Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001815

Physical Location & Seq

Genomic Coordinates Reverse (-)

47606568 .. 47610768

Gene Structure 4201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGGCACTAGCACAACCTGTCATTGACCTTAGTTCCAATGGTGAAGACAATGGTAGGAGGAGGTCATTGAATGTGCATCAGAAGATAAAGCTGGAACCTCCTCCGGAACACCATCAACAGGTCGTGGATATGGAGGTTCAGTATCCAAACAATCTTACAGCACTAGCACCTCCTGCCATTGTCCTTAGTTCTGATGATGAAGACAATGGAAGTAGGGAGCCACTTCATCTGTATCCGAAGATTGTATTGGAGCCTCCTCCTCCTACAGAACATGATCAACGTGTCATTGATATGGAAACTAAATCTTCAAACAATATTGCAGCAGTAGGACCATCTGTGGTTTTCCTTAGTTCCGACGATGAAGATGATGAGAGTAGGATGATATTTCATGAGAAGGTTGTCTTGGAGCCTGTTGATAGACTTCTAAAGAAGAGCTCTATGGATAGTGTAGAGATGAATGATCAAAGAAAAGAGTTGGAAACTATACCTGGATTGAATATGGGGATGGATAAAGACATAGAGGACGTTTTAGAGAGCACGGATCATATCTGGATAGATAAAGATGTAGACGTTGGTGCAGCAGAAGATGTGACCGGTCTAGAACTCATTGATTGTCACGGGCATGATATTCTGGTTCAGGATTGTTTAGCAAGCAAACATCAAATAGAAGAGTTGAAAACATTGGCCGAAAAAAATTTAGATATTGATGAAGACAGAACTTCTGAAAAGGAATTCAGTGATCAAAGTAATTCTGAAAGTATAGAAGATATACAGAGCATAGCTCCAAGCACAGAGGTCGGAACTGTAGTTCATGAAAATGATATGGTGGCTGGGGAAGGTAATGTGGAAGATGATATGAAGGAAGGTGATAAAATCAATGTCGAGGCAGATGATAGACATGACACTGAGGAAGATGATGAAAACGACAAGGAAGATGATCTGAGCGGTATTGAGGAAGAGGATGTAAATGATATTGAGGAAGATGATGTAAATGATATTGAGGAAGATAATGCAAATGATATTGAGGGAGAGGATCTAACAGATGCATGGAACGAGATGACAATGGCGTTAGAATGTGCCAAGGATATTGCTGTCGATCCTTCAGCTGATGAGCCATCTAGTGAATGCGGGGAAGAATGTGATCACTACTTCATTTTGAAGGATGATCTTGGGTTAGTGTGTCGTATTTGTGGAGTTATTCAGAAGGGGATTGATACCATATTTGAGTTCCAATATAATAAGGGAAAAAGGAGTACACGCACTTATGTGCAAGAGCCGCGGGATGCCAACACAGAGCCAACTGAGAGTTCCTCACTTGGAGTCAAGTTTACTACTGGGCGTGATTTAATGGAAACAGAATTTTCTGCTCATCCAAGTCATAGAAAGCACATGAAACCACATCAAGTAGAGGGGTTTAATTTTCTCTGTAGCAATTTGTTGGGAGACAACCCAGGTGGTTGCATTCTTGCTCATGCCCCTGGTTCAGGAAAGACTTTTCTGGTTATAAGTTTTGTCCAGAGTTACTTAGCCAGGTTTCCCCATGCTAGACCACTTGTTGTTCTACCTAAAACCATTTTGGATACATGGAAGAAAGAGTTCCGGATATGGCAAGTTGAGGATATTCCTTTGCATGATTTCTATACTTCCAAGGCAGACAAGCGGTTTCAACAGTTGAACGTATTAAAACAATGGGTAGAGCAGAAGAGCATCCTTTTCTTAGGGTACCAACAGTTCTCTACTATAATGTGCGACATTGGGAGTAGCAAGACAACGGATAAATGCCGAGAAATTCTGCAGAAGTCCCCTAGTCTTCTCATATTGGATGAAGGTCACACACCAAGGAATGATGAAACTAATCAGTTTCAAGCTCTTGTAAGAGTACAGACCCCACTGAAAGTAGTTCTCTCAGGAACACTCTATCAAAACCATGTCAAAGAAGTCTTCACTCTCTTAGATCTTGTTCGTCCAAAGTTTCTGAAATTGGACACTTCCCGGGAGATTGTGAAGCGGATCATGAGCATAGTACGGATATCGGGTGTGAGGAAACAGTTAAAAGGTGGAGGAGATTCAGCTTTTTTTGATTTAGTAGAGCATACCCTCAAGAAAGATGAAGACTTTAAGAGGAAAGTAGCTATTGTACAAGATCTTCGAGAAATGACCAGGAAGGTGCTCCATTATTATAAAGGTGACTTTTTAGATGAACTTCCTGGGCTTGTTGAGTTCACACTACTACTCGGCCTCACTTCAAGACAGAAAGCTGAATTTGAAAAATTGAAGGGATTGGACAAGTTAAGGAGAATGCCTGTGGGGAGCCTTGTCTCCATGCATCCAGAGTTGAGATATCTTTCAGAGAAAAATCCATCAACTGAGAAGGGCTGCACAGTTGATAATAAGACGATGGATCGATTCTTAGAAAAGTTAAATTTTAGAGATGGAGTAAAAGCTAAATTCTTTCTTAATATGCTTGCATTGTGTGAATCAAATGATGAGAAGCTACTGGTTTTCAGCCAATATCTCCTGCCCCTGAAACTTATGGAGAGATTAGCTGTGAAGGAAATGGGTTGGAGTCTCAACAAGGAGATTTTTGTGTTAACCGGTGATACAAACTCTAAGCAAAAAGAATGGTCTATGGAACTCTTTAACACCTCACCGGATGCTAAAGTGTTATTTGGTTCCATTAGAGCTTGTGGGGAAGGTATCTCGCTTGTGGGAGCTTCGCGTGTCCTTATTATGGAAGTCCAGCTCAACCCTTCAGTGACTCGGCAAGCAATCGGACGTGCATTTCGACCAGGTCAGAAGAAGAAAGTGCATGTCTATAGATTGGTTGCTGCTGACTCACCAGAGGAGGATGACCACGTGCTCTCTTATACTAAGGAGATGATATCAAAGATATGGTTCGAGTGGACTGAGAGCTGTGGACATCAAGACTACTCTGGTATGAAGACTGTAGATCTAAATGACTCTGGTGATATGTTCTTGGAAAGTCAGTTGTTGAAGGAAGATATAAAGGTTTTGCAGAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1009

Amino Acids

114.32

Weight (kDa)

4.81

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	463 - 639	1.6e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	467 - 757	2.3e-24	SNF2-related domain
Helicase_C	PF00271	816 - 931	3.3e-12	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16390 AT2G16390 AT2G21450 AT2G21450 AT2G21450 AT2G21455
fragaria_vesca	FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760
malus_domestica	MD05G1059900.v1.1 MD10G1068100.v1.1
prunus_persica	Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1
pyrus_communis	pycom05g05130 pycom10g05390
rosa_chinensis	RchiOBHm_Chr6g0266061 RchiOBHm_Chr6g0266081
rosa_laevigata	RLG00000014118 RLG00000014121
rosa_multiflora	Rmu_sc0000776.1_g000029 Rmu_sc0000776.1_g000037
rosa_roxburghii	Rroxscaffold_174G00435180 Rroxscaffold_174G00435190 Rroxscaffold_7G00201990 Rroxscaffold_7G00202000
rosa_rugosa	Rorug06G0023000 Rorug06G0023700
rosa_samantha	Rh6AG144300 Rh6AG144400 Rh6BG144700 Rh6BG144900 Rh6CG141400 Rh6CG141600 Rh6DG129100 Rh6DG129200
rosa_wichuraiana	Rw1G008890 Rw6G012470 Rw6G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1505, 2181
Acc65I	GGTACC	1 cut(s)	1722
AccB1I	GGYRCC	1 cut(s)	1722
AccBSI	CCGCTC	1 cut(s)	945
AccI	GTMKAC	1 cut(s)	567
AccII	CGCG	2 cut(s)	1279, 2719
AccIII	TCCGGA	2 cut(s)	103, 1599
AciI	CCGC	6 cut(s)	945, 1128, 1277, 1279, 1660, 2008
AclWI	GGATC	5 cut(s)	549, 1041, 1091, 2018, 2409
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	7 cut(s)	694, 731, 1358, 1788, 2261, 2422, 2447
AcuI	CTGAAG	2 cut(s)	1086, 2736
AcvI	CACGTG	1 cut(s)	2857
AfaI	GTAC	5 cut(s)	1255, 1724, 1881, 2025, 2139
AfiI	CCNNNNNNNGG	3 cut(s)	118, 1484, 2731
AflIII	ACRYGT	1 cut(s)	280
AgeI	ACCGGT	2 cut(s)	593, 2594
AjiI	CACGTC	1 cut(s)	2777
AjnI	CCWGG	7 cut(s)	487, 1450, 1477, 1529, 2159, 2206, 2788
AjuI	GAANNNNNNNTTGG	6 cut(s)	230, 262, 386, 418, 1291, 1323
AleI	CACNNNNGTG	1 cut(s)	1265
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
Alw21I	GWGCWC	4 cut(s)	437, 539, 2172, 2862
Alw26I	GTCTC	3 cut(s)	1437, 2323, 2573
AlwI	GGATC	5 cut(s)	549, 1041, 1091, 2018, 2409
Ama87I	CYCGRG	1 cut(s)	1992
Aor13HI	TCCGGA	2 cut(s)	103, 1599
AoxI	GGCC	2 cut(s)	684, 2236
ApeKI	GCWGC	4 cut(s)	320, 578, 2376, 2828
ApoI	RAATTY	7 cut(s)	694, 731, 1358, 1788, 2261, 2422, 2447
ArsI	GACNNNNNNTTYG	2 cut(s)	2766, 2798
AsiGI	ACCGGT	2 cut(s)	593, 2594
Asp700I	GAANNNNTTC	1 cut(s)	1595
Asp718I	GGTACC	1 cut(s)	1722
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	2 cut(s)	1993, 1994
AsuHPI	GGTGA	7 cut(s)	53, 878, 2198, 2609, 2640, 2829, 2978
AvaI	CYCGRG	1 cut(s)	1992
AvaII	GGWCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	1722
BanII	GRGCYC	1 cut(s)	437
BarI	GAAGNNNNNNTAC	2 cut(s)	2130, 2162
BbrPI	CACGTG	1 cut(s)	2857
BbsI	GAAGAC	7 cut(s)	51, 207, 717, 1802, 1933, 2118, 2948
Bbv12I	GWGCWC	4 cut(s)	437, 539, 2172, 2862
BbvI	GCAGC	4 cut(s)	332, 590, 2363, 2815
BccI	CCATC	7 cut(s)	120, 340, 499, 1123, 2368, 2392, 2426
BcgI	CGANNNNNNTGC	2 cut(s)	778, 812
BciT130I	CCWGG	7 cut(s)	489, 1452, 1479, 1531, 2161, 2208, 2790
BciVI	GTATCC	3 cut(s)	153, 243, 1573
BclI	TGATCA	4 cut(s)	274, 460, 739, 1141
BcnI	CCSGG	2 cut(s)	1993, 1994
BcoDI	GTCTC	3 cut(s)	1437, 2323, 2573
BfaI	CTAG	6 cut(s)	8, 164, 599, 1119, 1545, 1806
BfmI	CTRYAG	6 cut(s)	264, 804, 1426, 1793, 2815, 2946
BfuI	GTATCC	3 cut(s)	153, 243, 1573
BglII	AGATCT	3 cut(s)	1954, 2143, 2950
BisI	GCNGC	5 cut(s)	321, 579, 1277, 2377, 2829
BlsI	GCNGC	5 cut(s)	322, 580, 1278, 2378, 2830
Bme1390I	CCNGG	9 cut(s)	489, 1452, 1479, 1531, 1993, 1994, 2161, 2208, 2790
Bme18I	GGWCC	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	1992
BmgBI	CACGTC	1 cut(s)	2777
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	7 cut(s)	96, 219, 252, 408, 1724, 2312, 2674
BmrFI	CCNGG	9 cut(s)	489, 1452, 1479, 1531, 1993, 1994, 2161, 2208, 2790
BmrI	ACTGGG	1 cut(s)	1344
BmsI	GCATC	6 cut(s)	85, 1033, 1273, 1716, 2335, 2644
BmuI	ACTGGG	1 cut(s)	1344
BpiI	GAAGAC	7 cut(s)	51, 207, 717, 1802, 1933, 2118, 2948
BplI	GAGNNNNNCTC	4 cut(s)	766, 798, 1295, 1327
BpuEI	CTTGAG	1 cut(s)	2084
BpuMI	CCSGG	2 cut(s)	1993, 1994
Bsa29I	ATCGAT	1 cut(s)	2404
BsaAI	YACGTR	1 cut(s)	2857
BsaJI	CCNNGG	8 cut(s)	1080, 1277, 1450, 1477, 1647, 1838, 1992, 2207
BsaWI	WCCGGW	5 cut(s)	103, 593, 1599, 2594, 2650
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 1484, 2731
Bse118I	RCCGGY	2 cut(s)	593, 2594
Bse1I	ACTGG	2 cut(s)	1339, 2502
BseAI	TCCGGA	2 cut(s)	103, 1599
BseBI	CCWGG	7 cut(s)	489, 1452, 1479, 1531, 2161, 2208, 2790
BseCI	ATCGAT	1 cut(s)	2404
BseDI	CCNNGG	8 cut(s)	1080, 1277, 1450, 1477, 1647, 1838, 1992, 2207
BseLI	CCNNNNNNNGG	3 cut(s)	118, 1484, 2731
BseMII	CTCAG	6 cut(s)	897, 932, 1293, 1920, 2358, 2898
BseNI	ACTGG	2 cut(s)	1339, 2502
BseRI	GAGGAG	6 cut(s)	73, 90, 246, 249, 2076, 2858
BseXI	GCAGC	4 cut(s)	332, 590, 2363, 2815
BseYI	CCCAGC	1 cut(s)	830
BsgI	GTGCAG	2 cut(s)	597, 2362
Bsh1236I	CGCG	2 cut(s)	1279, 2719
BshFI	GGCC	2 cut(s)	686, 2238
BshNI	GGYRCC	1 cut(s)	1722
BshTI	ACCGGT	2 cut(s)	593, 2594
BshVI	ATCGAT	1 cut(s)	2404
BsiHKAI	GWGCWC	4 cut(s)	437, 539, 2172, 2862
BsiHKCI	CYCGRG	1 cut(s)	1992
BsiSI	CCGG	6 cut(s)	104, 594, 1600, 1993, 2595, 2651
BslFI	GGGAC	1 cut(s)	1786
BslI	CCNNNNNNNGG	3 cut(s)	118, 1484, 2731
BsmAI	GTCTC	3 cut(s)	1437, 2323, 2573
BsmFI	GGGAC	1 cut(s)	1786
BsmI	GAATGC	3 cut(s)	1130, 1461, 2304
BsnI	GGCC	2 cut(s)	686, 2238
BsoBI	CYCGRG	1 cut(s)	1992
Bsp1286I	GDGCHC	4 cut(s)	437, 539, 2172, 2862
Bsp13I	TCCGGA	2 cut(s)	103, 1599
Bsp1407I	TGTACA	1 cut(s)	2137
BspACI	CCGC	6 cut(s)	945, 1128, 1277, 1279, 1660, 2008
BspANI	GGCC	2 cut(s)	686, 2238
BspCNI	CTCAG	6 cut(s)	898, 933, 1294, 1919, 2359, 2899
BspDI	ATCGAT	1 cut(s)	2404
BspEI	TCCGGA	2 cut(s)	103, 1599
BspFNI	CGCG	2 cut(s)	1279, 2719
BspHI	TCATGA	3 cut(s)	388, 811, 2013
BspLI	GGNNCC	7 cut(s)	96, 219, 252, 408, 1724, 2312, 2674
BspMAI	CTGCAG	1 cut(s)	1797
BspPI	GGATC	5 cut(s)	549, 1041, 1091, 2018, 2409
BspQI	GCTCTTC	2 cut(s)	425, 1697
BspT107I	GGYRCC	1 cut(s)	1722
BsrBI	CCGCTC	1 cut(s)	945
BsrFI	RCCGGY	2 cut(s)	593, 2594
BsrGI	TGTACA	1 cut(s)	2137
BsrI	ACTGG	2 cut(s)	1339, 2502
BssAI	RCCGGY	2 cut(s)	593, 2594
BssECI	CCNNGG	8 cut(s)	1080, 1277, 1450, 1477, 1647, 1838, 1992, 2207
BssT1I	CCWWGG	3 cut(s)	1080, 1647, 1838
Bst2UI	CCWGG	7 cut(s)	489, 1452, 1479, 1531, 2161, 2208, 2790
Bst4CI	ACNGT	6 cut(s)	805, 1671, 1731, 2049, 2383, 2947
Bst6I	CTCTTC	4 cut(s)	425, 663, 951, 1697
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	2137
BstBAI	YACGTR	1 cut(s)	2857
BstC8I	GCNNGC	3 cut(s)	652, 2466, 2766
BstDSI	CCRYGG	1 cut(s)	1277
BstENI	CCTNNNNNAGG	1 cut(s)	1482
BstFNI	CGCG	2 cut(s)	1279, 2719
BstMAI	GTCTC	3 cut(s)	1437, 2323, 2573
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 1276
BstNI	CCWGG	7 cut(s)	489, 1452, 1479, 1531, 2161, 2208, 2790
BstNSI	RCATGY	1 cut(s)	2813
BstSCI	CCNGG	9 cut(s)	487, 1450, 1477, 1529, 1991, 1992, 2159, 2206, 2788
BstSFI	CTRYAG	6 cut(s)	264, 804, 1426, 1793, 2815, 2946
BstUI	CGCG	2 cut(s)	1279, 2719
BstV1I	GCAGC	4 cut(s)	332, 590, 2363, 2815
BstV2I	GAAGAC	7 cut(s)	51, 207, 717, 1802, 1933, 2118, 2948
BstX2I	RGATCY	4 cut(s)	1033, 1954, 2143, 2950
BstYI	RGATCY	4 cut(s)	1033, 1954, 2143, 2950
Bsu15I	ATCGAT	1 cut(s)	2404
BsuI	GTATCC	3 cut(s)	153, 243, 1573
BsuRI	GGCC	2 cut(s)	686, 2238
BsuTUI	ATCGAT	1 cut(s)	2404
BtgI	CCRYGG	1 cut(s)	1277
BtrI	CACGTC	1 cut(s)	2777
BtsIMutI	CAGTG	4 cut(s)	742, 903, 1889, 2760
Cac8I	GCNNGC	3 cut(s)	652, 2466, 2766
CciI	TCATGA	3 cut(s)	388, 811, 2013
Cfr10I	RCCGGY	2 cut(s)	593, 2594
Cfr13I	GGNCC	1 cut(s)	329
Cfr42I	CCGCGG	1 cut(s)	1280
Cfr9I	CCCGGG	1 cut(s)	1992
ClaI	ATCGAT	1 cut(s)	2404
CsiI	ACCWGGT	1 cut(s)	2788
Csp6I	GTAC	5 cut(s)	1254, 1723, 1880, 2024, 2138
CspAI	ACCGGT	2 cut(s)	593, 2594
CspCI	CAANNNNNGTGG	2 cut(s)	1435, 1470
CviQI	GTAC	5 cut(s)	1254, 1723, 1880, 2024, 2138
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	4 cut(s)	425, 663, 951, 1697
EarI	CTCTTC	4 cut(s)	425, 663, 951, 1697
Ecl136II	GAGCTC	1 cut(s)	435
Eco130I	CCWWGG	3 cut(s)	1080, 1647, 1838
Eco24I	GRGCYC	1 cut(s)	437
Eco32I	GATATC	3 cut(s)	2031, 2342, 2883
Eco47I	GGWCC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	1086, 2736
Eco72I	CACGTG	1 cut(s)	2857
Eco88I	CYCGRG	1 cut(s)	1992
EcoICRI	GAGCTC	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	1482
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	7 cut(s)	487, 1450, 1477, 1529, 2159, 2206, 2788
EcoRV	GATATC	3 cut(s)	2031, 2342, 2883
EcoT14I	CCWWGG	3 cut(s)	1080, 1647, 1838
EcoT22I	ATGCAT	2 cut(s)	1048, 2328
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	3 cut(s)	1080, 1647, 1838
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	1786
FauI	CCCGC	2 cut(s)	1121, 1272
FbaI	TGATCA	4 cut(s)	274, 460, 739, 1141
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	5 cut(s)	321, 579, 1277, 2377, 2829
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	5 cut(s)	321, 579, 1277, 2377, 2829
FspBI	CTAG	6 cut(s)	8, 164, 599, 1119, 1545, 1806
GluI	GCNGC	5 cut(s)	321, 579, 1277, 2377, 2829
GsaI	CCCAGC	1 cut(s)	834
HaeIII	GGCC	2 cut(s)	686, 2238
HapII	CCGG	6 cut(s)	104, 594, 1600, 1993, 2595, 2651
HincII	GTYRAC	1 cut(s)	2592
HindII	GTYRAC	1 cut(s)	2592
HinfI	GANTC	8 cut(s)	1320, 2066, 2406, 2477, 2566, 2758, 2834, 2960
HpaI	GTTAAC	1 cut(s)	2592
HpaII	CCGG	6 cut(s)	104, 594, 1600, 1993, 2595, 2651
HphI	GGTGA	7 cut(s)	53, 878, 2198, 2609, 2640, 2829, 2978
Hpy166II	GTNNAC	7 cut(s)	568, 1256, 1329, 2223, 2592, 2904, 2918
Hpy8I	GTNNAC	7 cut(s)	568, 1256, 1329, 2223, 2592, 2904, 2918
Hpy99I	CGWCG	1 cut(s)	359
HpyCH4III	ACNGT	6 cut(s)	805, 1671, 1731, 2049, 2383, 2947
HpyCH4IV	ACGT	6 cut(s)	280, 525, 570, 1677, 2776, 2856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 1276
HpySE526I	ACGT	6 cut(s)	280, 525, 570, 1677, 2776, 2856
Kpn2I	TCCGGA	2 cut(s)	103, 1599
KpnI	GGTACC	1 cut(s)	1726
Ksp22I	TGATCA	4 cut(s)	274, 460, 739, 1141
KspAI	GTTAAC	1 cut(s)	2592
KspI	CCGCGG	1 cut(s)	1280
LguI	GCTCTTC	2 cut(s)	425, 1697
LmnI	GCTCC	7 cut(s)	217, 250, 406, 787, 2175, 2310, 2711
Lsp1109I	GCAGC	4 cut(s)	332, 590, 2363, 2815
LweI	GCATC	6 cut(s)	85, 1033, 1273, 1716, 2335, 2644
MabI	ACCWGGT	1 cut(s)	2788
MaeI	CTAG	6 cut(s)	8, 164, 599, 1119, 1545, 1806
MaeII	ACGT	6 cut(s)	280, 525, 570, 1677, 2776, 2856
MaeIII	GTNAC	6 cut(s)	589, 614, 1520, 1829, 2186, 2755
MbiI	CCGCTC	1 cut(s)	945
MflI	RGATCY	4 cut(s)	1033, 1954, 2143, 2950
MhlI	GDGCHC	4 cut(s)	437, 539, 2172, 2862
MlyI	GAGTC	5 cut(s)	1329, 2575, 2752, 2828, 2954
MmeI	TCCRAC	4 cut(s)	378, 456, 778, 2543
Mph1103I	ATGCAT	2 cut(s)	1048, 2328
MroI	TCCGGA	2 cut(s)	103, 1599
MroXI	GAANNNNTTC	1 cut(s)	1595
MslI	CAYNNNNRTG	4 cut(s)	290, 621, 816, 1265
MspA1I	CMGCKG	2 cut(s)	1106, 1279
MspI	CCGG	6 cut(s)	104, 594, 1600, 1993, 2595, 2651
MspR9I	CCNGG	9 cut(s)	489, 1452, 1479, 1531, 1993, 1994, 2161, 2208, 2790
Mva1269I	GAATGC	3 cut(s)	1130, 1461, 2304
MvaI	CCWGG	7 cut(s)	489, 1452, 1479, 1531, 2161, 2208, 2790
MvnI	CGCG	2 cut(s)	1279, 2719
MwoI	GCNNNNNNNGC	2 cut(s)	173, 1276
NciI	CCSGG	2 cut(s)	1993, 1994
NlaIV	GGNNCC	7 cut(s)	96, 219, 252, 408, 1724, 2312, 2674
NmeAIII	GCCGAG	3 cut(s)	1808, 2214, 2740
NmuCI	GTSAC	5 cut(s)	589, 614, 1829, 2186, 2755
NsiI	ATGCAT	2 cut(s)	1048, 2328
NspI	RCATGY	1 cut(s)	2813
OliI	CACNNNNGTG	1 cut(s)	1265
PagI	TCATGA	3 cut(s)	388, 811, 2013
PciSI	GCTCTTC	2 cut(s)	425, 1697
PcsI	WCGNNNNNNNCGW	1 cut(s)	2782
PctI	GAATGC	3 cut(s)	1130, 1461, 2304
PdmI	GAANNNNTTC	1 cut(s)	1595
PfeI	GAWTC	3 cut(s)	2066, 2406, 2477
PflFI	GACNNNGTC	1 cut(s)	2790
PinAI	ACCGGT	2 cut(s)	593, 2594
PkrI	GCNGC	5 cut(s)	322, 580, 1278, 2378, 2830
PleI	GAGTC	5 cut(s)	1328, 2574, 2752, 2828, 2954
PmaCI	CACGTG	1 cut(s)	2857
PmlI	CACGTG	1 cut(s)	2857
PpsI	GAGTC	5 cut(s)	1328, 2574, 2752, 2828, 2954
Ppu21I	YACGTR	1 cut(s)	2857
PsiI	TTATAA	2 cut(s)	1505, 2181
Psp124BI	GAGCTC	1 cut(s)	437
Psp6I	CCWGG	7 cut(s)	487, 1450, 1477, 1529, 2159, 2206, 2788
PspCI	CACGTG	1 cut(s)	2857
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	7 cut(s)	487, 1450, 1477, 1529, 2159, 2206, 2788
PspN4I	GGNNCC	7 cut(s)	96, 219, 252, 408, 1724, 2312, 2674
PspPI	GGNCC	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	1715, 1747
PstI	CTGCAG	1 cut(s)	1797
PsuI	RGATCY	4 cut(s)	1033, 1954, 2143, 2950
PsyI	GACNNNGTC	1 cut(s)	2790
PvuII	CAGCTG	1 cut(s)	1106
RsaI	GTAC	5 cut(s)	1255, 1724, 1881, 2025, 2139
RsaNI	GTAC	5 cut(s)	1254, 1723, 1880, 2024, 2138
RseI	CAYNNNNRTG	4 cut(s)	290, 621, 816, 1265
SacI	GAGCTC	1 cut(s)	437
SacII	CCGCGG	1 cut(s)	1280
SapI	GCTCTTC	2 cut(s)	425, 1697
SatI	GCNGC	5 cut(s)	321, 579, 1277, 2377, 2829
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	5 cut(s)	1329, 2575, 2752, 2828, 2954
ScrFI	CCNGG	9 cut(s)	489, 1452, 1479, 1531, 1993, 1994, 2161, 2208, 2790
SduI	GDGCHC	4 cut(s)	437, 539, 2172, 2862
SexAI	ACCWGGT	1 cut(s)	2788
SfaNI	GCATC	6 cut(s)	85, 1033, 1273, 1716, 2335, 2644
SfcI	CTRYAG	6 cut(s)	264, 804, 1426, 1793, 2815, 2946
Sfr303I	CCGCGG	1 cut(s)	1280
SgrBI	CCGCGG	1 cut(s)	1280
SinI	GGWCC	1 cut(s)	329
SmaI	CCCGGG	1 cut(s)	1994
SmiMI	CAYNNNNRTG	4 cut(s)	290, 621, 816, 1265
SmlI	CTYRAG	1 cut(s)	2099
SmoI	CTYRAG	1 cut(s)	2099
SsiI	CCGC	6 cut(s)	945, 1128, 1277, 1279, 1660, 2008
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	6 cut(s)	8, 164, 599, 1119, 1545, 1806
SstI	GAGCTC	1 cut(s)	437
StyD4I	CCNGG	9 cut(s)	487, 1450, 1477, 1529, 1991, 1992, 2159, 2206, 2788
StyI	CCWWGG	3 cut(s)	1080, 1647, 1838
TaaI	ACNGT	6 cut(s)	805, 1671, 1731, 2049, 2383, 2947
TaiI	ACGT	6 cut(s)	283, 528, 573, 1680, 2779, 2859
TaqI	TCGA	6 cut(s)	882, 1095, 2149, 2404, 2785, 2898
TatI	WGTACW	3 cut(s)	1253, 1879, 2137
TauI	GCSGC	1 cut(s)	1279
TfiI	GAWTC	3 cut(s)	2066, 2406, 2477
TscAI	CASTG	4 cut(s)	742, 910, 1896, 2760
TseFI	GTSAC	5 cut(s)	589, 614, 1829, 2186, 2755
TseI	GCWGC	4 cut(s)	320, 578, 2376, 2828
Tsp45I	GTSAC	5 cut(s)	589, 614, 1829, 2186, 2755
TspGWI	ACGGA	3 cut(s)	554, 1787, 2041
TspMI	CCCGGG	1 cut(s)	1992
TspRI	CASTG	4 cut(s)	742, 910, 1896, 2760
Tth111I	GACNNNGTC	1 cut(s)	2790
VpaK11BI	GGWCC	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	1482
XapI	RAATTY	7 cut(s)	694, 731, 1358, 1788, 2261, 2422, 2447
XbaI	TCTAGA	1 cut(s)	598
XceI	RCATGY	1 cut(s)	2813
XmaI	CCCGGG	1 cut(s)	1992
XmiI	GTMKAC	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	1595
XspI	CTAG	6 cut(s)	8, 164, 599, 1119, 1545, 1806
Zsp2I	ATGCAT	2 cut(s)	1048, 2328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.