Rorug06G0023000

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001815
Physical Location & Seq
Forward (+)
2873169 .. 2875727
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0023000.1

Sequence Viewer

Length: 1431 bp
ATGGCGGCAGTTCAAATCTTCAAAAGCTCTCGTCTTTTCCCTACTACAAAACCCAACCCCCTCCTCTGCCTCTCCCACTTCTCCTCCGCGCCGTCCGATCAAACCCCACCAGAACCCAACCCCCTAATCCCGTCCGTCGTCTCCATCCTAACCCACCTCCGATCCAAGTCCCGCTGGGGCTACCTCCGCACTCTCTACCCTTCCGGCTTCACCCCAACCGACTTTTCCCAAATCGCCCTCAACATCAAAAACAATCCCCACCTCGTCCTCCGCTTCTTCCAATGGACCCACAACCACAACAACAACCACAACCTCCTCTCCTTCTCCACCACCATCCACATCCTCGCCCGCTCTCGCCTCAAATCCCAAGCCTATTCCCTTATCCGCGACGCCATTCGGGTTTCGGAGCCTCTGCAAGTGTTCGAAGCCCTGGTCAAGACCTACCGGCAATGCGGGTCGGCGCCGTTCGTGTTTGATTACCTGATCAGAGCTTGTTTGGAGTCCAAGAAAATCGACCCGGCAATGCAGATTGTTAGAATGTTGCTCAGTCGCGGCATCAATCCTGGTTTGAACACCTGCAACAGTCTGATTCGGTGCGTAATGCAGGTTCGAGGTGCGTGGGCGGGTTATGAGATTTACAGAGAGGTTTTCGGATTGGATGGGGTTGCGAGAACTAGGCCGAATGTGCAGACTTTCAATGAATTGATGTTGGGGTTTTATCAGGACGGGGCGGTGGAGATGGTGGAGGAGATTTGGGACCAAATGCCGGAGTTTGGTTGCTGTGCCGATGTTTATAGTTACAGCATTTTGATGGAGACTTATTGTGAGGACGAGAAAATGAGTAAAGCGGAGGAGTTGTGGGAAGAAATGAGAGGTAAGGGTGTGGAGCCTGATGCCGTTGCTTATAACACTATGATTGGGGGGTTTTGCAGAGTTGGAGAGATTGAAATGGCTGAAGAGTTTTTCAAACAAATGGGATTGAGTGGGATAGAGAGTAGTGGTGCTGCTTGCGAGCATCTGGTTAGAGGGTACTGTAAAATAGGGAAAATTGATGAAGCAATGCTAGTGTATAAGGATATGCTTAGGAAAGATTTTAGGGCCGAGAGTTTAACTGTGGATGAGTTGATTAGAGGGCTTTGTGGTGAGAGCAGGGTTTTAGAAGCCTTGGAGGTTATGAGAGCGGCAATGATAGATTATGGTTTTTGTCCGAGGGAGAAGTCGTATGAGTTTTTGATAGGAGGGTTGTGTGAGCAGGGGAAGTTGGAAGAAGCACTTAAGCTTCAGGCTCAGATGGTGGGAAAAGGGTTTAAGCCGAACTCCGAAATCTATAGTGCATTTATTAGCGGCTATATGAAAGAAGGGAACACGGAAGTAGCAGAATTGTTGAGGAATGAAATGTTGGATACTCAGGTGTGTGGGATTGCGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

476

Amino Acids

53.78

Weight (kDa)

5.59

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 227 - 275 6.8e-10 PPR repeat family
PPR_1 PF12854 259 - 291 5.3e-08 PPR repeat
PPR_2 PF13041 269 - 311 1.4e-12 PPR repeat family
PPR_1 PF12854 293 - 325 2.6e-11 PPR repeat
PPR_2 PF13041 297 - 331 6.3e-09 PPR repeat family
PPR PF01535 300 - 330 5.3e-08 PPR repeat
PPR_2 PF13041 337 - 380 8.5e-07 PPR repeat family
PPR_2 PF13041 407 - 440 9.8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 906
AarI CACCTGC 1 cut(s) 584
Acc36I ACCTGC 2 cut(s) 584, 595
AccB1I GGYRCC 1 cut(s) 460
AccBSI CCGCTC 2 cut(s) 351, 1181
AccII CGCG 3 cut(s) 89, 387, 552
AclWI GGATC 1 cut(s) 156
AcuI CTGAAG 2 cut(s) 975, 1265
AcyI GRCGYC 2 cut(s) 390, 461
AfaI GTAC 1 cut(s) 1031
AfiI CCNNNNNNNGG 2 cut(s) 766, 773
AflII CTTAAG 1 cut(s) 1274
AgsI TTSAA 6 cut(s) 14, 22, 571, 697, 947, 967
AjnI CCWGG 2 cut(s) 429, 562
AjuI GAANNNNNNNTTGG 4 cut(s) 208, 240, 1382, 1414
AluBI AGCT 3 cut(s) 27, 491, 1279
AluI AGCT 3 cut(s) 27, 491, 1279
Alw26I GTCTC 2 cut(s) 145, 809
AlwI GGATC 1 cut(s) 156
AoxI GGCC 2 cut(s) 677, 1098
ApeKI GCWGC 1 cut(s) 1004
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
AspLEI GCGC 2 cut(s) 91, 463
AspS9I GGNCC 3 cut(s) 285, 757, 1098
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 202, 1154
AsuII TTCGAA 1 cut(s) 423
AvaII GGWCC 2 cut(s) 285, 757
BaeI ACNNNNGTAYC 2 cut(s) 1395, 1428
BanI GGYRCC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 991
BccI CCATC 6 cut(s) 152, 341, 653, 733, 805, 1285
BceAI ACGGC 3 cut(s) 76, 448, 881
BciT130I CCWGG 2 cut(s) 431, 564
BciVI GTATCC 1 cut(s) 1396
BclI TGATCA 1 cut(s) 483
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 2 cut(s) 145, 809
BfaI CTAG 2 cut(s) 675, 1064
BfmI CTRYAG 1 cut(s) 1327
BfoI RGCGCY 1 cut(s) 464
BfrI CTTAAG 1 cut(s) 1274
BfuAI ACCTGC 2 cut(s) 584, 595
BfuI GTATCC 1 cut(s) 1396
BisI GCNGC 5 cut(s) 6, 553, 1005, 1182, 1345
BlsI GCNGC 5 cut(s) 7, 554, 1006, 1183, 1346
Bme1390I CCNGG 3 cut(s) 431, 518, 564
Bme18I GGWCC 2 cut(s) 285, 757
BmgT120I GGNCC 3 cut(s) 285, 757, 1098
BmiI GGNNCC 5 cut(s) 287, 408, 462, 758, 888
BmrFI CCNGG 3 cut(s) 431, 518, 564
BmsI GCATC 3 cut(s) 564, 883, 1024
Bpu10I CCTNAGC 1 cut(s) 1082
Bpu14I TTCGAA 1 cut(s) 423
BpuMI CCSGG 1 cut(s) 518
BsaHI GRCGYC 2 cut(s) 390, 461
BsaJI CCNNGG 3 cut(s) 429, 1164, 1208
BsaXI ACNNNNNCTCC 8 cut(s) 68, 98, 302, 332, 842, 872, 1205, 1235
Bsc4I CCNNNNNNNGG 2 cut(s) 766, 773
Bse118I RCCGGY 1 cut(s) 444
Bse3DI GCAATG 4 cut(s) 455, 528, 1065, 1191
BseBI CCWGG 2 cut(s) 431, 564
BseDI CCNNGG 3 cut(s) 429, 1164, 1208
BseGI GGATG 5 cut(s) 144, 333, 339, 664, 1123
BseLI CCNNNNNNNGG 2 cut(s) 766, 773
BseMI GCAATG 4 cut(s) 455, 528, 1065, 1191
BseMII CTCAG 3 cut(s) 559, 1301, 1421
BseRI GAGGAG 5 cut(s) 53, 73, 305, 761, 866
BseXI GCAGC 1 cut(s) 991
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 3 cut(s) 89, 387, 552
BshFI GGCC 2 cut(s) 679, 1100
BshNI GGYRCC 1 cut(s) 460
BsiSI CCGG 4 cut(s) 204, 445, 518, 767
BslFI GGGAC 2 cut(s) 154, 770
BslI CCNNNNNNNGG 2 cut(s) 766, 773
BsmAI GTCTC 2 cut(s) 145, 809
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 154, 770
BsnI GGCC 2 cut(s) 679, 1100
Bsp119I TTCGAA 1 cut(s) 423
Bsp143I GATC 3 cut(s) 97, 161, 483
BspANI GGCC 2 cut(s) 679, 1100
BspCNI CTCAG 3 cut(s) 558, 1300, 1420
BspFNI CGCG 3 cut(s) 89, 387, 552
BspLI GGNNCC 5 cut(s) 287, 408, 462, 758, 888
BspMI ACCTGC 2 cut(s) 584, 595
BspPI GGATC 1 cut(s) 156
BspT104I TTCGAA 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 460
BspTI CTTAAG 1 cut(s) 1274
BsrBI CCGCTC 2 cut(s) 351, 1181
BsrDI GCAATG 4 cut(s) 455, 528, 1065, 1191
BsrFI RCCGGY 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 444
BssECI CCNNGG 3 cut(s) 429, 1164, 1208
BssMI GATC 3 cut(s) 97, 161, 483
BssNI GRCGYC 2 cut(s) 390, 461
BssT1I CCWWGG 1 cut(s) 1164
Bst2UI CCWGG 2 cut(s) 431, 564
Bst4CI ACNGT 3 cut(s) 584, 1034, 1114
Bst6I CTCTTC 1 cut(s) 951
BstACI GRCGYC 2 cut(s) 390, 461
BstAFI CTTAAG 1 cut(s) 1274
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 349, 1009, 1013
BstDEI CTNAG 4 cut(s) 545, 1082, 1287, 1407
BstF5I GGATG 5 cut(s) 144, 333, 339, 664, 1123
BstFNI CGCG 3 cut(s) 89, 387, 552
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 2 cut(s) 91, 463
BstKTI GATC 3 cut(s) 100, 164, 486
BstMAI GTCTC 2 cut(s) 145, 809
BstMBI GATC 3 cut(s) 97, 161, 483
BstMWI GCNNNNNNNGC 2 cut(s) 186, 685
BstNI CCWGG 2 cut(s) 431, 564
BstSCI CCNGG 3 cut(s) 429, 516, 562
BstSFI CTRYAG 1 cut(s) 1327
BstUI CGCG 3 cut(s) 89, 387, 552
BstV1I GCAGC 1 cut(s) 991
BsuI GTATCC 1 cut(s) 1396
BsuRI GGCC 2 cut(s) 679, 1100
BtsCI GGATG 5 cut(s) 144, 333, 339, 664, 1123
BveI ACCTGC 2 cut(s) 584, 595
Cac8I GCNNGC 3 cut(s) 349, 1009, 1013
CfoI GCGC 2 cut(s) 91, 463
Cfr10I RCCGGY 1 cut(s) 444
Cfr13I GGNCC 3 cut(s) 285, 757, 1098
CseI GACGC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 1030
CviQI GTAC 1 cut(s) 1030
DdeI CTNAG 4 cut(s) 545, 1082, 1287, 1407
DinI GGCGCC 1 cut(s) 462
DpnI GATC 3 cut(s) 99, 163, 485
DpnII GATC 3 cut(s) 97, 161, 483
Eam1104I CTCTTC 1 cut(s) 951
EarI CTCTTC 1 cut(s) 951
Eco130I CCWWGG 1 cut(s) 1164
Eco47I GGWCC 2 cut(s) 285, 757
Eco57I CTGAAG 2 cut(s) 975, 1265
EcoRII CCWGG 2 cut(s) 429, 562
EcoT14I CCWWGG 1 cut(s) 1164
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 1164
Esp3I CGTCTC 1 cut(s) 145
FalI AAGNNNNNCTT 2 cut(s) 1257, 1289
FaqI GGGAC 2 cut(s) 154, 770
FauI CCCGC 4 cut(s) 179, 356, 446, 616
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 5 cut(s) 6, 553, 1005, 1182, 1345
FokI GGATG 5 cut(s) 131, 320, 326, 671, 1130
Fsp4HI GCNGC 5 cut(s) 6, 553, 1005, 1182, 1345
FspBI CTAG 2 cut(s) 675, 1064
GlaI GCGC 2 cut(s) 90, 462
GluI GCNGC 5 cut(s) 6, 553, 1005, 1182, 1345
GsaI CCCAGC 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 2 cut(s) 679, 1100
HapII CCGG 4 cut(s) 204, 445, 518, 767
HgaI GACGC 1 cut(s) 398
HhaI GCGC 2 cut(s) 91, 463
Hin1I GRCGYC 2 cut(s) 390, 461
Hin6I GCGC 2 cut(s) 89, 461
HinP1I GCGC 2 cut(s) 89, 461
HindIII AAGCTT 1 cut(s) 1277
HinfI GANTC 2 cut(s) 500, 589
HpaII CCGG 4 cut(s) 204, 445, 518, 767
HphI GGTGA 2 cut(s) 202, 1154
Hpy188I TCNGA 9 cut(s) 97, 161, 406, 488, 588, 653, 1209, 1290, 1321
Hpy188III TCNNGA 2 cut(s) 436, 722
Hpy99I CGWCG 2 cut(s) 140, 392
HpyAV CCTTC 3 cut(s) 210, 331, 1352
HpyCH4III ACNGT 3 cut(s) 584, 1034, 1114
HpyCH4V TGCA 7 cut(s) 415, 526, 579, 604, 688, 930, 1334
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 685
HpyF3I CTNAG 4 cut(s) 545, 1082, 1287, 1407
Hsp92I GRCGYC 2 cut(s) 390, 461
HspAI GCGC 2 cut(s) 89, 461
KasI GGCGCC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 3 cut(s) 97, 161, 483
LmnI GCTCC 2 cut(s) 406, 886
Lsp1109I GCAGC 1 cut(s) 991
LweI GCATC 3 cut(s) 564, 883, 1024
MaeI CTAG 2 cut(s) 675, 1064
MaeIII GTNAC 1 cut(s) 797
MalI GATC 3 cut(s) 99, 163, 485
MbiI CCGCTC 2 cut(s) 351, 1181
MboI GATC 3 cut(s) 97, 161, 483
MboII GAAGA 5 cut(s) 10, 268, 875, 968, 1277
MluCI AATT 3 cut(s) 701, 1047, 1379
Mly113I GGCGCC 1 cut(s) 461
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 3 cut(s) 916, 1242, 1380
MseI TTAA 3 cut(s) 1109, 1275, 1308
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 1 cut(s) 174
MspCI CTTAAG 1 cut(s) 1274
MspI CCGG 4 cut(s) 204, 445, 518, 767
MspR9I CCNGG 3 cut(s) 431, 518, 564
MvaI CCWGG 2 cut(s) 431, 564
MvnI CGCG 3 cut(s) 89, 387, 552
MwoI GCNNNNNNNGC 2 cut(s) 186, 685
NarI GGCGCC 1 cut(s) 461
NciI CCSGG 1 cut(s) 518
NdeII GATC 3 cut(s) 97, 161, 483
NlaIV GGNNCC 5 cut(s) 287, 408, 462, 758, 888
NmeAIII GCCGAG 1 cut(s) 1126
NspV TTCGAA 1 cut(s) 423
PaqCI CACCTGC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 5 cut(s) 7, 554, 1006, 1183, 1346
PleI GAGTC 1 cut(s) 508
PluTI GGCGCC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 508
PsiI TTATAA 1 cut(s) 906
Psp6I CCWGG 2 cut(s) 429, 562
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 2 cut(s) 429, 562
PspN4I GGNNCC 5 cut(s) 287, 408, 462, 758, 888
PspPI GGNCC 3 cut(s) 285, 757, 1098
PsrI GAACNNNNNNTAC 2 cut(s) 591, 623
RsaI GTAC 1 cut(s) 1031
RsaNI GTAC 1 cut(s) 1030
RseI CAYNNNNRTG 1 cut(s) 809
SaqAI TTAA 3 cut(s) 1109, 1275, 1308
SatI GCNGC 5 cut(s) 6, 553, 1005, 1182, 1345
Sau3AI GATC 3 cut(s) 97, 161, 483
Sau96I GGNCC 3 cut(s) 285, 757, 1098
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 3 cut(s) 431, 518, 564
SfaNI GCATC 3 cut(s) 564, 883, 1024
SfcI CTRYAG 1 cut(s) 1327
SfoI GGCGCC 1 cut(s) 462
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 2 cut(s) 285, 757
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 1274
SmoI CTYRAG 1 cut(s) 1274
Sse9I AATT 3 cut(s) 701, 1047, 1379
SspDI GGCGCC 1 cut(s) 460
SspMI CTAG 2 cut(s) 675, 1064
StyD4I CCNGG 3 cut(s) 429, 516, 562
StyI CCWWGG 1 cut(s) 1164
TaaI ACNGT 3 cut(s) 584, 1034, 1114
TaqI TCGA 3 cut(s) 423, 513, 610
TasI AATT 3 cut(s) 701, 1047, 1379
TauI GCSGC 4 cut(s) 8, 555, 1184, 1347
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 3 cut(s) 1109, 1275, 1308
Tru9I TTAA 3 cut(s) 1109, 1275, 1308
TseI GCWGC 1 cut(s) 1004
TspDTI ATGAA 4 cut(s) 714, 1068, 1367, 1407
TspGWI ACGGA 2 cut(s) 124, 1382
Vha464I CTTAAG 1 cut(s) 1274
VpaK11BI GGWCC 2 cut(s) 285, 757
XspI CTAG 2 cut(s) 675, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.