Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003496

Physical Location & Seq

Genomic Coordinates Forward (+)

2528532 .. 2530724

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G052500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGTGTGGATTACTACAAGCTTTTGCAGGTTGACAAGAACGCCACAGATGACGATTTGAAGAAAGCTTACAGAAAGCTGGCCATGAAATGGCACCCTGATAAGAACCCCACCAATAAGAAAGAAGCTGAAGCGAAATTCAAACAGATCTCTGAGGCCTATGAGGTTCTGAGTGATCCCCAGAAAAGAGCAATTTATGATCAATATGGAGAAGAAGGCCTAAAAGGCCAGGTGCCGCCACCAGATGCTGGTGGTCCTGGTGGAGCTACCTACTTCCAAACTGGGGATGGTCCAAATGTCTTTAGATTCAACCCCAGAAATGCCGACGACATTTTCGCTGAGATTTTCGGGTTCTCAAGCCCCATGGGTGGAATGGGAGGTGGAATGGGAGGTGGAGGAGGTGGTGCTGGTAGTGGCATGAGGGGTACAAGGTCCTTTGGTGGACTGTTTGGAGATGACATGTTTAGCTCATTTGGAGAAGGCCGGCCCATGACTCAGGCTCCACGAAAAGCTTCACCGATAGAGAAGAGGTTGCCATGTAGCCTTGAGGAGCTCTATAGGGGGACTACTAAGAAGATGAAAATATCAAGGGAAATTGCAGATGCAAGTGGGAAGACCTTGCCAGTGGAGGAAATTCTAACCATAGAAATCAAGCCTGGCTGGAAAAAGGGAACAAAAATCACCTTCCCAGAGAAAGGGAATGAGCAAGGAAACGTAATTCCTGCAGATCTTGTGTTCATAATTGATGAGAAACCACACAGCACATTCACAAGGGATGGCAACGACCTTGTTGTCACACAGAAGATCTCCCTAGCAGAAGCTCTCACGGGCTACACAGTCCATCTGACCACACTAGATGGAAGGACCCTCGCCATCCCCATCAACAATGTCATTCATCCAGACTATGAGGAGGTTGTCCCTAAAGAGGGTATGCCCATACCTAAAGACCCATCCAAGAAGGGCAACCTTAGAATCAAATTCAATATCAAGTTTCCGAGTAGGTTGAATTCTGAACAGAAAGCCGGAATTAAGAAACTTTTGGCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

350

Amino Acids

38.09

Weight (kDa)

8.93

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20560 AT4G28480 AT4G28480
fragaria_vesca	FvH4_3g08630 FvH4_6g26690
malus_domestica	MD05G1310300.v1.1 MD10G1289200.v1.1
prunus_persica	Prupe.4G052500_v2.0.a1
pyrus_communis	pycom05g28670 pycom10g24180
rosa_chinensis	RchiOBHm_Chr2g0127101 RchiOBHm_Chr5g0009211
rosa_laevigata	RLG00000018979 RLG00000031634 RLG00000031638 RLG00000031640
rosa_multiflora	Rmu_sc0006233.1_g000031 Rmu_sc0008093.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066850 Rroxscaffold_1G00067550 Rroxscaffold_2G00115770 Rroxscaffold_2G00116220
rosa_rugosa	Rorug02G0277300 Rorug02G0277400 Rorug04G0441500
rosa_samantha	Rh2AG327900 Rh2BG337900 Rh2CG315000 Rh2DG355000 Rh5AG071300 Rh5BG067800 Rh5CG080100 Rh5DG067800
rosa_wichuraiana	Rw2G026600 Rw5G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	2 cut(s)	93, 232
AccB7I	CCANNNNNTGG	2 cut(s)	90, 248
AciI	CCGC	2 cut(s)	236, 1043
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	4 cut(s)	137, 633, 977, 1006
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	7 cut(s)	90, 248, 283, 368, 695, 925, 926
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	5 cut(s)	61, 142, 310, 982, 1006
AjnI	CCWGG	3 cut(s)	228, 256, 655
AluBI	AGCT	9 cut(s)	22, 68, 79, 128, 266, 468, 512, 553, 821
AluI	AGCT	9 cut(s)	22, 68, 79, 128, 266, 468, 512, 553, 821
Alw21I	GWGCWC	1 cut(s)	555
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	6 cut(s)	81, 156, 217, 226, 481, 485
ApoI	RAATTY	4 cut(s)	137, 633, 977, 1006
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
Asp700I	GAANNNNTTC	1 cut(s)	511
AspS9I	GGNCC	5 cut(s)	254, 290, 432, 486, 864
AsuHPI	GGTGA	2 cut(s)	507, 673
AvaII	GGWCC	4 cut(s)	254, 290, 432, 864
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	93, 232
BanII	GRGCYC	1 cut(s)	555
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	555
BccI	CCATC	7 cut(s)	281, 770, 849, 851, 881, 887, 958
BciT130I	CCWGG	3 cut(s)	230, 258, 657
BclI	TGATCA	1 cut(s)	199
BfaI	CTAG	2 cut(s)	812, 854
BfmI	CTRYAG	2 cut(s)	556, 723
BfuAI	ACCTGC	1 cut(s)	19
BglI	GCCNNNNNGGC	1 cut(s)	225
BglII	AGATCT	3 cut(s)	147, 727, 804
BisI	GCNGC	2 cut(s)	236, 1044
BlsI	GCNGC	2 cut(s)	237, 1045
Bme1390I	CCNGG	3 cut(s)	230, 258, 657
Bme18I	GGWCC	4 cut(s)	254, 290, 432, 864
BmgT120I	GGNCC	5 cut(s)	254, 290, 432, 486, 864
BmiI	GGNNCC	4 cut(s)	95, 234, 501, 866
BmrFI	CCNGG	3 cut(s)	230, 258, 657
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	235, 592
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	340, 566
BsaJI	CCNNGG	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	7 cut(s)	90, 248, 283, 368, 695, 925, 926
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	2 cut(s)	286, 623
BseBI	CCWGG	3 cut(s)	230, 258, 657
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	5 cut(s)	292, 781, 873, 895, 950
BseLI	CCNNNNNNNGG	7 cut(s)	90, 248, 283, 368, 695, 925, 926
BseMII	CTCAG	4 cut(s)	144, 161, 330, 509
BseNI	ACTGG	2 cut(s)	286, 623
BseRI	GAGGAG	3 cut(s)	411, 563, 923
BshFI	GGCC	6 cut(s)	83, 158, 219, 228, 483, 487
BshNI	GGYRCC	2 cut(s)	93, 232
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	484, 1023
BslFI	GGGAC	2 cut(s)	577, 902
BslI	CCNNNNNNNGG	7 cut(s)	90, 248, 283, 368, 695, 925, 926
BsmFI	GGGAC	2 cut(s)	577, 902
BsnI	GGCC	6 cut(s)	83, 158, 219, 228, 483, 487
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	5 cut(s)	147, 175, 199, 727, 804
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	2 cut(s)	236, 1043
BspANI	GGCC	6 cut(s)	83, 158, 219, 228, 483, 487
BspCNI	CTCAG	4 cut(s)	145, 162, 331, 508
BspLI	GGNNCC	4 cut(s)	95, 234, 501, 866
BspMAI	CTGCAG	1 cut(s)	727
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	2 cut(s)	93, 232
BsrFI	RCCGGY	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	286, 623
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	5 cut(s)	147, 175, 199, 727, 804
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	3 cut(s)	230, 258, 657
Bst4CI	ACNGT	2 cut(s)	447, 838
Bst6I	CTCTTC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	81, 485
BstDEI	CTNAG	6 cut(s)	153, 170, 339, 495, 570, 968
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	5 cut(s)	292, 781, 873, 895, 950
BstKTI	GATC	5 cut(s)	150, 178, 202, 730, 807
BstMBI	GATC	5 cut(s)	147, 175, 199, 727, 804
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	3 cut(s)	230, 258, 657
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	3 cut(s)	228, 256, 655
BstSFI	CTRYAG	2 cut(s)	556, 723
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	3 cut(s)	147, 727, 804
BstYI	RGATCY	3 cut(s)	147, 727, 804
BsuRI	GGCC	6 cut(s)	83, 158, 219, 228, 483, 487
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	292, 781, 873, 895, 950
BtsIMutI	CAGTG	1 cut(s)	630
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	81, 485
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	5 cut(s)	254, 290, 432, 486, 864
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	7 cut(s)	85, 364, 418, 460, 490, 537, 1047
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	6 cut(s)	153, 170, 339, 495, 570, 968
DpnI	GATC	5 cut(s)	149, 177, 201, 729, 806
DpnII	GATC	5 cut(s)	147, 175, 199, 727, 804
DrdI	GACNNNNNNGTC	1 cut(s)	791
DseDI	GACNNNNNNGTC	1 cut(s)	791
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	2 cut(s)	158, 219
Eco24I	GRGCYC	1 cut(s)	555
Eco47I	GGWCC	4 cut(s)	254, 290, 432, 864
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	553
EcoO109I	RGGNCCY	2 cut(s)	432, 864
EcoRI	GAATTC	1 cut(s)	1006
EcoRII	CCWGG	3 cut(s)	228, 256, 655
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	7 cut(s)	88, 367, 421, 463, 493, 540, 1050
FaqI	GGGAC	2 cut(s)	577, 902
FatI	CATG	7 cut(s)	84, 363, 417, 459, 489, 536, 1046
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	236, 1044
FokI	GGATG	5 cut(s)	299, 788, 860, 882, 937
FriOI	GRGCYC	1 cut(s)	555
FseI	GGCCGGCC	1 cut(s)	487
Fsp4HI	GCNGC	2 cut(s)	236, 1044
FspBI	CTAG	2 cut(s)	812, 854
GluI	GCNGC	2 cut(s)	236, 1044
HaeIII	GGCC	6 cut(s)	83, 158, 219, 228, 483, 487
HapII	CCGG	2 cut(s)	484, 1023
Hin1II	CATG	7 cut(s)	88, 367, 421, 463, 493, 540, 1050
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	3 cut(s)	20, 66, 510
HinfI	GANTC	3 cut(s)	306, 493, 972
HpaII	CCGG	2 cut(s)	484, 1023
HphI	GGTGA	2 cut(s)	507, 673
Hpy166II	GTNNAC	2 cut(s)	34, 443
Hpy188I	TCNGA	5 cut(s)	154, 171, 846, 996, 1012
Hpy188III	TCNNGA	1 cut(s)	899
Hpy8I	GTNNAC	2 cut(s)	34, 443
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	5 cut(s)	209, 473, 694, 855, 952
HpyCH4III	ACNGT	2 cut(s)	447, 838
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	4 cut(s)	28, 599, 605, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	6 cut(s)	153, 170, 339, 495, 570, 968
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	7 cut(s)	88, 367, 421, 463, 493, 540, 1050
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	147, 175, 199, 727, 804
LmnI	GCTCC	3 cut(s)	263, 505, 550
LweI	GCATC	2 cut(s)	235, 592
MaeI	CTAG	2 cut(s)	812, 854
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	5 cut(s)	149, 177, 201, 729, 806
MboI	GATC	5 cut(s)	147, 175, 199, 727, 804
MboII	GAAGA	6 cut(s)	73, 224, 538, 586, 625, 814
MflI	RGATCY	3 cut(s)	147, 727, 804
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	9 cut(s)	137, 192, 594, 633, 717, 741, 977, 1006, 1026
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	487
Mox20I	TGGCCA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	1029
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	2 cut(s)	484, 1023
MspR9I	CCNGG	3 cut(s)	230, 258, 657
MvaI	CCWGG	3 cut(s)	230, 258, 657
MwoI	GCNNNNNNNGC	1 cut(s)	225
NaeI	GCCGGC	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	5 cut(s)	147, 175, 199, 727, 804
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	7 cut(s)	88, 367, 421, 463, 493, 540, 1050
NlaIV	GGNNCC	4 cut(s)	95, 234, 501, 866
NmuCI	GTSAC	1 cut(s)	793
NspI	RCATGY	1 cut(s)	463
PceI	AGGCCT	2 cut(s)	158, 219
PciI	ACATGT	1 cut(s)	459
PdiI	GCCGGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	306, 972
PflMI	CCANNNNNTGG	2 cut(s)	90, 248
PkrI	GCNGC	2 cut(s)	237, 1045
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	2 cut(s)	432, 864
PscI	ACATGT	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	555
Psp5II	RGGWCCY	2 cut(s)	432, 864
Psp6I	CCWGG	3 cut(s)	228, 256, 655
PspGI	CCWGG	3 cut(s)	228, 256, 655
PspN4I	GGNNCC	4 cut(s)	95, 234, 501, 866
PspPI	GGNCC	5 cut(s)	254, 290, 432, 486, 864
PspPPI	RGGWCCY	2 cut(s)	432, 864
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	3 cut(s)	147, 727, 804
RigI	GGCCGGCC	1 cut(s)	487
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	1029
SatI	GCNGC	2 cut(s)	236, 1044
Sau3AI	GATC	5 cut(s)	147, 175, 199, 727, 804
Sau96I	GGNCC	5 cut(s)	254, 290, 432, 486, 864
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	3 cut(s)	230, 258, 657
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	2 cut(s)	235, 592
SfcI	CTRYAG	2 cut(s)	556, 723
SfiI	GGCCNNNNNGGCC	1 cut(s)	225
SinI	GGWCC	4 cut(s)	254, 290, 432, 864
SmlI	CTYRAG	2 cut(s)	355, 545
SmoI	CTYRAG	2 cut(s)	355, 545
Sse9I	AATT	9 cut(s)	137, 192, 594, 633, 717, 741, 977, 1006, 1026
SseBI	AGGCCT	2 cut(s)	158, 219
SsiI	CCGC	2 cut(s)	236, 1043
SspMI	CTAG	2 cut(s)	812, 854
SstI	GAGCTC	1 cut(s)	555
StuI	AGGCCT	2 cut(s)	158, 219
StyD4I	CCNGG	3 cut(s)	228, 256, 655
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	447, 838
TaiI	ACGT	1 cut(s)	717
TasI	AATT	9 cut(s)	137, 192, 594, 633, 717, 741, 977, 1006, 1026
TauI	GCSGC	2 cut(s)	238, 1046
TfiI	GAWTC	2 cut(s)	306, 972
Tru1I	TTAA	1 cut(s)	1029
Tru9I	TTAA	1 cut(s)	1029
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	793
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	4 cut(s)	101, 593, 727, 884
TspRI	CASTG	1 cut(s)	630
Van91I	CCANNNNNTGG	2 cut(s)	90, 248
VpaK11BI	GGWCC	4 cut(s)	254, 290, 432, 864
XapI	RAATTY	4 cut(s)	137, 633, 977, 1006
XceI	RCATGY	1 cut(s)	463
XcmI	CCANNNNNNNNNTGG	2 cut(s)	284, 370
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	2 cut(s)	812, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.