Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Forward (+)

49762897 .. 49766897

Gene Structure 4001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG355000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGAGTGGACTACTACAAGATACTCCAGGTCGATAAGAACGCAAAAGATGAGGATTTGAAGAAGGCTTATCGGAAGCTCGCCATGAAATGGCATCCCGACAAGAATCCCAATAACAAGAAACAAGCCGAAGCCAAGTTCAAAGAAGTTTCGGAAGCCTATGAGGTTCTGAGTGATCCCCAGAAAAGAGCAGTGTATGATCAGTATGGTGAAGAGGGGCTAAAGGGTCAAGTGCCACCTTCTGACTTTGGAGGAGCTTCCTACTTCTCAACTGGAAATGGGCCAACAGCGTTTCATTTTAATCCTCGAAATGCAGACGACATATTTGCCGAGTTTTTTGGCACGAGAGGGGGAGGGTTTTCAAGTAGCTTGTTTGGTGATAGTAGCTTCTTTGGTGACAATGCATTTGCTTTTAGAGAAGGTGGAGGTGGTTCAATGAAATACGGTGGTCCTCGCAAAGCCTCTCCAATTGAGAACAGGTTGCCTTGTAGCCTTGAAGAGCTTTACAAAGGAACTAGCAAGAAGATGAAGATATCCAGATATATTGCTGACACCAGTGGGAAGGGCATGGAGGTGGAGGAAATTCTGACCATTGACGTAAAACCTGGCTGGAAGAAGGGTACTAAAATTACCTTTCCAGAGAAAGGAAATGAACAGCCAAATGTTATTCCTGCAGATCTTGTTTTCATTATTGACGAGAAGCCACACAGTGTGTTCACTCGTGATGGAAATGACTTGATAGTGACACAGAATATATCTTTGGTCGAGGCTCTTACTGGCTACACTGTCAACCTCACCACCCTGGATGGTAGGGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

273

Amino Acids

30.19

Weight (kDa)

6.36

Isoelectric Point (pI)

25.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	3.9e-28	DnaJ domain
DnaJ_C	PF01556	157 - 271	2.2e-29	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	90
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	582
AdeI	CACNNNGTG	2 cut(s)	710, 712
AfaI	GTAC	1 cut(s)	622
AfiI	CCNNNNNNNGG	2 cut(s)	90, 644
AgsI	TTSAA	5 cut(s)	61, 142, 363, 435, 497
AjnI	CCWGG	3 cut(s)	27, 604, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	5 cut(s)	79, 257, 369, 387, 502
AluI	AGCT	5 cut(s)	79, 257, 369, 387, 502
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	582
ArsI	GACNNNNNNTTYG	4 cut(s)	308, 340, 389, 421
AspS9I	GGNCC	2 cut(s)	281, 449
AsuHPI	GGTGA	4 cut(s)	221, 389, 407, 787
AvaII	GGWCC	1 cut(s)	449
BauI	CACGAG	2 cut(s)	343, 720
BccI	CCATC	2 cut(s)	719, 800
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	3 cut(s)	29, 606, 803
BclI	TGATCA	1 cut(s)	199
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	672
BglII	AGATCT	1 cut(s)	676
Bme1390I	CCNGG	3 cut(s)	29, 606, 803
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	281, 449
BmrFI	CCNGG	3 cut(s)	29, 606, 803
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	801
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 644
Bse1I	ACTGG	3 cut(s)	277, 555, 781
BseBI	CCWGG	3 cut(s)	29, 606, 803
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	2 cut(s)	94, 811
BseLI	CCNNNNNNNGG	2 cut(s)	90, 644
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	3 cut(s)	277, 555, 781
BseRI	GAGGAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	90, 644
BsnI	GGCC	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	175, 199, 676
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	492
BsrI	ACTGG	3 cut(s)	277, 555, 781
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	3 cut(s)	175, 199, 676
BssSI	CACGAG	2 cut(s)	343, 720
Bst2BI	CACGAG	2 cut(s)	343, 720
Bst2UI	CCWGG	3 cut(s)	29, 606, 803
Bst4CI	ACNGT	3 cut(s)	446, 710, 787
Bst6I	CTCTTC	2 cut(s)	207, 492
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	94, 811
BstKTI	GATC	3 cut(s)	178, 202, 679
BstMBI	GATC	3 cut(s)	175, 199, 676
BstNI	CCWGG	3 cut(s)	29, 606, 803
BstSCI	CCNGG	3 cut(s)	27, 604, 801
BstSFI	CTRYAG	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	94, 811
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	4 cut(s)	198, 562, 715, 783
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	281, 449
Csp6I	GTAC	1 cut(s)	621
CviAII	CATG	2 cut(s)	85, 568
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	177, 201, 678
DpnII	GATC	3 cut(s)	175, 199, 676
DraIII	CACNNNGTG	2 cut(s)	710, 712
Eam1104I	CTCTTC	2 cut(s)	207, 492
EarI	CTCTTC	2 cut(s)	207, 492
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	27, 604, 801
EcoRV	GATATC	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	406
FaeI	CATG	2 cut(s)	88, 571
FaiI	YATR	8 cut(s)	86, 162, 198, 207, 323, 543, 569, 755
FatI	CATG	2 cut(s)	84, 567
FbaI	TGATCA	1 cut(s)	199
FokI	GGATG	2 cut(s)	81, 818
FspBI	CTAG	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	88, 571
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	4 cut(s)	221, 389, 407, 787
Hpy166II	GTNNAC	3 cut(s)	10, 717, 790
Hpy188I	TCNGA	5 cut(s)	75, 154, 171, 244, 588
Hpy188III	TCNNGA	4 cut(s)	98, 537, 638, 722
Hpy8I	GTNNAC	3 cut(s)	10, 717, 790
HpyAV	CCTTC	5 cut(s)	58, 249, 413, 556, 610
HpyCH4III	ACNGT	3 cut(s)	446, 710, 787
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	3 cut(s)	314, 404, 674
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	2 cut(s)	88, 571
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	175, 199, 676
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	254
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	2 cut(s)	395, 742
MalI	GATC	3 cut(s)	177, 201, 678
MboI	GATC	3 cut(s)	175, 199, 676
MboII	GAAGA	6 cut(s)	73, 224, 509, 535, 541, 625
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	676
MluCI	AATT	3 cut(s)	468, 582, 627
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	2 cut(s)	300, 820
MslI	CAYNNNNRTG	1 cut(s)	572
MspR9I	CCNGG	3 cut(s)	29, 606, 803
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	3 cut(s)	29, 606, 803
NdeII	GATC	3 cut(s)	175, 199, 676
NlaIII	CATG	2 cut(s)	88, 571
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	395, 742
NsiI	ATGCAT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	90
Psp6I	CCWGG	3 cut(s)	27, 604, 801
PspGI	CCWGG	3 cut(s)	27, 604, 801
PspPI	GGNCC	2 cut(s)	281, 449
PstI	CTGCAG	1 cut(s)	676
PsuI	RGATCY	1 cut(s)	676
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	300, 820
Sau3AI	GATC	3 cut(s)	175, 199, 676
Sau96I	GGNCC	2 cut(s)	281, 449
ScrFI	CCNGG	3 cut(s)	29, 606, 803
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse9I	AATT	3 cut(s)	468, 582, 627
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	27, 604, 801
TaaI	ACNGT	3 cut(s)	446, 710, 787
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	3 cut(s)	33, 307, 765
TasI	AATT	3 cut(s)	468, 582, 627
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	300, 820
Tru9I	TTAA	2 cut(s)	300, 820
TscAI	CASTG	4 cut(s)	198, 562, 715, 790
TseFI	GTSAC	2 cut(s)	395, 742
Tsp45I	GTSAC	2 cut(s)	395, 742
TspDTI	ATGAA	6 cut(s)	101, 284, 452, 542, 666, 676
TspRI	CASTG	4 cut(s)	198, 562, 715, 790
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	582
XspI	CTAG	1 cut(s)	516
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.