Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001815

Physical Location & Seq

Genomic Coordinates Reverse (-)

9383730 .. 9393372

Gene Structure 9643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1068100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2628 bp

ATGAAACTCTGTTTGGACGGAAAGAATTATGATGGCTTGGACATCTCTGTAAGTAAGCATGATGAAGTTGTAGAGAAGAAACCTAAGTCTACTTCAGAAGTTGTTGACTACACTGATCCATTTGCCATACGGAACTTGCTGGAGAGGTTAGACTGTGGTGAATATGGAAGTGTTACAAAGGAGATAGAGGCAGTTCTTGCTAAAAAGACCCAAACTATGGTCCCTTATTTTGCAAAGTATCCTGCACTGGCAAATGCATTCTTGGAGGAAGACAAAAGGCAGAGTAAAAAGGCTCCCAAATCTGAAAATCCACTAGCTAGTGATAAAGTCATTGATCTGGAGGATGACTGCGTTGAAAATAATGCTCCAGCATCACTGAGGCCTGTGGTAATCATTGATTCAGATGAGGAACAAAGTGAAGATCCGAGATCTTATCCTTTCAAAGAGGTTGTCTTGCCACAGCCATCATATTCTTTCCAGGAGGTTTTCTTGGGACAATCGTCAGAACAGAATTCCATGAATAAAGCAGTGGAAAGAGACTTTTTGGAGAACAGACTTCCAGGTGAAAAACCAAGTCTGTCCAGTGAAACAGGAATCAAGAATCACCCAGGAATTTATGTTGGTGTAGAAGATGATGGTGATTACCAGACAGATGTTGAAGAAGATGATGGTCTGGGAGATATTTGGAATGAAATGTCAATGGGTTTAGAAACTAACAAGGATGCTGCTGTGGAAGGAATGAGTGGCGGGGAAGAGGAAGGTGACTGTGATCATTCTTTTGTCTTGAAGGATGATATTGGATATGTTTGCCGCATTTGTGGGGTTATTGACAGAGCAATTGAGACGATATTTGAGTTTCAGTATAACAAGGTCAAAAGGAGTACAAGAACTTACATGCCTGATTCTCGGAATGGCAAAGAAAGAGATTCAGCCGAGATAGATGGATTTAAATTGTCAGAGGATGGTTTGATACTAACTGAGATATCTGCTCACCCAAGACATATGAAACAAATGAAACCTCATCAAGTGGAGGGTTTCAATTTTCTTGTTAGCAACTTGGTTGGCGATAATCCTGGTGGTTGCATCTTGGCCCATGCTCCAGGTTCTGGTAAAACATTTATGATAATAAGTTTCATGCAAAGTTTTCTAGCTAAGTATCCAAATGCAAGACCCCTGATTGTTCTTCCTAAAGGAATCCTGGATACGTGGAAAAAGGAGTTTAAAATTTGGCAAGTGGAGGATATTCCATTAATTGATTTCTATGAAAATAAAGCAGACAATCGATCACAGCAGCTGGAGGTGTTGAAACAATGGGTGGAGCACAAGAGTATCCTTTTCTTAGGGTACAAGCAATTCTCCTCTATTGTTTGTGATCGAGAAACTAGCAAGGTATCAACTGCGTGCCAAGAAATATTGCTGAAGGCACCTTCAATTCTTATTCTGGATGAAGGGCATACTCCAAGAAATGATAACACTGACGTGTTCCAATCCCTTGCAAAGCTGCAGACACCTAGGAAAGTTGTACTTTCTGGAACCATTTTCCAAAATCATGTCAACGAAGTATTCAACCTTTTGAATCTTGTTCGTCCTAAGTTTTTAAGAGCAGAAACATCCCGACCCATCATCAAGCGGATCATGAGTAGAGTGCATATACCAGGTGTAAGGAAGCAGTTCAAAGCTGGCAGTGAATCAGCCTTCTATGAACTAGTGGAGCATACTCTACAGAAGGATAATGATTTTCGAAGGAAAGTCACTGTCATACACGAATTGCGTGAGATGACTAGCAAGGTGCTTCATTATTACAAAGGAGATACCCTCGATGAACTTCCTGGGCTAGTTGATTTCACTGTGGTACTAAATCTCACCCCCAAGCAGAAGCACGAGACTGAGAAGTTAAAGAAGTTTGCAAGAAAGTTCAAGCAAAATGCTGTTGGAAGCGCTGTTTATCTTCACCCAAAACTGTCCAACTTGGCTTGGAAGCCTACTGATCCAGATGACAGAGTGGATGAGCTCTTGGACAAAATAGATGTGAAAGATGGAGTCAAGGCAAGATTCTTTCTTAATATACTGAACTTATGTGAGTCAGCGGGTGAGAAACTTTTAGTTTTCAGTCAGTACCTCCTACCACTGAAATTTTTGGAGAGATTAGTAGTCAGAATGAAGGGGTGGAGCGCTGGGAGAGAAATGTTTGTGATCTCAGGTGAGTCAAGCTCTGAGCAACGGGAATGGTCTATGGATAGATTTAACAATTCCCCCACCGCCAAGGTTTTCTTCGGCTCAATTAAGGCTTGTGGGGAGGGTATATCGTTGGTAGGGGCTTCTCGACTAATACTTCTGGATGTACATCTTAACCCCTCAGTGAGCAGGCAGGCCATCGGTCGTGCATTTAGACCAGGTCAGAAGAAGAAAGTTTTCGTGTATAGATTGGTAGCTGCTAATTCTCCTGAAGAGGAAGATCATAGCACTTGCTTCCAAAAAGAAACAATTGCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTTTCCGGGATTTTGAAGTGGAGACCATTGATGTGAATGAGAGTGATGATCCCTTCCTCGAAAGTCCAGTGTTGAGGGAGGATGTGAAGCTTCTGTACAGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

876

Amino Acids

99.51

Weight (kDa)

5.53

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	337 - 513	1.6e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	341 - 627	1.3e-26	SNF2-related domain
Helicase_C	PF00271	686 - 799	3.1e-12	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16390 AT2G16390 AT2G21450 AT2G21450 AT2G21450 AT2G21455
fragaria_vesca	FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760
malus_domestica	MD05G1059900.v1.1 MD10G1068100.v1.1
prunus_persica	Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1
pyrus_communis	pycom05g05130 pycom10g05390
rosa_chinensis	RchiOBHm_Chr6g0266061 RchiOBHm_Chr6g0266081
rosa_laevigata	RLG00000014118 RLG00000014121
rosa_multiflora	Rmu_sc0000776.1_g000029 Rmu_sc0000776.1_g000037
rosa_roxburghii	Rroxscaffold_174G00435180 Rroxscaffold_174G00435190 Rroxscaffold_7G00201990 Rroxscaffold_7G00202000
rosa_rugosa	Rorug06G0023000 Rorug06G0023700
rosa_samantha	Rh6AG144300 Rh6AG144400 Rh6BG144700 Rh6BG144900 Rh6CG141400 Rh6CG141600 Rh6DG129100 Rh6DG129200
rosa_wichuraiana	Rw1G008890 Rw6G012470 Rw6G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1423
AccB7I	CCANNNNNTGG	2 cut(s)	217, 1106
AccI	GTMKAC	1 cut(s)	89
AciI	CCGC	5 cut(s)	747, 811, 1630, 2087, 2259
AclWI	GGATC	5 cut(s)	110, 416, 1640, 1982, 2564
AcsI	RAATTY	4 cut(s)	511, 612, 1224, 2132
AcuI	CTGAAG	3 cut(s)	78, 1439, 2466
AfaI	GTAC	7 cut(s)	883, 1346, 1524, 1854, 2117, 2343, 2618
AfeI	AGCGCT	2 cut(s)	1939, 2173
AfiI	CCNNNNNNNGG	2 cut(s)	217, 1106
AflIII	ACRYGT	1 cut(s)	1479
AhlI	ACTAGT	1 cut(s)	1705
AjiI	CACGTC	1 cut(s)	1480
AjnI	CCWGG	9 cut(s)	477, 559, 607, 1072, 1099, 1197, 1654, 1828, 2392
AjuI	GAANNNNNNNTTGG	3 cut(s)	28, 2255, 2287
AleI	CACNNNNGTG	1 cut(s)	1478
AluBI	AGCT	9 cut(s)	317, 1151, 1294, 1501, 1679, 2011, 2211, 2432, 2611
AluI	AGCT	9 cut(s)	317, 1151, 1294, 1501, 1679, 2011, 2211, 2432, 2611
Alw21I	GWGCWC	2 cut(s)	1323, 2013
Alw26I	GTCTC	4 cut(s)	531, 836, 1877, 2537
AlwI	GGATC	5 cut(s)	110, 416, 1640, 1982, 2564
AlwNI	CAGNNNCTG	2 cut(s)	1106, 1294
Aor51HI	AGCGCT	2 cut(s)	1939, 2173
AoxI	GGCC	3 cut(s)	380, 1089, 2370
ApeKI	GCWGC	4 cut(s)	725, 1291, 1501, 2432
ApoI	RAATTY	4 cut(s)	511, 612, 1224, 2132
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AseI	ATTAAT	1 cut(s)	1250
Asp700I	GAANNNNTTC	2 cut(s)	1670, 2411
AspA2I	CCTAGG	1 cut(s)	1511
AspLEI	GCGC	2 cut(s)	1940, 2174
AspS9I	GGNCC	2 cut(s)	220, 1090
AsuC2I	CCSGG	1 cut(s)	2528
AsuII	TTCGAA	1 cut(s)	1741
AvaII	GGWCC	1 cut(s)	220
AvrII	CCTAGG	1 cut(s)	1511
BaeI	ACNNNNGTAYC	2 cut(s)	1312, 1345
BanI	GGYRCC	1 cut(s)	1423
BanII	GRGCYC	1 cut(s)	2013
BarI	GAAGNNNNNNTAC	1 cut(s)	2600
BauI	CACGAG	1 cut(s)	1880
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	2 cut(s)	1323, 2013
BbvI	GCAGC	4 cut(s)	712, 1303, 1488, 2419
BccI	CCATC	9 cut(s)	26, 472, 629, 662, 935, 956, 1628, 2030, 2381
BciT130I	CCWGG	9 cut(s)	479, 561, 609, 1074, 1101, 1199, 1656, 1830, 2394
BciVI	GTATCC	4 cut(s)	249, 1167, 1195, 1340
BclI	TGATCA	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	2528
BcoDI	GTCTC	4 cut(s)	531, 836, 1877, 2537
BcuI	ACTAGT	1 cut(s)	1705
BfaI	CTAG	8 cut(s)	314, 318, 1148, 1383, 1512, 1706, 1782, 1835
BfmI	CTRYAG	2 cut(s)	1502, 1721
BfoI	RGCGCY	2 cut(s)	1941, 2175
BfuI	GTATCC	4 cut(s)	249, 1167, 1195, 1340
BglII	AGATCT	1 cut(s)	428
BisI	GCNGC	5 cut(s)	726, 811, 1292, 1502, 2433
BlnI	CCTAGG	1 cut(s)	1511
BlsI	GCNGC	5 cut(s)	727, 812, 1293, 1503, 2434
Bme18I	GGWCC	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	1480
BmgT120I	GGNCC	2 cut(s)	220, 1090
BmiI	GGNNCC	4 cut(s)	222, 294, 1425, 1534
BmsI	GCATC	3 cut(s)	380, 712, 1092
BoxI	GACNNNNGTC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	4 cut(s)	1800, 1832, 2195, 2227
BpmI	CTGGAG	5 cut(s)	161, 351, 359, 1083, 1316
Bpu14I	TTCGAA	1 cut(s)	1741
BpuMI	CCSGG	1 cut(s)	2528
Bsa29I	ATCGAT	1 cut(s)	1282
BsaAI	YACGTR	1 cut(s)	1206
BsaBI	GATNNNNATC	1 cut(s)	2343
BsaI	GGTCTC	1 cut(s)	2537
BsaJI	CCNNGG	4 cut(s)	607, 1511, 1829, 2262
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 1106
Bse1I	ACTGG	3 cut(s)	252, 582, 2588
Bse8I	GATNNNNATC	1 cut(s)	2343
BseBI	CCWGG	9 cut(s)	479, 561, 609, 1074, 1101, 1199, 1656, 1830, 2394
BseCI	ATCGAT	1 cut(s)	1282
BseDI	CCNNGG	4 cut(s)	607, 1511, 1829, 2262
BseGI	GGATG	9 cut(s)	349, 727, 796, 967, 1450, 1610, 2011, 2344, 2608
BseJI	GATNNNNATC	1 cut(s)	2343
BseLI	CCNNNNNNNGG	2 cut(s)	217, 1106
BseMII	CTCAG	6 cut(s)	368, 969, 1878, 2205, 2211, 2370
BseNI	ACTGG	3 cut(s)	252, 582, 2588
BseRI	GAGGAG	1 cut(s)	1348
BseXI	GCAGC	4 cut(s)	712, 1303, 1488, 2419
BseYI	CCCAGC	1 cut(s)	2174
BsgI	GTGCAG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	2380
BshFI	GGCC	3 cut(s)	382, 1091, 2372
BshNI	GGYRCC	1 cut(s)	1423
BshVI	ATCGAT	1 cut(s)	1282
BsiEI	CGRYCG	1 cut(s)	2380
BsiHKAI	GWGCWC	2 cut(s)	1323, 2013
BsiSI	CCGG	1 cut(s)	2527
BslFI	GGGAC	2 cut(s)	206, 507
BslI	CCNNNNNNNGG	2 cut(s)	217, 1106
BsmAI	GTCTC	4 cut(s)	531, 836, 1877, 2537
BsmBI	CGTCTC	1 cut(s)	836
BsmFI	GGGAC	2 cut(s)	206, 507
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	382, 1091, 2372
Bso31I	GGTCTC	1 cut(s)	2537
Bsp119I	TTCGAA	1 cut(s)	1741
Bsp1286I	GDGCHC	2 cut(s)	1323, 2013
Bsp1407I	TGTACA	2 cut(s)	2341, 2616
BspACI	CCGC	5 cut(s)	747, 811, 1630, 2087, 2259
BspANI	GGCC	3 cut(s)	382, 1091, 2372
BspCNI	CTCAG	6 cut(s)	369, 970, 1879, 2206, 2210, 2369
BspDI	ATCGAT	1 cut(s)	1282
BspHI	TCATGA	1 cut(s)	1635
BspLI	GGNNCC	4 cut(s)	222, 294, 1425, 1534
BspMAI	CTGCAG	1 cut(s)	1506
BspPI	GGATC	5 cut(s)	110, 416, 1640, 1982, 2564
BspT104I	TTCGAA	1 cut(s)	1741
BspT107I	GGYRCC	1 cut(s)	1423
BspTNI	GGTCTC	1 cut(s)	2537
BsrGI	TGTACA	2 cut(s)	2341, 2616
BsrI	ACTGG	3 cut(s)	252, 582, 2588
BssECI	CCNNGG	4 cut(s)	607, 1511, 1829, 2262
BssSI	CACGAG	1 cut(s)	1880
BssT1I	CCWWGG	2 cut(s)	1511, 2262
Bst2BI	CACGAG	1 cut(s)	1880
Bst2UI	CCWGG	9 cut(s)	479, 561, 609, 1074, 1101, 1199, 1656, 1830, 2394
Bst4CI	ACNGT	5 cut(s)	155, 767, 1756, 1849, 1962
Bst6I	CTCTTC	2 cut(s)	747, 2442
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstAUI	TGTACA	2 cut(s)	2341, 2616
BstBAI	YACGTR	1 cut(s)	1206
BstBI	TTCGAA	1 cut(s)	1741
BstC8I	GCNNGC	4 cut(s)	1402, 1681, 2366, 2370
BstF5I	GGATG	9 cut(s)	349, 727, 796, 967, 1450, 1610, 2011, 2344, 2608
BstH2I	RGCGCY	2 cut(s)	1941, 2175
BstHHI	GCGC	2 cut(s)	1940, 2174
BstMAI	GTCTC	4 cut(s)	531, 836, 1877, 2537
BstMCI	CGRYCG	1 cut(s)	2380
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	9 cut(s)	479, 561, 609, 1074, 1101, 1199, 1656, 1830, 2394
BstNSI	RCATGY	1 cut(s)	898
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSFI	CTRYAG	2 cut(s)	1502, 1721
BstV1I	GCAGC	4 cut(s)	712, 1303, 1488, 2419
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	421, 428
BstYI	RGATCY	2 cut(s)	421, 428
Bsu15I	ATCGAT	1 cut(s)	1282
BsuI	GTATCC	4 cut(s)	249, 1167, 1195, 1340
BsuRI	GGCC	3 cut(s)	382, 1091, 2372
BsuTUI	ATCGAT	1 cut(s)	1282
BtrI	CACGTC	1 cut(s)	1480
BtsCI	GGATG	9 cut(s)	349, 727, 796, 967, 1450, 1610, 2011, 2344, 2608
BtsI	GCAGTG	2 cut(s)	534, 1690
Cac8I	GCNNGC	4 cut(s)	1402, 1681, 2366, 2370
CaiI	CAGNNNCTG	2 cut(s)	1106, 1294
CciI	TCATGA	1 cut(s)	1635
CfoI	GCGC	2 cut(s)	1940, 2174
Cfr13I	GGNCC	2 cut(s)	220, 1090
ClaI	ATCGAT	1 cut(s)	1282
CsiI	ACCWGGT	2 cut(s)	1654, 2392
Csp6I	GTAC	7 cut(s)	882, 1345, 1523, 1853, 2116, 2342, 2617
CviAII	CATG	7 cut(s)	59, 517, 895, 1094, 1135, 1550, 1636
CviQI	GTAC	7 cut(s)	882, 1345, 1523, 1853, 2116, 2342, 2617
DraI	TTTAAA	2 cut(s)	949, 1222
Eam1104I	CTCTTC	2 cut(s)	747, 2442
EarI	CTCTTC	2 cut(s)	747, 2442
Ecl136II	GAGCTC	1 cut(s)	2011
Eco130I	CCWWGG	2 cut(s)	1511, 2262
Eco147I	AGGCCT	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	2013
Eco31I	GGTCTC	1 cut(s)	2537
Eco32I	GATATC	1 cut(s)	984
Eco47I	GGWCC	1 cut(s)	220
Eco47III	AGCGCT	2 cut(s)	1939, 2173
Eco53kI	GAGCTC	1 cut(s)	2011
Eco57I	CTGAAG	3 cut(s)	78, 1439, 2466
EcoICRI	GAGCTC	1 cut(s)	2011
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	9 cut(s)	477, 559, 607, 1072, 1099, 1197, 1654, 1828, 2392
EcoRV	GATATC	1 cut(s)	984
EcoT14I	CCWWGG	2 cut(s)	1511, 2262
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	2013
ErhI	CCWWGG	2 cut(s)	1511, 2262
Esp3I	CGTCTC	1 cut(s)	836
FaeI	CATG	7 cut(s)	62, 520, 898, 1097, 1138, 1553, 1639
FalI	AAGNNNNNCTT	4 cut(s)	1509, 1541, 2255, 2287
FaqI	GGGAC	2 cut(s)	206, 507
FatI	CATG	7 cut(s)	58, 516, 894, 1093, 1134, 1549, 1635
FauI	CCCGC	2 cut(s)	740, 2080
FauNDI	CATATG	1 cut(s)	1002
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	5 cut(s)	726, 811, 1292, 1502, 2433
FokI	GGATG	9 cut(s)	356, 734, 803, 974, 1457, 1597, 2018, 2351, 2615
FriOI	GRGCYC	1 cut(s)	2013
Fsp4HI	GCNGC	5 cut(s)	726, 811, 1292, 1502, 2433
FspBI	CTAG	8 cut(s)	314, 318, 1148, 1383, 1512, 1706, 1782, 1835
GlaI	GCGC	2 cut(s)	1939, 2173
GluI	GCNGC	5 cut(s)	726, 811, 1292, 1502, 2433
GsaI	CCCAGC	1 cut(s)	2178
GsuI	CTGGAG	5 cut(s)	161, 351, 359, 1083, 1316
HaeII	RGCGCY	2 cut(s)	1941, 2175
HaeIII	GGCC	3 cut(s)	382, 1091, 2372
HapII	CCGG	1 cut(s)	2527
HhaI	GCGC	2 cut(s)	1940, 2174
Hin1II	CATG	7 cut(s)	62, 520, 898, 1097, 1138, 1553, 1639
Hin6I	GCGC	2 cut(s)	1938, 2172
HinP1I	GCGC	2 cut(s)	1938, 2172
HincII	GTYRAC	2 cut(s)	106, 1555
HindII	GTYRAC	2 cut(s)	106, 1555
HindIII	AAGCTT	1 cut(s)	2609
HpaII	CCGG	1 cut(s)	2527
Hpy166II	GTNNAC	3 cut(s)	90, 106, 1555
Hpy8I	GTNNAC	3 cut(s)	90, 106, 1555
HpyCH4III	ACNGT	5 cut(s)	155, 767, 1756, 1849, 1962
HpyCH4IV	ACGT	2 cut(s)	1205, 1479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpySE526I	ACGT	2 cut(s)	1205, 1479
Hsp92II	CATG	7 cut(s)	62, 520, 898, 1097, 1138, 1553, 1639
HspAI	GCGC	2 cut(s)	1938, 2172
Ksp22I	TGATCA	1 cut(s)	769
LmnI	GCTCC	6 cut(s)	298, 370, 1102, 1318, 1711, 2169
Lsp1109I	GCAGC	4 cut(s)	712, 1303, 1488, 2419
LweI	GCATC	3 cut(s)	380, 712, 1092
MabI	ACCWGGT	2 cut(s)	1654, 2392
MaeI	CTAG	8 cut(s)	314, 318, 1148, 1383, 1512, 1706, 1782, 1835
MaeII	ACGT	2 cut(s)	1205, 1479
MaeIII	GTNAC	3 cut(s)	172, 761, 1750
MfeI	CAATTG	2 cut(s)	837, 2484
MflI	RGATCY	2 cut(s)	421, 428
MhlI	GDGCHC	2 cut(s)	1323, 2013
MlyI	GAGTC	3 cut(s)	2049, 2090, 2213
MmeI	TCCRAC	2 cut(s)	1912, 1989
Mph1103I	ATGCAT	1 cut(s)	259
MroXI	GAANNNNTTC	2 cut(s)	1670, 2411
MseI	TTAA	9 cut(s)	948, 1221, 1250, 1598, 1895, 2061, 2244, 2283, 2349
MslI	CAYNNNNRTG	2 cut(s)	1478, 2552
MspA1I	CMGCKG	2 cut(s)	1294, 2087
MspI	CCGG	1 cut(s)	2527
MunI	CAATTG	2 cut(s)	837, 2484
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	9 cut(s)	479, 561, 609, 1074, 1101, 1199, 1656, 1830, 2394
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	2528
NdeI	CATATG	1 cut(s)	1002
NlaIII	CATG	7 cut(s)	62, 520, 898, 1097, 1138, 1553, 1639
NlaIV	GGNNCC	4 cut(s)	222, 294, 1425, 1534
NmeAIII	GCCGAG	1 cut(s)	958
NmuCI	GTSAC	2 cut(s)	761, 1750
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	1 cut(s)	898
NspV	TTCGAA	1 cut(s)	1741
OliI	CACNNNNGTG	1 cut(s)	1478
PagI	TCATGA	1 cut(s)	1635
PceI	AGGCCT	1 cut(s)	382
PctI	GAATGC	1 cut(s)	257
PdmI	GAANNNNTTC	2 cut(s)	1670, 2411
PfeI	GAWTC	9 cut(s)	398, 594, 601, 902, 926, 1194, 1576, 1688, 2052
PflFI	GACNNNGTC	1 cut(s)	2394
PflMI	CCANNNNNTGG	2 cut(s)	217, 1106
PfoI	TCCNGGA	3 cut(s)	477, 1197, 2526
PkrI	GCNGC	5 cut(s)	727, 812, 1293, 1503, 2434
PleI	GAGTC	3 cut(s)	2048, 2089, 2212
PpsI	GAGTC	3 cut(s)	2048, 2089, 2212
Ppu21I	YACGTR	1 cut(s)	1206
PshAI	GACNNNNGTC	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	1250
Psp124BI	GAGCTC	1 cut(s)	2013
Psp6I	CCWGG	9 cut(s)	477, 559, 607, 1072, 1099, 1197, 1654, 1828, 2392
PspFI	CCCAGC	1 cut(s)	2174
PspGI	CCWGG	9 cut(s)	477, 559, 607, 1072, 1099, 1197, 1654, 1828, 2392
PspN4I	GGNNCC	4 cut(s)	222, 294, 1425, 1534
PspPI	GGNCC	2 cut(s)	220, 1090
PstI	CTGCAG	1 cut(s)	1506
PstNI	CAGNNNCTG	2 cut(s)	1106, 1294
PsuI	RGATCY	2 cut(s)	421, 428
PsyI	GACNNNGTC	1 cut(s)	2394
PvuII	CAGCTG	1 cut(s)	1294
RsaI	GTAC	7 cut(s)	883, 1346, 1524, 1854, 2117, 2343, 2618
RsaNI	GTAC	7 cut(s)	882, 1345, 1523, 1853, 2116, 2342, 2617
RseI	CAYNNNNRTG	2 cut(s)	1478, 2552
SacI	GAGCTC	1 cut(s)	2013
SaqAI	TTAA	9 cut(s)	948, 1221, 1250, 1598, 1895, 2061, 2244, 2283, 2349
SatI	GCNGC	5 cut(s)	726, 811, 1292, 1502, 2433
Sau96I	GGNCC	2 cut(s)	220, 1090
SchI	GAGTC	3 cut(s)	2049, 2090, 2213
SduI	GDGCHC	2 cut(s)	1323, 2013
SexAI	ACCWGGT	2 cut(s)	1654, 2392
SfaNI	GCATC	3 cut(s)	380, 712, 1092
SfcI	CTRYAG	2 cut(s)	1502, 1721
SfuI	TTCGAA	1 cut(s)	1741
SinI	GGWCC	1 cut(s)	220
SmiI	ATTTAAAT	1 cut(s)	949
SmiMI	CAYNNNNRTG	2 cut(s)	1478, 2552
SpeI	ACTAGT	1 cut(s)	1705
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	5 cut(s)	747, 811, 1630, 2087, 2259
SspI	AATATT	2 cut(s)	1413, 2516
SspMI	CTAG	8 cut(s)	314, 318, 1148, 1383, 1512, 1706, 1782, 1835
SstI	GAGCTC	1 cut(s)	2013
StuI	AGGCCT	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	1511, 2262
SwaI	ATTTAAAT	1 cut(s)	949
TaaI	ACNGT	5 cut(s)	155, 767, 1756, 1849, 1962
TaiI	ACGT	2 cut(s)	1208, 1482
TaqI	TCGA	6 cut(s)	1282, 1375, 1741, 1818, 2323, 2580
TaqII	GACCGA	1 cut(s)	2366
TatI	WGTACW	4 cut(s)	881, 1522, 2341, 2616
TauI	GCSGC	1 cut(s)	813
TfiI	GAWTC	9 cut(s)	398, 594, 601, 902, 926, 1194, 1576, 1688, 2052
Tru1I	TTAA	9 cut(s)	948, 1221, 1250, 1598, 1895, 2061, 2244, 2283, 2349
Tru9I	TTAA	9 cut(s)	948, 1221, 1250, 1598, 1895, 2061, 2244, 2283, 2349
TseFI	GTSAC	2 cut(s)	761, 1750
TseI	GCWGC	4 cut(s)	725, 1291, 1501, 2432
Tsp45I	GTSAC	2 cut(s)	761, 1750
TspGWI	ACGGA	2 cut(s)	33, 145
Tth111I	GACNNNGTC	1 cut(s)	2394
Van91I	CCANNNNNTGG	2 cut(s)	217, 1106
VpaK11BI	GGWCC	1 cut(s)	220
VspI	ATTAAT	1 cut(s)	1250
XapI	RAATTY	4 cut(s)	511, 612, 1224, 2132
XceI	RCATGY	1 cut(s)	898
XmaJI	CCTAGG	1 cut(s)	1511
XmiI	GTMKAC	1 cut(s)	89
XmnI	GAANNNNTTC	2 cut(s)	1670, 2411
XspI	CTAG	8 cut(s)	314, 318, 1148, 1383, 1512, 1706, 1782, 1835
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.