Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001815

Physical Location & Seq

Genomic Coordinates Forward (+)

22176469 .. 22181098

Gene Structure 4630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGTCCAACGGTGTGCCAAAAAAACGAAATCACTCAAATTTTATGGCACTAGCACAACCTGTCATTGACCTTAGTTCCAATGGTGAAGACAATGGTAGGAGGAGGTCATCGAATGTGCATCAGAAAATAAAGCTGGAACCTCCTCCGGAACACCATCAACAGGTCATGGATATGGAGGTTCAGTATCCAAACAATCTTACAGCACTAGCACCTCCTGCCATCGTCCTTAGTTCTGATGACGAAGACAATGGAAGTAGGGAGCCACTTCATCTGTATCCGAAGATTGTATTGGAGCCTCCTCCTCCTACAGAACATGATCAACGTGTCATTGATATGGAAACTAAATCTTCAAACAATATTGCAGCAGTAGGACCATCTGTGGTTTTCCTTAGTTCCGATGATGAAGACGATGAGAGTAGGATGATATTTCATGAGAAGGTTGTCTTGGAGCCTGTTGATAGACTTCTAAAGAAGAGCTCTATGGATAGTGTAGAGATGAATGCTCAAAGAAAAGAGTTGGAAACTATACCTGGATTGAATATGGGGATGCATAAAGACATAAAGGACGGTGTACAGAGCACGGATCATATCTGGAAAGATGTAGATGTTGGTGCAGCAGAAGATGTGGCTGGTCTAGAACTCATTGATTGTCACGGGCATGATATTCTGGTTCAGGATTGTTTAGCAAGCAAAGATCACCTAGAAGAGTTGAAAACATTGGCCGAAAAAGATGTAGATATTGATGGAGACAGAACTTCTGAAAAGGAGTTCAGTGATCAAAGTAATTCTGAAAGTATAGAAGATATACAAAGCATAGCTCCAAGCACAGAGGTCGGAACTCTAGTTCATGAAAATGATATGGTGGTTGGGGAAGGTAATGTGGAAGATGATATGAAGGATAGTGGTAAAATCAATGTTGAGGAAGATGATAGACATGACACAGAGGAAGATGATGAAAACAATATCAAGGAAGATGATCTGAGTGATATTGAGGAAGATGATGTAAATGATAATGAGGAAGATGATGCAAATGATATTGAGGGAGAGGATCTAACAGATGCATGGAACGAGATGACAATGGCATTACAATGTGCCAAGGATATTGCTGTCGGTCCTTCAGCTGATGATCCATCTAGTGAATGTGGGGAAGAATGTGATCACTACTTCATCCTGAAGGATGATCTTGGGTTAGTGTGTCGTATTTGTGGAGTTATTCAGAAGGGGATTGATACCATATTTGAGTTCCAGTATAATAAGGGAAAAAGGAGTACACGCACTTATGTGCAAGAACCGCGGGATGCCAACAACACAGAGCCAACTGAGAGTTCCTCACTTGGAATCAAGCTTACTACTGGGCGTGATTTAATGGAAACAGAATTTTCTGCTCATCCAAGTCATAGAAAGCACATGAAACCACATCAAGTAGAGGGGTTTAATTTTCTTTGTAGCAATTTGTTGGGAGACAACCCAGGTGGTTGCATTCTTGCTCATGCCCCTGGTTCAGGAAAGACTTTTCTGATTATAAGTTTTGTCCAGAGTTACTTAGCCAGGTTTCCCGATGCTAGACCACTTGTTGTTCTACCTAAAACCATTTTGGATACATGGAAGAAAGAGTTCCGGATATGGCAAGTTGAGGACATTCCTTTGCATGATTTCTATACTTCCAAGGCAGACAAGCGGTCTCAACAGTTGAATGTATTAAAACAATGGGTAGAGCAGAAGAGCATCCTTTTCTTAGGGTATCAACAGTTCTCTACTATAATGTGCGACATTGGCAGTAGCAAGACATCGGATAAATGCCGAGAAATTCTGCAGAAGTCCCCTAGTCTTCTCATATTGGATGAAGGTCACACACCAAGGAATGATGAAACTAATCAGTTTCAAGCTCTTGTAAGAGTACAGACCCCACTGAAAGTAGTTCTCTCAGGAACACTCTATCAAAACCATGTCAAAGAAGTCTTCACTCTCTTAGATCTTGTTCGTCCAAAGTTTCTGAAATTGGACACTTCCCGGGAGATTGTGAAGCGGATCATGAGCATAGTACGGATATCGGGTGTGAGGAAACAATTAAAAGGTGGAGGAGATTCAGCTTTTTTCGACCTAGTAGAGCATACCCTCAAGAAAGATGAAGACTTTAAGAGGAAGGTAGCCATTGTACAAGATCTTCGAGAAATGACCAGGAAGGTGCTCCATTATTATAAAGGTGACTTTTTAGATGAACTTCCTGGGCTTGTTGAGTTCACACTACTACTCGGCCTCACTTCAAGACAGAAAGCTGAATTTGAAAAATTGAAGGGATTGGACAAGTTAAGGAGAATGCCTGTTGGGAGCCTTGTCTCTATGCATCCAGAGTTGAGATATCTTTCAGAAAAAAATCCATCAACTGAGAAGGGCTGCACAGTTGATAATAAGACCATGGATCGATTCTTAGAAAAGTTAAATTTCAGAGATGGAGTAAAAGCTAAATTCTTTCTTAATATGCTTGCGTTGTGTGAATCAAATGATGAGAAGCTACTGGTTTTCAGCCAATATCTCCTGCCCCTGAAACTTATGGAGAGATTAGCTGTGAAGGAAATGGGTTGGAGTCTCAACAAGGAGATTTTTGTGTTAACCGGTGATACAAACTCTAAGCAAAAAGAATGGTCTATGGAACTCTTTAACACCTCACCGGATGCTAAAGTGTTATTTGGTTCCATTAGAGCTTGTGGGGAAGGTATCTCGCTTGTGGGAGCTTCTCGTGTCCTTATTATGGAAGTCCAGCTCAACCCTTCAGTGACTCGGCAAGCAATCGGACGTGCATTTCGACCAGGTCAGAAGAAGAAAGTGCACGTCTATAGATTGGTTGCTGCTGACTCACCAGAGGAGGATGACCACGTGCTCTCTTATACCAAGGAGATGATATCAAAGATATGGTTCGAGTGGACTGAGAGCTGTGGACATCAAGGCTACTCTGGTATGAAGACTGTAGATCTAAATGACTCTGGTGATATGTTCTTGGAAAGTCAGTTGTTGAAGGAAGATATAAAGGTTTTGCAGAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1014

Amino Acids

114.65

Weight (kDa)

4.99

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	469 - 645	8e-10	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	473 - 763	1e-24	SNF2-related domain
Helicase_C	PF00271	822 - 937	3.3e-12	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16390 AT2G16390 AT2G21450 AT2G21450 AT2G21450 AT2G21455
fragaria_vesca	FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760
malus_domestica	MD05G1059900.v1.1 MD10G1068100.v1.1
prunus_persica	Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1
pyrus_communis	pycom05g05130 pycom10g05390
rosa_chinensis	RchiOBHm_Chr6g0266061 RchiOBHm_Chr6g0266081
rosa_laevigata	RLG00000014118 RLG00000014121
rosa_multiflora	Rmu_sc0000776.1_g000029 Rmu_sc0000776.1_g000037
rosa_roxburghii	Rroxscaffold_174G00435180 Rroxscaffold_174G00435190 Rroxscaffold_7G00201990 Rroxscaffold_7G00202000
rosa_rugosa	Rorug06G0023000 Rorug06G0023700
rosa_samantha	Rh6AG144300 Rh6AG144400 Rh6BG144700 Rh6BG144900 Rh6CG141400 Rh6CG141600 Rh6DG129100 Rh6DG129200
rosa_wichuraiana	Rw1G008890 Rw6G012470 Rw6G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1523, 2199
AccII	CGCG	1 cut(s)	1294
AccIII	TCCGGA	2 cut(s)	145, 1617
AciI	CCGC	4 cut(s)	1292, 1294, 1678, 2026
AclWI	GGATC	5 cut(s)	591, 1056, 1121, 2036, 2427
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	6 cut(s)	37, 1376, 1806, 2279, 2440, 2465
AcuI	CTGAAG	3 cut(s)	1101, 1193, 2754
AcvI	CACGTG	1 cut(s)	2875
AfaI	GTAC	5 cut(s)	573, 1270, 1899, 2043, 2157
AfiI	CCNNNNNNNGG	3 cut(s)	160, 1502, 2749
AflIII	ACRYGT	1 cut(s)	322
AgeI	ACCGGT	1 cut(s)	2612
AgsI	TTSAA	9 cut(s)	351, 538, 712, 1693, 1883, 2265, 2285, 2293, 3013
AhdI	GACNNNNNGTC	1 cut(s)	1678
AjiI	CACGTC	2 cut(s)	2795, 2830
AjnI	CCWGG	7 cut(s)	529, 1468, 1495, 1547, 2177, 2224, 2806
AjuI	GAANNNNNNNTTGG	6 cut(s)	272, 304, 428, 460, 1309, 1341
AleI	CACNNNNGTG	1 cut(s)	1280
AloI	GAACNNNNNNTCC	2 cut(s)	828, 860
Alw21I	GWGCWC	5 cut(s)	479, 581, 2190, 2829, 2880
Alw26I	GTCTC	5 cut(s)	741, 1455, 1686, 2341, 2591
Alw44I	GTGCAC	1 cut(s)	2825
AlwI	GGATC	5 cut(s)	591, 1056, 1121, 2036, 2427
Ama87I	CYCGRG	1 cut(s)	2010
Aor13HI	TCCGGA	2 cut(s)	145, 1617
AoxI	GGCC	2 cut(s)	720, 2254
ApaLI	GTGCAC	1 cut(s)	2825
ApeKI	GCWGC	4 cut(s)	362, 614, 2394, 2846
ApoI	RAATTY	6 cut(s)	37, 1376, 1806, 2279, 2440, 2465
ArsI	GACNNNNNNTTYG	2 cut(s)	2784, 2816
AsiGI	ACCGGT	1 cut(s)	2612
Asp700I	GAANNNNTTC	1 cut(s)	1613
AspS9I	GGNCC	2 cut(s)	371, 1112
AsuC2I	CCSGG	2 cut(s)	2011, 2012
AsuHPI	GGTGA	7 cut(s)	95, 689, 2216, 2627, 2658, 2847, 2996
AvaI	CYCGRG	1 cut(s)	2010
AvaII	GGWCC	2 cut(s)	371, 1112
BaeGI	GKGCMC	1 cut(s)	2829
BanII	GRGCYC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	2148, 2180
BauI	CACGAG	1 cut(s)	2736
BbrPI	CACGTG	1 cut(s)	2875
BbsI	GAAGAC	7 cut(s)	93, 249, 411, 1820, 1951, 2136, 2966
Bbv12I	GWGCWC	5 cut(s)	479, 581, 2190, 2829, 2880
BbvI	GCAGC	4 cut(s)	374, 626, 2381, 2833
BccI	CCATC	7 cut(s)	162, 227, 382, 737, 1138, 2386, 2444
BcgI	CGANNNNNNTGC	2 cut(s)	814, 848
BciT130I	CCWGG	7 cut(s)	531, 1470, 1497, 1549, 2179, 2226, 2808
BciVI	GTATCC	3 cut(s)	195, 285, 1591
BclI	TGATCA	3 cut(s)	316, 775, 1156
BcnI	CCSGG	2 cut(s)	2011, 2012
BcoDI	GTCTC	5 cut(s)	741, 1455, 1686, 2341, 2591
BfaI	CTAG	9 cut(s)	50, 206, 635, 701, 842, 1134, 1563, 1824, 2102
BfmI	CTRYAG	4 cut(s)	306, 1811, 2833, 2964
BfuI	GTATCC	3 cut(s)	195, 285, 1591
BglII	AGATCT	3 cut(s)	1972, 2161, 2968
BisI	GCNGC	4 cut(s)	363, 615, 2395, 2847
BlsI	GCNGC	4 cut(s)	364, 616, 2396, 2848
Bme1390I	CCNGG	9 cut(s)	531, 1470, 1497, 1549, 2011, 2012, 2179, 2226, 2808
Bme18I	GGWCC	2 cut(s)	371, 1112
BmeRI	GACNNNNNGTC	1 cut(s)	1678
BmeT110I	CYCGRG	1 cut(s)	2010
BmgBI	CACGTC	2 cut(s)	2795, 2830
BmgT120I	GGNCC	2 cut(s)	371, 1112
BmiI	GGNNCC	6 cut(s)	138, 261, 294, 450, 2330, 2692
BmrFI	CCNGG	9 cut(s)	531, 1470, 1497, 1549, 2011, 2012, 2179, 2226, 2808
BmrI	ACTGGG	1 cut(s)	1362
BmsI	GCATC	9 cut(s)	127, 537, 1015, 1048, 1288, 1549, 1734, 2353, 2662
BmuI	ACTGGG	1 cut(s)	1362
BpiI	GAAGAC	7 cut(s)	93, 249, 411, 1820, 1951, 2136, 2966
BplI	GAGNNNNNCTC	2 cut(s)	1313, 1345
BpuEI	CTTGAG	1 cut(s)	2102
BpuMI	CCSGG	2 cut(s)	2011, 2012
Bsa29I	ATCGAT	1 cut(s)	2422
BsaAI	YACGTR	1 cut(s)	2875
BsaI	GGTCTC	1 cut(s)	1686
BsaWI	WCCGGW	4 cut(s)	145, 1617, 2612, 2668
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 1502, 2749
Bse118I	RCCGGY	1 cut(s)	2612
Bse1I	ACTGG	3 cut(s)	1246, 1357, 2520
BseAI	TCCGGA	2 cut(s)	145, 1617
BseBI	CCWGG	7 cut(s)	531, 1470, 1497, 1549, 2179, 2226, 2808
BseCI	ATCGAT	1 cut(s)	2422
BseLI	CCNNNNNNNGG	3 cut(s)	160, 1502, 2749
BseMII	CTCAG	5 cut(s)	971, 1311, 1938, 2376, 2916
BseNI	ACTGG	3 cut(s)	1246, 1357, 2520
BseRI	GAGGAG	6 cut(s)	115, 132, 288, 291, 2094, 2876
BseSI	GKGCMC	1 cut(s)	2829
BseXI	GCAGC	4 cut(s)	374, 626, 2381, 2833
BsgI	GTGCAG	2 cut(s)	633, 2380
Bsh1236I	CGCG	1 cut(s)	1294
BshFI	GGCC	2 cut(s)	722, 2256
BshTI	ACCGGT	1 cut(s)	2612
BshVI	ATCGAT	1 cut(s)	2422
BsiHKAI	GWGCWC	5 cut(s)	479, 581, 2190, 2829, 2880
BsiHKCI	CYCGRG	1 cut(s)	2010
BsiSI	CCGG	5 cut(s)	146, 1618, 2011, 2613, 2669
BslFI	GGGAC	1 cut(s)	1804
BslI	CCNNNNNNNGG	3 cut(s)	160, 1502, 2749
BsmAI	GTCTC	5 cut(s)	741, 1455, 1686, 2341, 2591
BsmFI	GGGAC	1 cut(s)	1804
BsmI	GAATGC	3 cut(s)	505, 1479, 2322
BsnI	GGCC	2 cut(s)	722, 2256
Bso31I	GGTCTC	1 cut(s)	1686
BsoBI	CYCGRG	1 cut(s)	2010
Bsp1286I	GDGCHC	5 cut(s)	479, 581, 2190, 2829, 2880
Bsp13I	TCCGGA	2 cut(s)	145, 1617
Bsp1407I	TGTACA	2 cut(s)	571, 2155
Bsp19I	CCATGG	1 cut(s)	2415
BspACI	CCGC	4 cut(s)	1292, 1294, 1678, 2026
BspANI	GGCC	2 cut(s)	722, 2256
BspCNI	CTCAG	5 cut(s)	972, 1312, 1937, 2377, 2917
BspDI	ATCGAT	1 cut(s)	2422
BspEI	TCCGGA	2 cut(s)	145, 1617
BspFNI	CGCG	1 cut(s)	1294
BspHI	TCATGA	3 cut(s)	430, 847, 2031
BspLI	GGNNCC	6 cut(s)	138, 261, 294, 450, 2330, 2692
BspMAI	CTGCAG	1 cut(s)	1815
BspPI	GGATC	5 cut(s)	591, 1056, 1121, 2036, 2427
BspQI	GCTCTTC	2 cut(s)	467, 1715
BspTNI	GGTCTC	1 cut(s)	1686
BsrFI	RCCGGY	1 cut(s)	2612
BsrGI	TGTACA	2 cut(s)	571, 2155
BsrI	ACTGG	3 cut(s)	1246, 1357, 2520
BssAI	RCCGGY	1 cut(s)	2612
BssSI	CACGAG	1 cut(s)	2736
BssT1I	CCWWGG	5 cut(s)	1095, 1665, 1856, 2415, 2889
Bst2BI	CACGAG	1 cut(s)	2736
Bst2UI	CCWGG	7 cut(s)	531, 1470, 1497, 1549, 2179, 2226, 2808
Bst4CI	ACNGT	6 cut(s)	11, 569, 1689, 1749, 2401, 2965
Bst6I	CTCTTC	3 cut(s)	467, 699, 1715
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstAUI	TGTACA	2 cut(s)	571, 2155
BstBAI	YACGTR	1 cut(s)	2875
BstC8I	GCNNGC	3 cut(s)	688, 2484, 2784
BstDSI	CCRYGG	2 cut(s)	1292, 2415
BstENI	CCTNNNNNAGG	1 cut(s)	1500
BstFNI	CGCG	1 cut(s)	1294
BstMAI	GTCTC	5 cut(s)	741, 1455, 1686, 2341, 2591
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 1291, 1773
BstNI	CCWGG	7 cut(s)	531, 1470, 1497, 1549, 2179, 2226, 2808
BstSCI	CCNGG	9 cut(s)	529, 1468, 1495, 1547, 2009, 2010, 2177, 2224, 2806
BstSFI	CTRYAG	4 cut(s)	306, 1811, 2833, 2964
BstSLI	GKGCMC	1 cut(s)	2829
BstUI	CGCG	1 cut(s)	1294
BstV1I	GCAGC	4 cut(s)	374, 626, 2381, 2833
BstV2I	GAAGAC	7 cut(s)	93, 249, 411, 1820, 1951, 2136, 2966
BstX2I	RGATCY	4 cut(s)	1048, 1972, 2161, 2968
BstYI	RGATCY	4 cut(s)	1048, 1972, 2161, 2968
Bsu15I	ATCGAT	1 cut(s)	2422
BsuI	GTATCC	3 cut(s)	195, 285, 1591
BsuRI	GGCC	2 cut(s)	722, 2256
BsuTUI	ATCGAT	1 cut(s)	2422
BtgI	CCRYGG	2 cut(s)	1292, 2415
BtrI	CACGTC	2 cut(s)	2795, 2830
BtsIMutI	CAGTG	3 cut(s)	778, 1907, 2778
Cac8I	GCNNGC	3 cut(s)	688, 2484, 2784
CciI	TCATGA	3 cut(s)	430, 847, 2031
Cfr10I	RCCGGY	1 cut(s)	2612
Cfr13I	GGNCC	2 cut(s)	371, 1112
Cfr42I	CCGCGG	1 cut(s)	1295
Cfr9I	CCCGGG	1 cut(s)	2010
ClaI	ATCGAT	1 cut(s)	2422
CsiI	ACCWGGT	1 cut(s)	2806
Csp6I	GTAC	5 cut(s)	572, 1269, 1898, 2042, 2156
CspAI	ACCGGT	1 cut(s)	2612
CspCI	CAANNNNNGTGG	2 cut(s)	1453, 1488
CviQI	GTAC	5 cut(s)	572, 1269, 1898, 2042, 2156
DriI	GACNNNNNGTC	1 cut(s)	1678
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	3 cut(s)	467, 699, 1715
Eam1105I	GACNNNNNGTC	1 cut(s)	1678
EarI	CTCTTC	3 cut(s)	467, 699, 1715
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	5 cut(s)	1095, 1665, 1856, 2415, 2889
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	1686
Eco32I	GATATC	3 cut(s)	2049, 2360, 2901
Eco47I	GGWCC	2 cut(s)	371, 1112
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	3 cut(s)	1101, 1193, 2754
Eco72I	CACGTG	1 cut(s)	2875
Eco88I	CYCGRG	1 cut(s)	2010
EcoICRI	GAGCTC	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	1500
EcoRII	CCWGG	7 cut(s)	529, 1468, 1495, 1547, 2177, 2224, 2806
EcoRV	GATATC	3 cut(s)	2049, 2360, 2901
EcoT14I	CCWWGG	5 cut(s)	1095, 1665, 1856, 2415, 2889
EcoT22I	ATGCAT	3 cut(s)	552, 1063, 2346
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	5 cut(s)	1095, 1665, 1856, 2415, 2889
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	1 cut(s)	1804
FauI	CCCGC	1 cut(s)	1287
FbaI	TGATCA	3 cut(s)	316, 775, 1156
Fnu4HI	GCNGC	4 cut(s)	363, 615, 2395, 2847
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	4 cut(s)	363, 615, 2395, 2847
FspBI	CTAG	9 cut(s)	50, 206, 635, 701, 842, 1134, 1563, 1824, 2102
GluI	GCNGC	4 cut(s)	363, 615, 2395, 2847
HaeIII	GGCC	2 cut(s)	722, 2256
HapII	CCGG	5 cut(s)	146, 1618, 2011, 2613, 2669
HincII	GTYRAC	1 cut(s)	2610
HindII	GTYRAC	1 cut(s)	2610
HindIII	AAGCTT	1 cut(s)	1343
HinfI	GANTC	8 cut(s)	1338, 2084, 2424, 2495, 2584, 2776, 2852, 2978
HpaI	GTTAAC	1 cut(s)	2610
HpaII	CCGG	5 cut(s)	146, 1618, 2011, 2613, 2669
HphI	GGTGA	7 cut(s)	95, 689, 2216, 2627, 2658, 2847, 2996
Hpy166II	GTNNAC	7 cut(s)	572, 1271, 2241, 2610, 2827, 2922, 2936
Hpy8I	GTNNAC	7 cut(s)	572, 1271, 2241, 2610, 2827, 2922, 2936
HpyCH4III	ACNGT	6 cut(s)	11, 569, 1689, 1749, 2401, 2965
HpyCH4IV	ACGT	4 cut(s)	322, 2794, 2829, 2874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 1291, 1773
HpySE526I	ACGT	4 cut(s)	322, 2794, 2829, 2874
Kpn2I	TCCGGA	2 cut(s)	145, 1617
Ksp22I	TGATCA	3 cut(s)	316, 775, 1156
KspAI	GTTAAC	1 cut(s)	2610
KspI	CCGCGG	1 cut(s)	1295
LguI	GCTCTTC	2 cut(s)	467, 1715
LmnI	GCTCC	7 cut(s)	259, 292, 448, 823, 2193, 2328, 2729
Lsp1109I	GCAGC	4 cut(s)	374, 626, 2381, 2833
LweI	GCATC	9 cut(s)	127, 537, 1015, 1048, 1288, 1549, 1734, 2353, 2662
MabI	ACCWGGT	1 cut(s)	2806
MaeI	CTAG	9 cut(s)	50, 206, 635, 701, 842, 1134, 1563, 1824, 2102
MaeII	ACGT	4 cut(s)	322, 2794, 2829, 2874
MaeIII	GTNAC	5 cut(s)	650, 1538, 1847, 2204, 2773
MflI	RGATCY	4 cut(s)	1048, 1972, 2161, 2968
MhlI	GDGCHC	5 cut(s)	479, 581, 2190, 2829, 2880
MlyI	GAGTC	4 cut(s)	2593, 2770, 2846, 2972
MmeI	TCCRAC	4 cut(s)	30, 498, 814, 2561
Mph1103I	ATGCAT	3 cut(s)	552, 1063, 2346
MroI	TCCGGA	2 cut(s)	145, 1617
MroXI	GAANNNNTTC	1 cut(s)	1613
MslI	CAYNNNNRTG	6 cut(s)	170, 332, 657, 852, 1087, 1280
MspA1I	CMGCKG	2 cut(s)	1121, 1294
MspI	CCGG	5 cut(s)	146, 1618, 2011, 2613, 2669
MspR9I	CCNGG	9 cut(s)	531, 1470, 1497, 1549, 2011, 2012, 2179, 2226, 2808
Mva1269I	GAATGC	3 cut(s)	505, 1479, 2322
MvaI	CCWGG	7 cut(s)	531, 1470, 1497, 1549, 2179, 2226, 2808
MvnI	CGCG	1 cut(s)	1294
MwoI	GCNNNNNNNGC	3 cut(s)	215, 1291, 1773
NciI	CCSGG	2 cut(s)	2011, 2012
NcoI	CCATGG	1 cut(s)	2415
NlaIV	GGNNCC	6 cut(s)	138, 261, 294, 450, 2330, 2692
NmeAIII	GCCGAG	3 cut(s)	1826, 2232, 2758
NmuCI	GTSAC	4 cut(s)	650, 1847, 2204, 2773
NsiI	ATGCAT	3 cut(s)	552, 1063, 2346
OliI	CACNNNNGTG	1 cut(s)	1280
PagI	TCATGA	3 cut(s)	430, 847, 2031
PciSI	GCTCTTC	2 cut(s)	467, 1715
PcsI	WCGNNNNNNNCGW	1 cut(s)	2800
PctI	GAATGC	3 cut(s)	505, 1479, 2322
PdmI	GAANNNNTTC	1 cut(s)	1613
PfeI	GAWTC	4 cut(s)	1338, 2084, 2424, 2495
PflFI	GACNNNGTC	1 cut(s)	2808
PinAI	ACCGGT	1 cut(s)	2612
PkrI	GCNGC	4 cut(s)	364, 616, 2396, 2848
PleI	GAGTC	4 cut(s)	2592, 2770, 2846, 2972
PmaCI	CACGTG	1 cut(s)	2875
PmlI	CACGTG	1 cut(s)	2875
PpsI	GAGTC	4 cut(s)	2592, 2770, 2846, 2972
Ppu21I	YACGTR	1 cut(s)	2875
PsiI	TTATAA	2 cut(s)	1523, 2199
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	7 cut(s)	529, 1468, 1495, 1547, 2177, 2224, 2806
PspCI	CACGTG	1 cut(s)	2875
PspGI	CCWGG	7 cut(s)	529, 1468, 1495, 1547, 2177, 2224, 2806
PspN4I	GGNNCC	6 cut(s)	138, 261, 294, 450, 2330, 2692
PspPI	GGNCC	2 cut(s)	371, 1112
PsrI	GAACNNNNNNTAC	2 cut(s)	1733, 1765
PstI	CTGCAG	1 cut(s)	1815
PsuI	RGATCY	4 cut(s)	1048, 1972, 2161, 2968
PsyI	GACNNNGTC	1 cut(s)	2808
PvuII	CAGCTG	1 cut(s)	1121
RsaI	GTAC	5 cut(s)	573, 1270, 1899, 2043, 2157
RsaNI	GTAC	5 cut(s)	572, 1269, 1898, 2042, 2156
RseI	CAYNNNNRTG	6 cut(s)	170, 332, 657, 852, 1087, 1280
SacI	GAGCTC	1 cut(s)	479
SacII	CCGCGG	1 cut(s)	1295
SapI	GCTCTTC	2 cut(s)	467, 1715
SatI	GCNGC	4 cut(s)	363, 615, 2395, 2847
Sau96I	GGNCC	2 cut(s)	371, 1112
SchI	GAGTC	4 cut(s)	2593, 2770, 2846, 2972
ScrFI	CCNGG	9 cut(s)	531, 1470, 1497, 1549, 2011, 2012, 2179, 2226, 2808
SduI	GDGCHC	5 cut(s)	479, 581, 2190, 2829, 2880
SexAI	ACCWGGT	1 cut(s)	2806
SfaNI	GCATC	9 cut(s)	127, 537, 1015, 1048, 1288, 1549, 1734, 2353, 2662
SfcI	CTRYAG	4 cut(s)	306, 1811, 2833, 2964
Sfr303I	CCGCGG	1 cut(s)	1295
SgrBI	CCGCGG	1 cut(s)	1295
SinI	GGWCC	2 cut(s)	371, 1112
SmaI	CCCGGG	1 cut(s)	2012
SmiMI	CAYNNNNRTG	6 cut(s)	170, 332, 657, 852, 1087, 1280
SmlI	CTYRAG	1 cut(s)	2117
SmoI	CTYRAG	1 cut(s)	2117
SsiI	CCGC	4 cut(s)	1292, 1294, 1678, 2026
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	9 cut(s)	50, 206, 635, 701, 842, 1134, 1563, 1824, 2102
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	9 cut(s)	529, 1468, 1495, 1547, 2009, 2010, 2177, 2224, 2806
StyI	CCWWGG	5 cut(s)	1095, 1665, 1856, 2415, 2889
TaaI	ACNGT	6 cut(s)	11, 569, 1689, 1749, 2401, 2965
TaiI	ACGT	4 cut(s)	325, 2797, 2832, 2877
TaqI	TCGA	6 cut(s)	110, 2097, 2167, 2422, 2803, 2916
TaqII	GACCGA	1 cut(s)	1100
TatI	WGTACW	4 cut(s)	571, 1268, 1897, 2155
TfiI	GAWTC	4 cut(s)	1338, 2084, 2424, 2495
TscAI	CASTG	3 cut(s)	778, 1914, 2778
TseFI	GTSAC	4 cut(s)	650, 1847, 2204, 2773
TseI	GCWGC	4 cut(s)	362, 614, 2394, 2846
Tsp45I	GTSAC	4 cut(s)	650, 1847, 2204, 2773
TspGWI	ACGGA	2 cut(s)	596, 2059
TspMI	CCCGGG	1 cut(s)	2010
TspRI	CASTG	3 cut(s)	778, 1914, 2778
Tth111I	GACNNNGTC	1 cut(s)	2808
VneI	GTGCAC	1 cut(s)	2825
VpaK11BI	GGWCC	2 cut(s)	371, 1112
XagI	CCTNNNNNAGG	1 cut(s)	1500
XapI	RAATTY	6 cut(s)	37, 1376, 1806, 2279, 2440, 2465
XbaI	TCTAGA	1 cut(s)	634
XmaI	CCCGGG	1 cut(s)	2010
XmnI	GAANNNNTTC	1 cut(s)	1613
XspI	CTAG	9 cut(s)	50, 206, 635, 701, 842, 1134, 1563, 1824, 2102
Zsp2I	ATGCAT	3 cut(s)	552, 1063, 2346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.