, 249, 519, 704, 871
Hpy8I	GTNNAC	4 cut(s)	10, 196, 360, 699
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	5 cut(s)	395, 547, 592, 625, 851
HpyCH4III	ACNGT	2 cut(s)	769, 791
HpyCH4V	TGCA	4 cut(s)	314, 386, 471, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 481
HpyF3I	CTNAG	3 cut(s)	170, 899, 942
Hsp92II	CATG	3 cut(s)	88, 346, 553
Kzo9I	GATC	3 cut(s)	175, 199, 658
LguI	GCTCTTC	2 cut(s)	474, 539
LmnI	GCTCC	1 cut(s)	254
LweI	GCATC	2 cut(s)	103, 373
MaeI	CTAG	2 cut(s)	306, 498
MaeIII	GTNAC	4 cut(s)	610, 724, 893, 934
MalI	GATC	3 cut(s)	177, 201, 660
MboI	GATC	3 cut(s)	175, 199, 658
MboII	GAAGA	8 cut(s)	224, 491, 517, 523, 556, 607, 961, 973
MflI	RGATCY	1 cut(s)	658
MluCI	AATT	4 cut(s)	137, 564, 822, 908
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	773
Mph1103I	ATGCAT	1 cut(s)	388
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	941
MspR9I	CCNGG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	2 cut(s)	472, 481
NdeII	GATC	3 cut(s)	175, 199, 658
NlaIII	CATG	3 cut(s)	88, 346, 553
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	724, 934
NsiI	ATGCAT	1 cut(s)	388
PciSI	GCTCTTC	2 cut(s)	474, 539
PctI	GAATGC	1 cut(s)	867
PfeI	GAWTC	1 cut(s)	903
PflMI	CCANNNNNTGG	1 cut(s)	90
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	586
PspEI	GGTNACC	1 cut(s)	893
PspGI	CCWGG	1 cut(s)	586
PspPI	GGNCC	2 cut(s)	281, 431
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	2 cut(s)	197, 604
RsaNI	GTAC	2 cut(s)	196, 603
RseI	CAYNNNNRTG	1 cut(s)	554
SapI	GCTCTTC	2 cut(s)	474, 539
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	3 cut(s)	175, 199, 658
Sau96I	GGNCC	2 cut(s)	281, 431
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	588
SfaNI	GCATC	2 cut(s)	103, 373
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	137, 564, 822, 908
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	2 cut(s)	306, 498
StyD4I	CCNGG	1 cut(s)	586
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	2 cut(s)	769, 791
TaqI	TCGA	3 cut(s)	33, 747, 813
TasI	AATT	4 cut(s)	137, 564, 822, 908
TfiI	GAWTC	1 cut(s)	903
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	544, 772
TseFI	GTSAC	2 cut(s)	724, 934
Tsp45I	GTSAC	2 cut(s)	724, 934
TspDTI	ATGAA	8 cut(s)	101, 284, 434, 524, 566, 658, 815, 974
TspRI	CASTG	2 cut(s)	544, 772
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	3 cut(s)	137, 564, 908
XspI	CTAG	2 cut(s)	306, 498
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.