Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Reverse (-)

43280456 .. 43283659

Gene Structure 3204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGAGTGGACTACTACAAGATACTCCAGGTCGATAAGAACGCAAAAGATGAGGATTTGAAGAAGGCTTATCGGAAGCTCGCCATGAAATGGCACCCCGACAAGAATCCCAATAACAAGAAACAAGCCGAAGCCAAGTTCAAAGAAGTTTCGGAAGCCTATGAGGTTCTGAGTGATCCCCAGAAAAGAGCAGTGTACGATCAGTATGGTGAAGAGGGGCTAAAGGGTCAAGTGCCACCTCCTGACTTTGGAGGAGCTTCCTACTTTTCAACTGGAAATGGGCCTACAGCGTTTCATTTTAATCCTCGAAATGCAGACGACATATTTGCCGAGTTTTTTGGCACGAGAGGGGGAGGGTTTTCAAGTAGCTTGTTTGGTGATAGTAGCTTCTTTGGTGACGATGCATTTGCTTTTAGAGAAGGTGGAGGTGGTTCAATGAAATACGGTGGTCCTCGCAAAGCTTCTCCAATTGAGAACAGGTTGCCTTGTAGCCTTGAAGAGCTTTACAAAGGAACTAGCAAGAAGATGAAGATATCCAGATATATTGCTGACACCAGTGGGAAGGGCATGGAGGTGGAGGAAATTCTGACCATTGACATAAAACCTGGCTGGAAGAAGGGTACTAAAATTACATTTCCAGAGAAAGGAAATGAACAGCCAAATGTTATTCCTGCAGATCTTGTTTTCATTATTGACGAGAAGCCACACAGCGTGTTCACTCGTGATGGAAATGACTTGATAGTGACACAGAATATATCTTTGGTCGAGGCTCTTACTGGCTACACTGTCAATCTCACCACCCTGGATGGTAGGAGATTAACCATCCCAGTCAATAATGTAATTCATCCAAGCTATGAGGAGGTTGTTCTAGGGGAAGGAATGCCAATCCAGAAAGAACCCACCCAAAGAGGCAAGCTGAGAATAAAATTCAACATCAAGTTCCCAACAAGGTTGACAGCAGAGCAGAAGGCTGGAATCAAGAAGCTTTTAGGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

332

Amino Acids

36.95

Weight (kDa)

8.78

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	5.5e-28	DnaJ domain
DnaJ_C	PF01556	157 - 315	4.6e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	90
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	582, 926
AdeI	CACNNNGTG	1 cut(s)	712
AfaI	GTAC	2 cut(s)	197, 622
AfiI	CCNNNNNNNGG	3 cut(s)	90, 248, 644
AgsI	TTSAA	7 cut(s)	61, 142, 270, 363, 435, 497, 931
AjnI	CCWGG	3 cut(s)	27, 604, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	9 cut(s)	79, 257, 369, 387, 461, 502, 852, 916, 985
AluI	AGCT	9 cut(s)	79, 257, 369, 387, 461, 502, 852, 916, 985
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	582, 926
ArsI	GACNNNNNNTTYG	4 cut(s)	308, 340, 389, 421
AspS9I	GGNCC	2 cut(s)	281, 449
AsuHPI	GGTGA	4 cut(s)	221, 389, 407, 787
AvaII	GGWCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	93
BauI	CACGAG	2 cut(s)	343, 720
BccI	CCATC	3 cut(s)	719, 800, 830
BcgI	CGANNNNNNTGC	4 cut(s)	308, 342, 389, 423
BciT130I	CCWGG	3 cut(s)	29, 606, 803
BciVI	GTATCC	1 cut(s)	986
BfaI	CTAG	2 cut(s)	516, 869
BfmI	CTRYAG	2 cut(s)	285, 672
BfuI	GTATCC	1 cut(s)	986
BglII	AGATCT	1 cut(s)	676
Bme1390I	CCNGG	3 cut(s)	29, 606, 803
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	281, 449
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	3 cut(s)	29, 606, 803
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	821
BpmI	CTGGAG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	801
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 248, 644
Bse1I	ACTGG	4 cut(s)	277, 555, 781, 827
BseBI	CCWGG	3 cut(s)	29, 606, 803
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	3 cut(s)	811, 822, 844
BseLI	CCNNNNNNNGG	3 cut(s)	90, 248, 644
BseMII	CTCAG	2 cut(s)	161, 908
BseNI	ACTGG	4 cut(s)	277, 555, 781, 827
BseRI	GAGGAG	2 cut(s)	267, 872
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	90, 248, 644
BsmI	GAATGC	1 cut(s)	885
BsnI	GGCC	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	175, 199, 676
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	162, 909
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	93
BsrI	ACTGG	4 cut(s)	277, 555, 781, 827
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	3 cut(s)	175, 199, 676
BssSI	CACGAG	2 cut(s)	343, 720
Bst2BI	CACGAG	2 cut(s)	343, 720
Bst2UI	CCWGG	3 cut(s)	29, 606, 803
Bst4CI	ACNGT	2 cut(s)	446, 787
Bst6I	CTCTTC	2 cut(s)	207, 492
BstC8I	GCNNGC	2 cut(s)	81, 914
BstDEI	CTNAG	2 cut(s)	170, 917
BstF5I	GGATG	3 cut(s)	811, 822, 844
BstKTI	GATC	3 cut(s)	178, 202, 679
BstMBI	GATC	3 cut(s)	175, 199, 676
BstNI	CCWGG	3 cut(s)	29, 606, 803
BstSCI	CCNGG	3 cut(s)	27, 604, 801
BstSFI	CTRYAG	2 cut(s)	285, 672
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	986
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	811, 822, 844
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	198, 562, 783
Cac8I	GCNNGC	2 cut(s)	81, 914
Cfr13I	GGNCC	2 cut(s)	281, 449
Csp6I	GTAC	2 cut(s)	196, 621
CviAII	CATG	2 cut(s)	85, 568
CviQI	GTAC	2 cut(s)	196, 621
DdeI	CTNAG	2 cut(s)	170, 917
DpnI	GATC	3 cut(s)	177, 201, 678
DpnII	GATC	3 cut(s)	175, 199, 676
DraIII	CACNNNGTG	1 cut(s)	712
Eam1104I	CTCTTC	2 cut(s)	207, 492
EarI	CTCTTC	2 cut(s)	207, 492
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	27, 604, 801
EcoRV	GATATC	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	406
FaeI	CATG	2 cut(s)	88, 571
FaiI	YATR	9 cut(s)	86, 162, 207, 323, 543, 569, 599, 755, 855
FatI	CATG	2 cut(s)	84, 567
FokI	GGATG	3 cut(s)	809, 818, 831
FspBI	CTAG	2 cut(s)	516, 869
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	88, 571
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	2 cut(s)	459, 983
HinfI	GANTC	2 cut(s)	106, 975
HphI	GGTGA	4 cut(s)	221, 389, 407, 787
Hpy166II	GTNNAC	4 cut(s)	10, 196, 717, 954
Hpy188I	TCNGA	4 cut(s)	75, 154, 171, 588
Hpy188III	TCNNGA	6 cut(s)	242, 537, 638, 722, 889, 979
Hpy8I	GTNNAC	4 cut(s)	10, 196, 717, 954
HpyAV	CCTTC	6 cut(s)	58, 413, 556, 610, 869, 961
HpyCH4III	ACNGT	2 cut(s)	446, 787
HpyCH4V	TGCA	3 cut(s)	314, 404, 674
HpyF3I	CTNAG	2 cut(s)	170, 917
Hsp92II	CATG	2 cut(s)	88, 571
Kzo9I	GATC	3 cut(s)	175, 199, 676
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	254
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	516, 869
MaeIII	GTNAC	2 cut(s)	395, 742
MalI	GATC	3 cut(s)	177, 201, 678
MboI	GATC	3 cut(s)	175, 199, 676
MboII	GAAGA	6 cut(s)	73, 224, 509, 535, 541, 625
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	676
MluCI	AATT	5 cut(s)	468, 582, 627, 840, 926
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	2 cut(s)	300, 818
MslI	CAYNNNNRTG	1 cut(s)	572
MspR9I	CCNGG	3 cut(s)	29, 606, 803
MunI	CAATTG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	885
MvaI	CCWGG	3 cut(s)	29, 606, 803
NdeII	GATC	3 cut(s)	175, 199, 676
NlaIII	CATG	2 cut(s)	88, 571
NlaIV	GGNNCC	1 cut(s)	95
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	395, 742
NsiI	ATGCAT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	106, 975
PflMI	CCANNNNNTGG	1 cut(s)	90
Psp6I	CCWGG	3 cut(s)	27, 604, 801
PspGI	CCWGG	3 cut(s)	27, 604, 801
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	281, 449
PstI	CTGCAG	1 cut(s)	676
PsuI	RGATCY	1 cut(s)	676
RsaI	GTAC	2 cut(s)	197, 622
RsaNI	GTAC	2 cut(s)	196, 621
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	300, 818
Sau3AI	GATC	3 cut(s)	175, 199, 676
Sau96I	GGNCC	2 cut(s)	281, 449
ScrFI	CCNGG	3 cut(s)	29, 606, 803
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	2 cut(s)	285, 672
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse9I	AATT	5 cut(s)	468, 582, 627, 840, 926
SspMI	CTAG	2 cut(s)	516, 869
StyD4I	CCNGG	3 cut(s)	27, 604, 801
TaaI	ACNGT	2 cut(s)	446, 787
TaqI	TCGA	3 cut(s)	33, 307, 765
TasI	AATT	5 cut(s)	468, 582, 627, 840, 926
TfiI	GAWTC	2 cut(s)	106, 975
Tru1I	TTAA	2 cut(s)	300, 818
Tru9I	TTAA	2 cut(s)	300, 818
TscAI	CASTG	3 cut(s)	198, 562, 790
TseFI	GTSAC	2 cut(s)	395, 742
Tsp45I	GTSAC	2 cut(s)	395, 742
TspDTI	ATGAA	7 cut(s)	101, 284, 452, 542, 666, 676, 833
TspRI	CASTG	3 cut(s)	198, 562, 790
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	2 cut(s)	582, 926
XspI	CTAG	2 cut(s)	516, 869
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.