Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001815

Physical Location & Seq

Genomic Coordinates Reverse (-)

6105452 .. 6110139

Gene Structure 4688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05130.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3198 bp

ATGGATCATCATCAAATTTTCATTGATATAGAGGATGACATTCCAAAAAACAGTACAGTAGTAGCACTGCCTGTTATTGCCCTTAGTTCGGATGACGAAGACGAGGGAAATAGGAAAAAGCCACTTCATTTGTATCAGAAGGATGTGCTGGAGCTGGAGCCTCCTCCCCGCGGTCATCAACAGGTCATGGATATGGATGATGAAAATCGTAACAATGCTACAGAAACAGCGCCGCCTGTTGTTGTTCTGGGTTCTGATGATGAAGATGATGGAAGTAAGAGGCTAGTTCAACATCAGAAGTTTGTACTGGAGCCTGTTGGAAGATTTCTGAAGAAGAACTTGCCAGAGTCTGTAACGGGCAAAGATCAGAATAATGAGTTCGAAACTCTGCTTGGAGAATTCGACATGATAGATAAAGATGTAGATGTTGGTGCAGCAGACGATAGGGATTGTTTAGAGAGCACAGACCAGAGTGAAGAGTTGGAAACTCAACTTGGAAAGAACTGTCTTGGGATGGATAAAGATGCAAATGTTGGTACAGCAAACAATGCGGATTGTTTAGAGAGAGAAGAGTTGAAAACTCCACCTGGAAAAGTTGATATTTGGACAGATAAAGATGTATATATTGGTTTAGAAGACAATATGGATTGTTCAGAGAGTAAAGATGAGAGAGAAAAGGTGAAAACTCCACCTGGAAAAGTGGATATTTGGATAGATAAAGATGTATACATTGGGTCAGAAGACAATATGGATTGTGAAGAGAGCATAGGTCAGACAGAAGATTTGGGAGCACTGCCTGGACAAATTGAGATTGGAATAACCGAAGATGTAGTAGAAAATATGAAGTATGTGGCGAGCACTCAGACAGAAAAGTTGGAAACTCTGCCTGGCGAAATTGATACTGGGATAGACAAAGATATAAATGCTGGTGTAGCATTCCATATGGTGATTGGAAACGGGAACCAAAGAGCATGTGAGAAAGAGGAGTGGAATGGTCAAATTAATTACAGAGAGACTAGGGAAAATATGGAGTGGATAGCTACAAGAACAGAGGTAGGAGTTCTGGCTGATAACATGGATGCTGGGACAGACAAATGTGAGCATGTTAATGAAGAACATGATTGTGATAAGGTGGTTGGGGAAGATAATCACAACACTTTCCAGTTTAAAGAACAATATCTGAAAAACGATATAGAGGAAGATGATCTAGCAGACATATGGAAGGAAATGACAATGGCAATAGAATGTTCCAAGGATTTTGCTGTTGATCCTTCAGCTGATGAAACATCAGGTGAATGTGGGGAAGAATGTGATCACATTTGCATCCTGAAGGATGATCTTGGGTTAGTTTGCCGTATCTGTGGAGTTGTCCAACAAGGAATTGAAACCATGTTTGAGTTCCAATATAGCAAGGCCAAAAGGACTAGACGAAGTTACATGTGTGAGTCGCAGAATGCTAACTATACCGAGTCAGCTCAGAATTTCTCAGTTGGAATTAAATCTACTAGGGACAATTTAACGGCAACGGAAATCTCTGCTCATCCAAGGCACCGAAATAAAATGAAACCACATCAAGTGGAGGGCTTTAACTTTCTCGCTAGCAACTTGCTGGCCGATAATCCAGGGGGTTGCATTTTGGCTCATGCCCCTGGTTCTGGAAAGACGTTGTTGATTATAAGTTTTGTTCAGAGTTTCCTGGTTAGATTTCCCCATGCTAGACCATTGATTGTCCTACCTAAAGGCATTTTGTCTACATGGAAGCAAGAGTTCCAGAAATGGCAAGTGGAGGACATTCCGTTGCATGATCTATACACTTCAAAAGCAGAGAACCGGTCTCAGCAGCTGGTTATTTTAAAGAAGTGGGTAGAGCTGAAGAGCATCCTTTTTCTTGGGTATCAACAGTTCTCCACCATAATGTGTGACAATGGGACCAGTAAAGCATCAGTTGATTGTCGAGAAATGCTGTTGAAGGTCCCTAGCATTCTGATTTTAGATGAAGGCCACACTCCAAGGAATGACGATACCAATTTGCTGCAGTCCCTTGCAAGAGTCCAAACACCTCTAAAAGTAGTCCTCTCAGGAACCCTTTATCAGAATCATGTGAAAGAAGTTTTCAATATTTTAAATCTTGTTCGTCCGAAGTTTCTGAAATTGGATACTTCCCGGGATGTGGCTAAGCGTATCATGAGCAGAGTACAAATATCAGGTGCGAGGAAACAATTAAAAACTGGTACAAATTCAGCTCTATTTGACTTGATAGAATACACTCTCCAGAAAGATGAAGACTATAAAAGGAAAGAGGCTGTCATACAAGATCTTCGAGAGATGACCAGGAAGGTCCTGCATTACTACAAAGGAGATTCTCTGGATGAACTCCCCGGTCTTGTTGATTTCACCATACTACTCAACCTTAGTTCAAGACAGGAGCTTGAAGTGAAAAAAATGAAGAAACTGGATTACTTCAAGAAAGCTTCTGTGGGTAGCCTTGTTTATATGCATCCAGAGTTGAAATCTCTTACAGAGAAATATTCATTGACTGGCGAAAAAGGCTGTGAAATTGGTAATGACAAGATGGATACAATTGTAGAAAAAATAAATGTGAAAGATGGAGTTAAAGCTAATTTCTTTCTTAGTTTACTACGCCTGTGTGAATCAACTCGTGAGAAGCTGCTGGTGTTCAGCCAGTATATCCTGCCGCTGAAATTTATGGAGAGATTAGCAGTGAAGCTAAAGGGGTGGAGTCTAAACAAGGAAATTTTTGTGGTTACCGGCGATTCAAATTCAACACATAGGGAACAGTCTGTAGGAAGCTTTAACAATTCAGCCGATGCGAAAGTCTTCTTTGGCTCTATTAGAGCCTGTGGAGAAGGAATCTCTCTAGTGGGGGCTTCTCGCATCCTAATTGTTGATGTTCCATTGAACCCTTCAGTAACTCGCCAGGCAATAGGCCGGACATTTCGACCAGGACAAATGAAGAAAGTATACGTCTATAGATTGGTTGCTGCTGATTCGCCTGAAGAGGAAGGTCACTTAATCTGCTGCAGGAAGGAATTGATTTCGAAGAGGTGGTTTGAGTGGAACGAGAGCTGTGGACATCAAGACTTTGATTTGAAGACCGTTGACGTGCATGAATGTGGTGATATGTTCTTGGAAAGTCGATTGTTGCAGGAAGATGTAAAGGTTCTACAGAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1066

Amino Acids

120.53

Weight (kDa)

4.99

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16390 AT2G16390 AT2G21450 AT2G21450 AT2G21450 AT2G21455
fragaria_vesca	FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760 FvH4_2g09760
malus_domestica	MD05G1059900.v1.1 MD10G1068100.v1.1
prunus_persica	Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G089900_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1 Prupe.8G090000_v2.0.a1
pyrus_communis	pycom05g05130 pycom10g05390
rosa_chinensis	RchiOBHm_Chr6g0266061 RchiOBHm_Chr6g0266081
rosa_laevigata	RLG00000014118 RLG00000014121
rosa_multiflora	Rmu_sc0000776.1_g000029 Rmu_sc0000776.1_g000037
rosa_roxburghii	Rroxscaffold_174G00435180 Rroxscaffold_174G00435190 Rroxscaffold_7G00201990 Rroxscaffold_7G00202000
rosa_rugosa	Rorug06G0023000 Rorug06G0023700
rosa_samantha	Rh6AG144300 Rh6AG144400 Rh6BG144700 Rh6BG144900 Rh6CG141400 Rh6CG141600 Rh6DG129100 Rh6DG129200
rosa_wichuraiana	Rw1G008890 Rw6G012470 Rw6G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1676
AccB1I	GGYRCC	1 cut(s)	1548
AccI	GTMKAC	3 cut(s)	726, 1751, 2982
AccII	CGCG	1 cut(s)	171
AciI	CCGC	5 cut(s)	169, 171, 233, 551, 2696
AclWI	GGATC	2 cut(s)	12, 1262
AcoI	YGGCCR	1 cut(s)	1611
AcsI	RAATTY	7 cut(s)	15, 398, 1480, 2236, 2702, 2754, 2779
AcuI	CTGAAG	6 cut(s)	350, 1257, 1349, 1892, 2910, 3036
AfaI	GTAC	5 cut(s)	55, 306, 538, 2196, 2233
AfiI	CCNNNNNNNGG	4 cut(s)	88, 170, 1655, 2170
AflIII	ACRYGT	1 cut(s)	1437
AgeI	ACCGGT	1 cut(s)	1830
AjiI	CACGTC	1 cut(s)	3124
AjuI	GAANNNNNNNTTGG	4 cut(s)	375, 407, 477, 509
Alw21I	GWGCWC	3 cut(s)	464, 793, 860
Alw26I	GTCTC	2 cut(s)	1007, 1839
AlwI	GGATC	2 cut(s)	12, 1262
AlwNI	CAGNNNCTG	2 cut(s)	350, 1843
Ama87I	CYCGRG	1 cut(s)	2163
AoxI	GGCC	4 cut(s)	1413, 1611, 1999, 2947
ApeKI	GCWGC	6 cut(s)	434, 1840, 2032, 2668, 3002, 3039
ApoI	RAATTY	7 cut(s)	15, 398, 1480, 2236, 2702, 2754, 2779
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
AseI	ATTAAT	1 cut(s)	1002
AsiGI	ACCGGT	1 cut(s)	1830
Asp700I	GAANNNNTTC	1 cut(s)	2837
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	3 cut(s)	1929, 1972, 2338
AsuC2I	CCSGG	3 cut(s)	2164, 2165, 2379
AsuHPI	GGTGA	5 cut(s)	691, 958, 1304, 2386, 3149
AsuII	TTCGAA	2 cut(s)	381, 3059
AsuNHI	GCTAGC	1 cut(s)	1598
AvaI	CYCGRG	1 cut(s)	2163
AvaII	GGWCC	3 cut(s)	1929, 1972, 2338
BaeI	ACNNNNGTAYC	2 cut(s)	2568, 2601
BanI	GGYRCC	1 cut(s)	1548
BarI	GAAGNNNNNNTAC	2 cut(s)	2966, 2998
BauI	CACGAG	1 cut(s)	2658
BbsI	GAAGAC	6 cut(s)	105, 642, 747, 2289, 2830, 3119
Bbv12I	GWGCWC	3 cut(s)	464, 793, 860
BbvI	GCAGC	6 cut(s)	446, 1852, 2019, 2655, 2989, 3026
BccI	CCATC	4 cut(s)	263, 508, 2566, 2600
BceAI	ACGGC	2 cut(s)	1338, 1536
BciVI	GTATCC	2 cut(s)	2149, 2569
BclI	TGATCA	1 cut(s)	1312
BcnI	CCSGG	3 cut(s)	2164, 2165, 2379
BcoDI	GTCTC	2 cut(s)	1007, 1839
BfaI	CTAG	9 cut(s)	284, 1017, 1208, 1425, 1506, 1599, 1716, 1977, 2879
BfmI	CTRYAG	6 cut(s)	219, 2033, 2802, 2989, 3040, 3185
BfoI	RGCGCY	1 cut(s)	233
BfuI	GTATCC	2 cut(s)	2149, 2569
BglII	AGATCT	1 cut(s)	2314
BisI	GCNGC	8 cut(s)	233, 435, 1841, 2033, 2669, 2696, 3003, 3040
BlpI	GCTNAGC	1 cut(s)	2175
BlsI	GCNGC	8 cut(s)	234, 436, 1842, 2034, 2670, 2697, 3004, 3041
Bme18I	GGWCC	3 cut(s)	1929, 1972, 2338
BmeT110I	CYCGRG	1 cut(s)	2163
BmgBI	CACGTC	1 cut(s)	3124
BmgT120I	GGNCC	3 cut(s)	1929, 1972, 2338
BmiI	GGNNCC	7 cut(s)	159, 312, 962, 1550, 1930, 1974, 2083
BmrI	ACTGGG	1 cut(s)	912
BmsI	GCATC	8 cut(s)	514, 1069, 1332, 1887, 1949, 2506, 2818, 2904
BmtI	GCTAGC	1 cut(s)	1602
BmuI	ACTGGG	1 cut(s)	912
BpiI	GAAGAC	6 cut(s)	105, 642, 747, 2289, 2830, 3119
BpmI	CTGGAG	4 cut(s)	170, 176, 329, 2255
Bpu1102I	GCTNAGC	1 cut(s)	2175
Bpu14I	TTCGAA	2 cut(s)	381, 3059
BpuMI	CCSGG	3 cut(s)	2164, 2165, 2379
BsaBI	GATNNNNATC	2 cut(s)	9, 204
BsaI	GGTCTC	1 cut(s)	1839
BsaJI	CCNNGG	8 cut(s)	169, 1251, 1544, 1622, 1648, 2009, 2163, 2377
BsaWI	WCCGGW	1 cut(s)	1830
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 170, 1655, 2170
Bse118I	RCCGGY	2 cut(s)	1830, 2768
Bse1I	ACTGG	8 cut(s)	312, 907, 1162, 1932, 2233, 2457, 2542, 2683
Bse8I	GATNNNNATC	2 cut(s)	9, 204
BseDI	CCNNGG	8 cut(s)	169, 1251, 1544, 1622, 1648, 2009, 2163, 2377
BseJI	GATNNNNATC	2 cut(s)	9, 204
BseLI	CCNNNNNNNGG	4 cut(s)	88, 170, 1655, 2170
BseMII	CTCAG	5 cut(s)	875, 1490, 1500, 1850, 2091
BseNI	ACTGG	8 cut(s)	312, 907, 1162, 1932, 2233, 2457, 2542, 2683
BseRI	GAGGAG	2 cut(s)	153, 998
BseXI	GCAGC	6 cut(s)	446, 1852, 2019, 2655, 2989, 3026
BseYI	CCCAGC	1 cut(s)	1082
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	4 cut(s)	1415, 1613, 2001, 2949
BshNI	GGYRCC	1 cut(s)	1548
BshTI	ACCGGT	1 cut(s)	1830
BsiHKAI	GWGCWC	3 cut(s)	464, 793, 860
BsiHKCI	CYCGRG	1 cut(s)	2163
BsiSI	CCGG	5 cut(s)	1831, 2164, 2379, 2769, 2950
BslFI	GGGAC	5 cut(s)	1099, 1523, 1942, 1958, 2023
BslI	CCNNNNNNNGG	4 cut(s)	88, 170, 1655, 2170
BsmAI	GTCTC	2 cut(s)	1007, 1839
BsmFI	GGGAC	5 cut(s)	1099, 1523, 1942, 1958, 2023
BsmI	GAATGC	3 cut(s)	935, 1459, 1980
BsnI	GGCC	4 cut(s)	1415, 1613, 2001, 2949
Bso31I	GGTCTC	1 cut(s)	1839
BsoBI	CYCGRG	1 cut(s)	2163
Bsp119I	TTCGAA	2 cut(s)	381, 3059
Bsp1286I	GDGCHC	3 cut(s)	464, 793, 860
Bsp143I	GATC	8 cut(s)	4, 364, 1204, 1267, 1312, 1336, 1804, 2314
Bsp1720I	GCTNAGC	1 cut(s)	2175
BspACI	CCGC	5 cut(s)	169, 171, 233, 551, 2696
BspANI	GGCC	4 cut(s)	1415, 1613, 2001, 2949
BspCNI	CTCAG	5 cut(s)	874, 1489, 1499, 1849, 2090
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	2184
BspLI	GGNNCC	7 cut(s)	159, 312, 962, 1550, 1930, 1974, 2083
BspMAI	CTGCAG	2 cut(s)	2037, 3044
BspOI	GCTAGC	1 cut(s)	1602
BspPI	GGATC	2 cut(s)	12, 1262
BspQI	GCTCTTC	1 cut(s)	1868
BspT104I	TTCGAA	2 cut(s)	381, 3059
BspT107I	GGYRCC	1 cut(s)	1548
BspTNI	GGTCTC	1 cut(s)	1839
BsrFI	RCCGGY	2 cut(s)	1830, 2768
BsrI	ACTGG	8 cut(s)	312, 907, 1162, 1932, 2233, 2457, 2542, 2683
BssAI	RCCGGY	2 cut(s)	1830, 2768
BssECI	CCNNGG	8 cut(s)	169, 1251, 1544, 1622, 1648, 2009, 2163, 2377
BssMI	GATC	8 cut(s)	4, 364, 1204, 1267, 1312, 1336, 1804, 2314
BssNAI	GTATAC	2 cut(s)	727, 2983
BssSI	CACGAG	1 cut(s)	2658
BssT1I	CCWWGG	3 cut(s)	1251, 1544, 2009
Bst1107I	GTATAC	2 cut(s)	727, 2983
Bst2BI	CACGAG	1 cut(s)	2658
Bst4CI	ACNGT	6 cut(s)	53, 58, 506, 1902, 2799, 3118
Bst6I	CTCTTC	6 cut(s)	471, 564, 753, 1868, 3012, 3056
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstBI	TTCGAA	2 cut(s)	381, 3059
BstC8I	GCNNGC	3 cut(s)	856, 1600, 1611
BstDEI	CTNAG	9 cut(s)	83, 861, 1476, 1486, 1836, 2077, 2175, 2411, 2630
BstDSI	CCRYGG	1 cut(s)	169
BstEII	GGTNACC	1 cut(s)	2764
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	8 cut(s)	7, 367, 1207, 1270, 1315, 1339, 1807, 2317
BstMAI	GTCTC	2 cut(s)	1007, 1839
BstMBI	GATC	8 cut(s)	4, 364, 1204, 1267, 1312, 1336, 1804, 2314
BstMWI	GCNNNNNNNGC	3 cut(s)	548, 932, 2547
BstNSI	RCATGY	3 cut(s)	975, 1106, 1441
BstPI	GGTNACC	1 cut(s)	2764
BstSFI	CTRYAG	6 cut(s)	219, 2033, 2802, 2989, 3040, 3185
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	6 cut(s)	446, 1852, 2019, 2655, 2989, 3026
BstV2I	GAAGAC	6 cut(s)	105, 642, 747, 2289, 2830, 3119
BstX2I	RGATCY	1 cut(s)	2314
BstYI	RGATCY	1 cut(s)	2314
BstZ17I	GTATAC	2 cut(s)	727, 2983
BsuI	GTATCC	2 cut(s)	2149, 2569
BsuRI	GGCC	4 cut(s)	1415, 1613, 2001, 2949
BtgI	CCRYGG	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	3124
BtsI	GCAGTG	3 cut(s)	65, 791, 2727
BtsIMutI	CAGTG	3 cut(s)	65, 791, 2727
Cac8I	GCNNGC	3 cut(s)	856, 1600, 1611
CaiI	CAGNNNCTG	2 cut(s)	350, 1843
CciI	TCATGA	1 cut(s)	2184
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	2 cut(s)	1830, 2768
Cfr13I	GGNCC	3 cut(s)	1929, 1972, 2338
Cfr42I	CCGCGG	1 cut(s)	172
Cfr9I	CCCGGG	1 cut(s)	2163
Csp6I	GTAC	5 cut(s)	54, 305, 537, 2195, 2232
CspAI	ACCGGT	1 cut(s)	1830
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviQI	GTAC	5 cut(s)	54, 305, 537, 2195, 2232
DdeI	CTNAG	9 cut(s)	83, 861, 1476, 1486, 1836, 2077, 2175, 2411, 2630
DpnI	GATC	8 cut(s)	6, 366, 1206, 1269, 1314, 1338, 1806, 2316
DpnII	GATC	8 cut(s)	4, 364, 1204, 1267, 1312, 1336, 1804, 2314
DraI	TTTAAA	3 cut(s)	1168, 1854, 2124
EaeI	YGGCCR	1 cut(s)	1611
Eam1104I	CTCTTC	6 cut(s)	471, 564, 753, 1868, 3012, 3056
EarI	CTCTTC	6 cut(s)	471, 564, 753, 1868, 3012, 3056
Eco130I	CCWWGG	3 cut(s)	1251, 1544, 2009
Eco31I	GGTCTC	1 cut(s)	1839
Eco47I	GGWCC	3 cut(s)	1929, 1972, 2338
Eco57I	CTGAAG	6 cut(s)	350, 1257, 1349, 1892, 2910, 3036
Eco88I	CYCGRG	1 cut(s)	2163
Eco91I	GGTNACC	1 cut(s)	2764
EcoO109I	RGGNCCY	2 cut(s)	1972, 2338
EcoO65I	GGTNACC	1 cut(s)	2764
EcoRI	GAATTC	1 cut(s)	398
EcoT14I	CCWWGG	3 cut(s)	1251, 1544, 2009
EcoT22I	ATGCAT	1 cut(s)	2499
ErhI	CCWWGG	3 cut(s)	1251, 1544, 2009
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	5 cut(s)	1099, 1523, 1942, 1958, 2023
FauI	CCCGC	1 cut(s)	176
FauNDI	CATATG	2 cut(s)	942, 1217
FbaI	TGATCA	1 cut(s)	1312
FblI	GTMKAC	3 cut(s)	726, 1751, 2982
Fnu4HI	GCNGC	8 cut(s)	233, 435, 1841, 2033, 2669, 2696, 3003, 3040
Fsp4HI	GCNGC	8 cut(s)	233, 435, 1841, 2033, 2669, 2696, 3003, 3040
FspBI	CTAG	9 cut(s)	284, 1017, 1208, 1425, 1506, 1599, 1716, 1977, 2879
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	8 cut(s)	233, 435, 1841, 2033, 2669, 2696, 3003, 3040
GsaI	CCCAGC	1 cut(s)	1086
GsuI	CTGGAG	4 cut(s)	170, 176, 329, 2255
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	4 cut(s)	1415, 1613, 2001, 2949
HapII	CCGG	5 cut(s)	1831, 2164, 2379, 2769, 2950
HhaI	GCGC	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	3121
HindII	GTYRAC	1 cut(s)	3121
HindIII	AAGCTT	2 cut(s)	2469, 2809
HpaII	CCGG	5 cut(s)	1831, 2164, 2379, 2769, 2950
HphI	GGTGA	5 cut(s)	691, 958, 1304, 2386, 3149
Hpy166II	GTNNAC	6 cut(s)	727, 1752, 2636, 2983, 3092, 3121
Hpy8I	GTNNAC	6 cut(s)	727, 1752, 2636, 2983, 3092, 3121
HpyCH4III	ACNGT	6 cut(s)	53, 58, 506, 1902, 2799, 3118
HpyCH4IV	ACGT	3 cut(s)	1664, 2985, 3123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	548, 932, 2547
HpyF3I	CTNAG	9 cut(s)	83, 861, 1476, 1486, 1836, 2077, 2175, 2411, 2630
HpySE526I	ACGT	3 cut(s)	1664, 2985, 3123
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	1312
KspI	CCGCGG	1 cut(s)	172
Kzo9I	GATC	8 cut(s)	4, 364, 1204, 1267, 1312, 1336, 1804, 2314
LguI	GCTCTTC	1 cut(s)	1868
LmnI	GCTCC	5 cut(s)	151, 157, 310, 788, 2425
Lsp1109I	GCAGC	6 cut(s)	446, 1852, 2019, 2655, 2989, 3026
LweI	GCATC	8 cut(s)	514, 1069, 1332, 1887, 1949, 2506, 2818, 2904
MaeI	CTAG	9 cut(s)	284, 1017, 1208, 1425, 1506, 1599, 1716, 1977, 2879
MaeII	ACGT	3 cut(s)	1664, 2985, 3123
MaeIII	GTNAC	7 cut(s)	209, 352, 1433, 1919, 2764, 2929, 3026
MalI	GATC	8 cut(s)	6, 366, 1206, 1269, 1314, 1338, 1806, 2316
MboI	GATC	8 cut(s)	4, 364, 1204, 1267, 1312, 1336, 1804, 2314
MfeI	CAATTG	1 cut(s)	2580
MflI	RGATCY	1 cut(s)	2314
MhlI	GDGCHC	3 cut(s)	464, 793, 860
MlyI	GAGTC	5 cut(s)	356, 1454, 1478, 2058, 2749
MmeI	TCCRAC	5 cut(s)	298, 462, 855, 1396, 1471
Mph1103I	ATGCAT	1 cut(s)	2499
MroXI	GAANNNNTTC	1 cut(s)	2837
MslI	CAYNNNNRTG	5 cut(s)	191, 1107, 1122, 1913, 3132
MspA1I	CMGCKG	4 cut(s)	171, 1277, 1843, 2698
MspI	CCGG	5 cut(s)	1831, 2164, 2379, 2769, 2950
MunI	CAATTG	1 cut(s)	2580
Mva1269I	GAATGC	3 cut(s)	935, 1459, 1980
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	548, 932, 2547
NciI	CCSGG	3 cut(s)	2164, 2165, 2379
NdeI	CATATG	2 cut(s)	942, 1217
NdeII	GATC	8 cut(s)	4, 364, 1204, 1267, 1312, 1336, 1804, 2314
NheI	GCTAGC	1 cut(s)	1598
NlaIV	GGNNCC	7 cut(s)	159, 312, 962, 1550, 1930, 1974, 2083
NmuCI	GTSAC	2 cut(s)	1919, 3026
NsiI	ATGCAT	1 cut(s)	2499
NspI	RCATGY	3 cut(s)	975, 1106, 1441
NspV	TTCGAA	2 cut(s)	381, 3059
PagI	TCATGA	1 cut(s)	2184
PciI	ACATGT	1 cut(s)	1437
PciSI	GCTCTTC	1 cut(s)	1868
PctI	GAATGC	3 cut(s)	935, 1459, 1980
PdmI	GAANNNNTTC	1 cut(s)	2837
PfeI	GAWTC	6 cut(s)	2095, 2360, 2651, 2774, 2871, 3008
PinAI	ACCGGT	1 cut(s)	1830
PkrI	GCNGC	8 cut(s)	234, 436, 1842, 2034, 2670, 2697, 3004, 3041
PleI	GAGTC	5 cut(s)	355, 1453, 1477, 2057, 2748
PpsI	GAGTC	5 cut(s)	355, 1453, 1477, 2057, 2748
PpuMI	RGGWCCY	2 cut(s)	1972, 2338
PscI	ACATGT	1 cut(s)	1437
PshBI	ATTAAT	1 cut(s)	1002
PsiI	TTATAA	1 cut(s)	1676
Psp5II	RGGWCCY	2 cut(s)	1972, 2338
PspEI	GGTNACC	1 cut(s)	2764
PspFI	CCCAGC	1 cut(s)	1082
PspN4I	GGNNCC	7 cut(s)	159, 312, 962, 1550, 1930, 1974, 2083
PspPI	GGNCC	3 cut(s)	1929, 1972, 2338
PspPPI	RGGWCCY	2 cut(s)	1972, 2338
PsrI	GAACNNNNNNTAC	2 cut(s)	1886, 1918
PstI	CTGCAG	2 cut(s)	2037, 3044
PstNI	CAGNNNCTG	2 cut(s)	350, 1843
PsuI	RGATCY	1 cut(s)	2314
PvuII	CAGCTG	2 cut(s)	1277, 1843
RsaI	GTAC	5 cut(s)	55, 306, 538, 2196, 2233
RsaNI	GTAC	5 cut(s)	54, 305, 537, 2195, 2232
RseI	CAYNNNNRTG	5 cut(s)	191, 1107, 1122, 1913, 3132
SacII	CCGCGG	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	1868
SatI	GCNGC	8 cut(s)	233, 435, 1841, 2033, 2669, 2696, 3003, 3040
Sau3AI	GATC	8 cut(s)	4, 364, 1204, 1267, 1312, 1336, 1804, 2314
Sau96I	GGNCC	3 cut(s)	1929, 1972, 2338
SchI	GAGTC	5 cut(s)	356, 1454, 1478, 2058, 2749
SduI	GDGCHC	3 cut(s)	464, 793, 860
SfaNI	GCATC	8 cut(s)	514, 1069, 1332, 1887, 1949, 2506, 2818, 2904
SfcI	CTRYAG	6 cut(s)	219, 2033, 2802, 2989, 3040, 3185
Sfr303I	CCGCGG	1 cut(s)	172
SfuI	TTCGAA	2 cut(s)	381, 3059
SgrBI	CCGCGG	1 cut(s)	172
SinI	GGWCC	3 cut(s)	1929, 1972, 2338
SmaI	CCCGGG	1 cut(s)	2165
SmiMI	CAYNNNNRTG	5 cut(s)	191, 1107, 1122, 1913, 3132
SsiI	CCGC	5 cut(s)	169, 171, 233, 551, 2696
SspI	AATATT	2 cut(s)	2119, 2528
SspMI	CTAG	9 cut(s)	284, 1017, 1208, 1425, 1506, 1599, 1716, 1977, 2879
StyI	CCWWGG	3 cut(s)	1251, 1544, 2009
TaaI	ACNGT	6 cut(s)	53, 58, 506, 1902, 2799, 3118
TaiI	ACGT	3 cut(s)	1667, 2988, 3126
TaqI	TCGA	7 cut(s)	381, 402, 1954, 2320, 2959, 3059, 3157
TatI	WGTACW	3 cut(s)	53, 304, 2194
TauI	GCSGC	2 cut(s)	235, 2698
TfiI	GAWTC	6 cut(s)	2095, 2360, 2651, 2774, 2871, 3008
TscAI	CASTG	3 cut(s)	72, 798, 2727
TseFI	GTSAC	2 cut(s)	1919, 3026
TseI	GCWGC	6 cut(s)	434, 1840, 2032, 2668, 3002, 3039
Tsp45I	GTSAC	2 cut(s)	1919, 3026
TspGWI	ACGGA	2 cut(s)	1541, 1785
TspMI	CCCGGG	1 cut(s)	2163
TspRI	CASTG	3 cut(s)	72, 798, 2727
VpaK11BI	GGWCC	3 cut(s)	1929, 1972, 2338
VspI	ATTAAT	1 cut(s)	1002
XapI	RAATTY	7 cut(s)	15, 398, 1480, 2236, 2702, 2754, 2779
XceI	RCATGY	3 cut(s)	975, 1106, 1441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	947
XmaI	CCCGGG	1 cut(s)	2163
XmiI	GTMKAC	3 cut(s)	726, 1751, 2982
XmnI	GAANNNNTTC	1 cut(s)	2837
XspI	CTAG	9 cut(s)	284, 1017, 1208, 1425, 1506, 1599, 1716, 1977, 2879
Zsp2I	ATGCAT	1 cut(s)	2499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.