FvH4_3g08630

DnaJ homolog subfamily B member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
5044000 .. 5046097
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08630.t1

Sequence Viewer

Length: 1035 bp
ATGGGTGTGGATTACTACAAGCTTTTACAGGTCGAGAAGAGCGCCACAGAGGATGAGTTGAAGAAGGCGTACAGGAAACTCGCTATGAAATGGCACCCTGATAAGAACCCCACCAATAAGAAAGAAGCTGAGACCAAATTCAAGCAGATCTCTGAGGCCTATGAGGTACTGAGTGATCCCCAGAAAAGAGCAATCTATGATCAGTATGGTGAAGAAGGCCTTAAAGGCCAAATGCCGCCTCCGGATGCTGGTGGGCCTGGTGGTGCTACGTATTTCCAAACCGGGGATGGTCCGAATGTGTTCAGATTCAACCCCAGGAATGCCAATGACATCTTTGCGGAGATATTCGGGTTTTCTAGCCCGATGGGTGGTGGAATGGGAGGAGGTGGTGCTGGTGGTGGCATGAGGGGTGGAAGATCCTTTGGTGGAATGTTTGGGGATGACATGTTCAGTTCTTTTGGAGAAGGCCGACCGATGAGCCACGGACCAAGGAAGGCTTCTCCTTTGGAGAGGAAGTTGCCATGTAGCCTTGAGGAGCTCTATAAGGGAACCACAAAGAAGATGAAGATATCTAGGGAAATTGCAGATGCAAGTGGGAGGACAATGCCTGTCGAGGAAATCCTAACCATTGAGGTCAAGCCTGGCTGGAAAAAAGGAACAAAGATTACTTTCCCAGAGAAAGGGAATGAGCATCCGAATGAAATTCCTGCAGACCTTGTATTCATAATCGATGAGAAACCACACAGCACATTCACAAGGGATGGGAACGACCTAGTCATGACAGAGAGGATCTCGCTGGCAGAGGCTTTAGCAGGTTACACTCTGCAGGTCACCACACTAGATGGGAGGACGCTCACCATCCCCATCAACACTGTCATTCATCCAAACTATGAGGAGATAATTCCTCGAGAGGGTATGCCTATACCAAAAGATCCCTCCAAGAAAGGCAACCTTAGAGTGAAATTCAACATCAAATTTCCAACTAGATTGACTTCTGAACAGAAGGCCGGAATCAAGAAACTTTTGGGTCCATAA

Protein Analysis

345

Amino Acids

37.91

Weight (kDa)

8.95

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 4 - 67 8.3e-29 DnaJ domain
DnaJ_C PF01556 170 - 327 2.3e-40 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 803, 817
AccB1I GGYRCC 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 2 cut(s) 236, 338
AclWI GGATC 4 cut(s) 170, 411, 797, 926
AcsI RAATTY 4 cut(s) 137, 702, 962, 974
AfaI GTAC 2 cut(s) 71, 168
AfiI CCNNNNNNNGG 5 cut(s) 248, 283, 368, 680, 911
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 4 cut(s) 61, 142, 310, 967
AjnI CCWGG 3 cut(s) 256, 314, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 3 cut(s) 22, 128, 538
AluI AGCT 3 cut(s) 22, 128, 538
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 4 cut(s) 170, 411, 797, 926
Ama87I CYCGRG 1 cut(s) 906
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 6 cut(s) 156, 217, 226, 254, 466, 1005
ApoI RAATTY 4 cut(s) 137, 702, 962, 974
Asp700I GAANNNNTTC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 4 cut(s) 254, 290, 485, 1028
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 3 cut(s) 221, 823, 847
AvaI CYCGRG 1 cut(s) 906
AvaII GGWCC 3 cut(s) 290, 485, 1028
BanI GGYRCC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 540
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 540
BccI CCATC 6 cut(s) 281, 358, 755, 836, 866, 872
BciT130I CCWGG 3 cut(s) 258, 316, 642
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 5 cut(s) 357, 573, 773, 839, 984
BfmI CTRYAG 2 cut(s) 708, 824
BfoI RGCGCY 1 cut(s) 45
BfuAI ACCTGC 2 cut(s) 803, 817
BglI GCCNNNNNGGC 1 cut(s) 225
BglII AGATCT 1 cut(s) 147
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 4 cut(s) 258, 283, 316, 642
Bme18I GGWCC 3 cut(s) 290, 485, 1028
BmeT110I CYCGRG 1 cut(s) 906
BmgT120I GGNCC 4 cut(s) 254, 290, 485, 1028
BmiI GGNNCC 3 cut(s) 95, 550, 1029
BmrFI CCNGG 4 cut(s) 258, 283, 316, 642
BmsI GCATC 3 cut(s) 235, 577, 700
BplI GAGNNNNNCTC 2 cut(s) 776, 808
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 283
Bsa29I ATCGAT 1 cut(s) 729
BsaAI YACGTR 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 282, 314, 481, 488
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 283, 368, 680, 911
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 3 cut(s) 258, 316, 642
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 4 cut(s) 282, 314, 481, 488
BseGI GGATG 8 cut(s) 58, 250, 292, 445, 691, 766, 858, 880
BseLI CCNNNNNNNGG 5 cut(s) 248, 283, 368, 680, 911
BseMII CTCAG 3 cut(s) 120, 144, 161
BseRI GAGGAG 3 cut(s) 396, 548, 908
Bsh1285I CGRYCG 1 cut(s) 473
BshFI GGCC 6 cut(s) 158, 219, 228, 256, 468, 1007
BshNI GGYRCC 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 729
BsiEI CGRYCG 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 3 cut(s) 242, 282, 1008
BslI CCNNNNNNNGG 5 cut(s) 248, 283, 368, 680, 911
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 6 cut(s) 158, 219, 228, 256, 468, 1007
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 906
Bsp1286I GDGCHC 1 cut(s) 540
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 6 cut(s) 147, 175, 199, 416, 789, 931
BspACI CCGC 2 cut(s) 236, 338
BspANI GGCC 6 cut(s) 158, 219, 228, 256, 468, 1007
BspCNI CTCAG 3 cut(s) 121, 145, 162
BspDI ATCGAT 1 cut(s) 729
BspEI TCCGGA 1 cut(s) 241
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 3 cut(s) 95, 550, 1029
BspMAI CTGCAG 2 cut(s) 712, 828
BspMI ACCTGC 2 cut(s) 803, 817
BspPI GGATC 4 cut(s) 170, 411, 797, 926
BspQI GCTCTTC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 4 cut(s) 282, 314, 481, 488
BssMI GATC 6 cut(s) 147, 175, 199, 416, 789, 931
BssT1I CCWWGG 1 cut(s) 488
Bst2UI CCWGG 3 cut(s) 258, 316, 642
Bst4CI ACNGT 1 cut(s) 874
Bst6I CTCTTC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 798
BstDEI CTNAG 4 cut(s) 129, 153, 170, 953
BstDSI CCRYGG 1 cut(s) 481
BstEII GGTNACC 1 cut(s) 829
BstF5I GGATG 8 cut(s) 58, 250, 292, 445, 691, 766, 858, 880
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 6 cut(s) 150, 178, 202, 419, 792, 934
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 6 cut(s) 147, 175, 199, 416, 789, 931
BstMCI CGRYCG 1 cut(s) 473
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 3 cut(s) 258, 316, 642
BstNSI RCATGY 1 cut(s) 448
BstPI GGTNACC 1 cut(s) 829
BstSCI CCNGG 4 cut(s) 256, 281, 314, 640
BstSFI CTRYAG 2 cut(s) 708, 824
BstSNI TACGTA 1 cut(s) 270
BstX2I RGATCY 4 cut(s) 147, 416, 789, 931
BstYI RGATCY 4 cut(s) 147, 416, 789, 931
Bsu15I ATCGAT 1 cut(s) 729
BsuRI GGCC 6 cut(s) 158, 219, 228, 256, 468, 1007
BsuTUI ATCGAT 1 cut(s) 729
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 8 cut(s) 58, 250, 292, 445, 691, 766, 858, 880
BtsIMutI CAGTG 1 cut(s) 870
BveI ACCTGC 2 cut(s) 803, 817
Cac8I GCNNGC 1 cut(s) 798
CciI TCATGA 1 cut(s) 777
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 4 cut(s) 254, 290, 485, 1028
ClaI ATCGAT 1 cut(s) 729
CseI GACGC 1 cut(s) 859
Csp6I GTAC 2 cut(s) 70, 167
CviAII CATG 4 cut(s) 403, 445, 522, 778
CviQI GTAC 2 cut(s) 70, 167
DdeI CTNAG 4 cut(s) 129, 153, 170, 953
DpnI GATC 6 cut(s) 149, 177, 201, 418, 791, 933
DpnII GATC 6 cut(s) 147, 175, 199, 416, 789, 931
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 538
Eco105I TACGTA 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 488
Eco147I AGGCCT 2 cut(s) 158, 219
Eco24I GRGCYC 1 cut(s) 540
Eco31I GGTCTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 3 cut(s) 290, 485, 1028
Eco53kI GAGCTC 1 cut(s) 538
Eco88I CYCGRG 1 cut(s) 906
Eco91I GGTNACC 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 538
EcoO65I GGTNACC 1 cut(s) 829
EcoRII CCWGG 3 cut(s) 256, 314, 640
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 488
EcoT38I GRGCYC 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 4 cut(s) 406, 448, 525, 781
FalI AAGNNNNNCTT 6 cut(s) 204, 236, 481, 513, 936, 968
FatI CATG 4 cut(s) 402, 444, 521, 777
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 8 cut(s) 65, 257, 299, 452, 678, 773, 845, 867
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 5 cut(s) 357, 573, 773, 839, 984
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 6 cut(s) 158, 219, 228, 256, 468, 1007
HapII CCGG 3 cut(s) 242, 282, 1008
HgaI GACGC 1 cut(s) 859
HhaI GCGC 1 cut(s) 44
Hin1II CATG 4 cut(s) 406, 448, 525, 781
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 306, 1011
HpaII CCGG 3 cut(s) 242, 282, 1008
HphI GGTGA 3 cut(s) 221, 823, 847
Hpy188I TCNGA 5 cut(s) 154, 294, 305, 696, 997
Hpy188III TCNNGA 5 cut(s) 34, 242, 778, 908, 1015
HpyAV CCTTC 5 cut(s) 58, 209, 458, 487, 997
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 584, 590, 710, 826
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 4 cut(s) 129, 153, 170, 953
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 4 cut(s) 406, 448, 525, 781
HspAI GCGC 1 cut(s) 42
Kpn2I TCCGGA 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 6 cut(s) 147, 175, 199, 416, 789, 931
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 535
LweI GCATC 3 cut(s) 235, 577, 700
MaeI CTAG 5 cut(s) 357, 573, 773, 839, 984
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 815, 829
MalI GATC 6 cut(s) 149, 177, 201, 418, 791, 933
MboI GATC 6 cut(s) 147, 175, 199, 416, 789, 931
MboII GAAGA 6 cut(s) 49, 73, 224, 426, 571, 577
MflI RGATCY 4 cut(s) 147, 416, 789, 931
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 6 cut(s) 137, 579, 702, 900, 962, 974
MmeI TCCRAC 1 cut(s) 1004
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 696
MspI CCGG 3 cut(s) 242, 282, 1008
MspR9I CCNGG 4 cut(s) 258, 283, 316, 642
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 3 cut(s) 258, 316, 642
MwoI GCNNNNNNNGC 1 cut(s) 225
NciI CCSGG 1 cut(s) 283
NdeII GATC 6 cut(s) 147, 175, 199, 416, 789, 931
NlaIII CATG 4 cut(s) 406, 448, 525, 781
NlaIV GGNNCC 3 cut(s) 95, 550, 1029
NmuCI GTSAC 1 cut(s) 829
NspI RCATGY 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 906
PagI TCATGA 1 cut(s) 777
PceI AGGCCT 2 cut(s) 158, 219
PciI ACATGT 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 32
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 2 cut(s) 306, 1011
PflFI GACNNNGTC 1 cut(s) 773
PkrI GCNGC 1 cut(s) 237
Ppu21I YACGTR 1 cut(s) 270
PscI ACATGT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 540
Psp6I CCWGG 3 cut(s) 256, 314, 640
PspEI GGTNACC 1 cut(s) 829
PspGI CCWGG 3 cut(s) 256, 314, 640
PspN4I GGNNCC 3 cut(s) 95, 550, 1029
PspPI GGNCC 4 cut(s) 254, 290, 485, 1028
PsrI GAACNNNNNNTAC 2 cut(s) 649, 681
PstI CTGCAG 2 cut(s) 712, 828
PsuI RGATCY 4 cut(s) 147, 416, 789, 931
PsyI GACNNNGTC 1 cut(s) 773
RsaI GTAC 2 cut(s) 71, 168
RsaNI GTAC 2 cut(s) 70, 167
RseI CAYNNNNRTG 1 cut(s) 696
SacI GAGCTC 1 cut(s) 540
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 6 cut(s) 147, 175, 199, 416, 789, 931
Sau96I GGNCC 4 cut(s) 254, 290, 485, 1028
ScrFI CCNGG 4 cut(s) 258, 283, 316, 642
SduI GDGCHC 1 cut(s) 540
SfaNI GCATC 3 cut(s) 235, 577, 700
SfcI CTRYAG 2 cut(s) 708, 824
SfiI GGCCNNNNNGGCC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 906
SinI GGWCC 3 cut(s) 290, 485, 1028
SlaI CTCGAG 1 cut(s) 906
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 2 cut(s) 530, 906
SmoI CTYRAG 2 cut(s) 530, 906
SnaBI TACGTA 1 cut(s) 270
Sse9I AATT 6 cut(s) 137, 579, 702, 900, 962, 974
SseBI AGGCCT 2 cut(s) 158, 219
SsiI CCGC 2 cut(s) 236, 338
SspMI CTAG 5 cut(s) 357, 573, 773, 839, 984
SstI GAGCTC 1 cut(s) 540
StuI AGGCCT 2 cut(s) 158, 219
StyD4I CCNGG 4 cut(s) 256, 281, 314, 640
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 1 cut(s) 874
TaiI ACGT 1 cut(s) 272
TaqI TCGA 4 cut(s) 33, 612, 729, 907
TaqII GACCGA 1 cut(s) 487
TasI AATT 6 cut(s) 137, 579, 702, 900, 962, 974
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 2 cut(s) 306, 1011
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 1 cut(s) 829
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 5 cut(s) 101, 578, 712, 714, 869
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 1 cut(s) 877
Tth111I GACNNNGTC 1 cut(s) 773
VpaK11BI GGWCC 3 cut(s) 290, 485, 1028
XapI RAATTY 4 cut(s) 137, 702, 962, 974
XceI RCATGY 1 cut(s) 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 906
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 5 cut(s) 357, 573, 773, 839, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.