Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001815

Physical Location & Seq

Genomic Coordinates Reverse (-)

9184150 .. 9185623

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21455.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATGCTAATCAACAAAATCCACAAAAGAAAGCTTGGCCTCCAAATCCACTTAGCAAGAGCATTACTCAAGGAGATCTTGCCAAGCGCCTTGACCCATTCTATCTACCTAATCTCTTTGATGGGTTTGAAGATAGTAAATACGGATTGCTTGTTGATGATGTTGTGAGACTTTGTAAGCTGAAACGTGACTACTCGAGTGGTTATATCTCGCTGGCAGATATTGAAGCTAGAGAAGAGAAAAAACCAGCCAAGTCTGCTAATATTATTATTAGCGAACCAACCAAGTCTACTAATATTATTATCAGCGAACCAGCCAAGTCTGCTGATATTATTATCATCGATTCAGATGATGTGTTGCCTCAAGAATCAGTTATTCCTCCAGATGATAAACGATCGAAGAAGCTCAAGGAAGTGATTGTTGTGGATGATGATGAGCCTTGGTTTTATGCTAATGATAAGTTGACTATAGGCTCGGCTTCTACTAGTAATGCTGTTCGAAACAGTTCTTATGATGTTGTGATGTATGGAAATAGCTCAGGATGTCTTCAAGAAGGTTGTGTTGGGGAGGGTTCATCGAGGAATTCTATTGATAATGACAATCAAACTCCTCTATATGTAGAGGCAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009653 GO:0009791 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0040030 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044764 GO:0045857 GO:0046483 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

211

Amino Acids

23.31

Weight (kDa)

4.73

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16390 AT2G16390 AT2G21450 AT2G21450 AT2G21450 AT2G21455
fragaria_vesca	FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760
malus_domestica	MD05G1059900.v1.1 MD10G1068100.v1.1
prunus_persica	Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1
pyrus_communis	pycom05g05130 pycom10g05390
rosa_chinensis	RchiOBHm_Chr6g0266061 RchiOBHm_Chr6g0266081
rosa_laevigata	RLG00000014118 RLG00000014121
rosa_multiflora	Rmu_sc0000776.1_g000029 Rmu_sc0000776.1_g000037
rosa_roxburghii	Rroxscaffold_174G00435180 Rroxscaffold_174G00435190 Rroxscaffold_7G00201990 Rroxscaffold_7G00202000
rosa_rugosa	Rorug06G0023000 Rorug06G0023700
rosa_samantha	Rh6AG144300 Rh6AG144400 Rh6BG144700 Rh6BG144900 Rh6CG141400 Rh6CG141600 Rh6DG129100 Rh6DG129200
rosa_wichuraiana	Rw1G008890 Rw6G012470 Rw6G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	583
AgsI	TTSAA	3 cut(s)	131, 227, 551
AhlI	ACTAGT	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	5 cut(s)	35, 181, 230, 406, 537
AluI	AGCT	5 cut(s)	35, 181, 230, 406, 537
Alw26I	GTCTC	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	583
Asp700I	GAANNNNTTC	1 cut(s)	505
AspLEI	GCGC	1 cut(s)	90
AsuII	TTCGAA	1 cut(s)	499
AvaI	CYCGRG	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	539
BccI	CCATC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	2 cut(s)	231, 486
BfmI	CTRYAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	91
BglII	AGATCT	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	539
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	538
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	3 cut(s)	54, 348, 392
Bsa29I	ATCGAT	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	9
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	3 cut(s)	10, 433, 548
BseJI	GATNNNNATC	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	600
Bsh1285I	CGRYCG	1 cut(s)	398
BshFI	GGCC	1 cut(s)	40
BshVI	ATCGAT	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	196
Bsp119I	TTCGAA	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	76, 395
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	551
BspDI	ATCGAT	1 cut(s)	342
BspT104I	TTCGAA	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	76, 395
BssT1I	CCWWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	53, 538
BstF5I	GGATG	3 cut(s)	10, 433, 548
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	79, 398
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	76, 395
BstMCI	CGRYCG	1 cut(s)	398
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 323
BstSFI	CTRYAG	1 cut(s)	468
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	40
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	10, 433, 548
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	342
DdeI	CTNAG	2 cut(s)	53, 538
DpnI	GATC	2 cut(s)	78, 397
DpnII	GATC	2 cut(s)	76, 395
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaiI	YATR	7 cut(s)	207, 450, 470, 513, 528, 616, 618
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FblI	GTMKAC	1 cut(s)	290
FokI	GGATG	3 cut(s)	17, 440, 555
FspBI	CTAG	2 cut(s)	231, 486
GlaI	GCGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	2 cut(s)	344, 368
Hpy166II	GTNNAC	2 cut(s)	291, 465
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	4 cut(s)	365, 383, 540, 551
Hpy8I	GTNNAC	2 cut(s)	291, 465
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 323
HpyF3I	CTNAG	2 cut(s)	53, 538
HpySE526I	ACGT	1 cut(s)	187
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	76, 395
LpnPI	CCDG	5 cut(s)	200, 261, 327, 396, 525
MaeI	CTAG	2 cut(s)	231, 486
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	78, 397
MboI	GATC	2 cut(s)	76, 395
MboII	GAAGA	4 cut(s)	143, 248, 412, 539
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	1 cut(s)	583
MnlI	CCTC	7 cut(s)	51, 372, 390, 562, 573, 616, 621
MroXI	GAANNNNTTC	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	257, 323
NdeII	GATC	2 cut(s)	76, 395
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	188
NspV	TTCGAA	1 cut(s)	499
PaeR7I	CTCGAG	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	505
PfeI	GAWTC	2 cut(s)	344, 368
Ple19I	CGATCG	1 cut(s)	398
PspXI	VCTCGAGB	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	398
Sau3AI	GATC	2 cut(s)	76, 395
SetI	ASST	8 cut(s)	37, 112, 183, 190, 232, 408, 539, 559
SfcI	CTRYAG	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	499
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	4 cut(s)	69, 196, 363, 407
SmoI	CTYRAG	4 cut(s)	69, 196, 363, 407
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	1 cut(s)	583
SspI	AATATT	2 cut(s)	265, 298
SspMI	CTAG	2 cut(s)	231, 486
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	5 cut(s)	197, 342, 398, 499, 578
TasI	AATT	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	344, 368
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	564
TspGWI	ACGGA	1 cut(s)	159
XapI	RAATTY	1 cut(s)	583
XhoI	CTCGAG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	505
XspI	CTAG	2 cut(s)	231, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.