Rroxscaffold_7G00202000

SNF2 domain-containing protein CLASSY

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
49842588 .. 49849143
6556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202000.1

Sequence Viewer

Length: 2760 bp
ATGGAGCCGGCAGTGGATATACGGCCCCGTAGAGACGTCACTTACGACGGTTTGTATTCCAAGGGGCATAAGAGGTTGAAATTGTCTTCTGATAGAAATGTATGTGATGGAACGGTCTTGTCTGGAAGTATGCATAGTGAAATTGTACAGAAGCCATGTTCTACTTCTGCAGTTGTCGATTACAGTGATCCATTAGCTATACAAAACTTGCTGGAGGGATTAGATGACAGTGGTAAATATGGAAGTGTTGCAAAGGACATAAAGACATTTACTGCTCAGATACATCAAGTACTGAATCCCTTGCTTGCAAAATACCCCACACTATCAAATGCATACTTTAAAGAGGAAAGAAGGCATAGTCAATTGGCTCCTAAATTAGCAATTCAACAAGCTCCGTCCCTAGCACAAAATAATGTCATTGATTTGGATGATGACTGTGTCGACAGTAATGCTCCAGCAGCATCATCGCCTATTGTAATCATTGATTCAGATGAGGAACAGAATGATGGTCAGAGGCCTTCTTACTCTTTCCAGGAGGTTTTTATGACACAACCATCTTTTTCTTTCAAGAATGTAATTCTGCCACAGCCATCTGAACAACGAGTTTTCAGGAAGCACTTTGGGGTGAGGGATCGAGCAGAAGAAGCAAGTCTGTCTGCTGGAACTGAAACAGATAAAGATCCAGGTGTTTATGTGGGTGTAGAAGATGAAGAAAGTACTGAAGATGATGATGGTTTAGGAGATGCATGGATGGAAATGTCAATGGCGTTAGAATCTTCAAGGGATGTCACTGTAGACCCTTTATCTGAAGAAAGAACGAGTGAAGGCGACTGTGAGCATTCTTTTGTCTTAAAAGATGATCTTGGATATGTTTGCCGCATCTGTGGGGTTATTGACAGAGGAATTGATAAAATATTTGAGTTTCAGTATAACAAGGTCAAAAGGAGTACAAGAACGTACATGCCTGATTCTCGTAATGGGAAAGACAGAGATTCAACTGAGATGGGTGGAGTTAAACTTTCTGAAGATGGTTTGATAATAACTGAAATATCTGCTCACCCAAGACATATGAAGCAAATGAAACCTCATCAAGTGGAGGGTTTCAATTTTCTTGTTAGCAACTTAGTTGGTGATAATCCTGGTGGTTGCATCTTGGCCCATGCTCCAGGTTCTGGTAAAACATTTATGATAATTAGTTTCATGCAAAGTTTCCTAGCCAAGTATCCAAATGCTAGACCGCTGGTTGTTCTTCCTAAGGGAATATTGGATACATGGAAAAAGGAGTTTAAATATTGGCAAGTAGAAGATATTCCTTTATTTGACTTCTATGAGGCCAAAGCAGACAATCGGTCACAGCAGTTGGAGGTTTTGAAGAAGTGGGTAGATCAGAAGAGCATCCTGTTCTTAGGGTACAAACAGTTCTCCTCTATTGTTTGTGATCGAGAAACTAGCCAGACATCAACTTCGTGCCAGGAGATATTGCTAAAGGCACCTTCAATTCTTATTATGGATGAAGGGCACACCCCTCGGAATGACAACACTGATGTATTCCAATCCATTGCAAAATTGCAGACACCTAGGAAAGTTGTACTTTCTGGAACTATTTATCAAAATCACGTGAAGGAAGTATTCAACATTCTGAATCTGGTTCGTCCTAAGTTTTTAAGATCAGAAACTTCCCGACCCATCATCAAGCGCATAATGAGTAGGGTAGATATAAAAGGTGCAAGGAAGCAGTTCAAGGCTGGTGCTGATAATGTTTTCTATGAACTAGTGGAGGATACTCTGCAGAGGGATACAGATTTCAGAAGGAAAGTGACTGTCATACATGACTTGCGTGAGATGACCAGCAAGGTCCTTCATTACTACAAAGGAGATTCCCTGGATGAGCTTCCTGGACTTGTTGATTTCACTGTGGTACTCAATCTAAGCGCCTGGCAGAAGCATAAATTCCAGAAGGAATTCAAGAAGTTTGCAAGGAAGTTCAAGCAAAGTTCAGTTGGCAGTGCTGTTTATCTGCACCCAAAATTGTACTCCGTCTCCAAGGACTGGAAACCCTCTGATTCAAATGAAAAGATGGATGAGTTGGTCGAGACTATAGACTTGAATGAAGGAATTAAGGCAAAATTCTTTTTGAATATGCTTAGGTTATGTGAGTCGTCTGGTGAGAAACTTTTGGTTTTCAGTCAGTACCTCCCACCTTTGAAATTTTTAGAGAGATTAACAGTCAAAACGAAGGGTTGGAGTCCTGGGAGAGAATTGTTTGTGATCACAGGGGAATCAAAGTCTGAGAATAGGGAGTGGTCCATGGAGAGATTTAACAATTCCCCTGATTCTAAGGTTTTCTTTGGCTCCATCAAAGCATGTGGAGAGGGTATATCTTTAGTAGGGGCTTCACGAGTCATAATTTTGGATGTCCATCTTAATCCCTCTGTGACCCGGCAAGCAATTGGCCGTGCATTTAGACCTGGTCAAAAGAAGAAAGTATTTGTATATAGATTGGTAGCTGCTGATTCCCCTGAAGAGGAAGATCATAGTACTTGCTTCCAAAAAGAATTAATTGCCAAAATGTGGTTTGAATGGAACGAATATTGTGGTTATCGGGATTTTGAAGTGGATACTGTTGATGTCAAAGATTGTGGTGATCTTTTTCTTGAAAGTCCAGTGTTGGGGGAAGATGTGAAGGTTCTGTACAGAAGGTCCTTCCATCATAGTAAGGCTGAGGTACAGAGTAGGGAAAGTAGTCACAGAAGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

919

Amino Acids

104.5

Weight (kDa)

6.16

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 359 - 535 2.3e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 363 - 667 1.4e-26 SNF2-related domain
Helicase_C PF00271 710 - 824 3.5e-14 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 1489
AccB7I CCANNNNNTGG 3 cut(s) 1172, 2049, 2571
AccI GTMKAC 2 cut(s) 441, 795
AciI CCGC 2 cut(s) 877, 1238
AclWI GGATC 3 cut(s) 182, 639, 674
AcoI YGGCCR 1 cut(s) 2452
AcsI RAATTY 4 cut(s) 1949, 1961, 2126, 2207
AcuI CTGAAG 4 cut(s) 741, 828, 1044, 2541
AcvI CACGTG 1 cut(s) 1618
AcyI GRCGYC 1 cut(s) 36
AfiI CCNNNNNNNGG 5 cut(s) 1172, 2049, 2524, 2571, 2669
AhdI GACNNNNNGTC 1 cut(s) 1348
AhlI ACTAGT 1 cut(s) 1771
AluBI AGCT 4 cut(s) 197, 392, 1891, 2507
AluI AGCT 4 cut(s) 197, 392, 1891, 2507
Alw26I GTCTC 3 cut(s) 27, 2044, 2087
AlwI GGATC 3 cut(s) 182, 639, 674
AlwNI CAGNNNCTG 1 cut(s) 1172
AoxI GGCC 5 cut(s) 23, 515, 1155, 1332, 2452
ApeKI GCWGC 2 cut(s) 458, 2507
ApoI RAATTY 4 cut(s) 1949, 1961, 2126, 2207
ArsI GACNNNNNNTTYG 2 cut(s) 1447, 1479
AseI ATTAAT 1 cut(s) 2558
Asp700I GAANNNNTTC 3 cut(s) 1308, 1736, 1961
AspA2I CCTAGG 1 cut(s) 1577
AspLEI GCGC 2 cut(s) 1698, 1934
AspS9I GGNCC 5 cut(s) 24, 1156, 1855, 2304, 2700
AsuC2I CCSGG 1 cut(s) 2440
AsuHPI GGTGA 5 cut(s) 637, 1049, 1142, 2177, 2654
AvaII GGWCC 3 cut(s) 1855, 2304, 2700
AvrII CCTAGG 1 cut(s) 1577
AxyI CCTNAGG 1 cut(s) 1254
BaeGI GKGCMC 1 cut(s) 1521
BanI GGYRCC 1 cut(s) 1489
BarI GAAGNNNNNNTAC 2 cut(s) 2675, 2707
BauI CACGAG 1 cut(s) 2397
BbrPI CACGTG 1 cut(s) 1618
BbsI GAAGAC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 2721
BbvI GCAGC 2 cut(s) 470, 2494
BceAI ACGGC 2 cut(s) 38, 2439
BcgI CGANNNNNNTGC 6 cut(s) 431, 447, 465, 481, 1508, 1542
BciVI GTATCC 5 cut(s) 1233, 1261, 1774, 1789, 2611
BclI TGATCA 1 cut(s) 2268
BcnI CCSGG 1 cut(s) 2440
BcoDI GTCTC 3 cut(s) 27, 2044, 2087
BcuI ACTAGT 1 cut(s) 1771
BfaI CTAG 6 cut(s) 401, 1214, 1233, 1449, 1578, 1772
BfmI CTRYAG 4 cut(s) 168, 792, 1787, 2097
BfoI RGCGCY 1 cut(s) 1935
BfuI GTATCC 5 cut(s) 1233, 1261, 1774, 1789, 2611
BisI GCNGC 3 cut(s) 459, 877, 2508
BlnI CCTAGG 1 cut(s) 1577
BlsI GCNGC 3 cut(s) 460, 878, 2509
BmcAI AGTACT 3 cut(s) 291, 718, 2539
Bme18I GGWCC 3 cut(s) 1855, 2304, 2700
BmeRI GACNNNNNGTC 1 cut(s) 1348
BmgT120I GGNCC 5 cut(s) 24, 1156, 1855, 2304, 2700
BmiI GGNNCC 5 cut(s) 6, 26, 369, 1491, 2353
BmsI GCATC 5 cut(s) 470, 733, 888, 1158, 1404
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 3 cut(s) 233, 438, 1149
Bpu10I CCTNAGC 2 cut(s) 2144, 2721
BpuMI CCSGG 1 cut(s) 2440
BsaAI YACGTR 1 cut(s) 1618
BsaBI GATNNNNATC 2 cut(s) 678, 2418
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 7 cut(s) 60, 1526, 1577, 1881, 2043, 2249, 2307
BsaXI ACNNNNNCTCC 2 cut(s) 2024, 2054
Bsc4I CCNNNNNNNGG 5 cut(s) 1172, 2049, 2524, 2571, 2669
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 2 cut(s) 2054, 2663
Bse21I CCTNAGG 1 cut(s) 1254
Bse3DI GCAATG 1 cut(s) 1557
Bse8I GATNNNNATC 2 cut(s) 678, 2418
BseDI CCNNGG 7 cut(s) 60, 1526, 1577, 1881, 2043, 2249, 2307
BseGI GGATG 8 cut(s) 433, 756, 790, 1395, 1516, 1891, 2086, 2419
BseJI GATNNNNATC 2 cut(s) 678, 2418
BseLI CCNNNNNNNGG 5 cut(s) 1172, 2049, 2524, 2571, 2669
BseMI GCAATG 1 cut(s) 1557
BseMII CTCAG 4 cut(s) 290, 990, 2280, 2712
BseNI ACTGG 2 cut(s) 2054, 2663
BseRI GAGGAG 1 cut(s) 1414
BseSI GKGCMC 1 cut(s) 1521
BseXI GCAGC 2 cut(s) 470, 2494
BsgI GTGCAG 1 cut(s) 2003
BshFI GGCC 5 cut(s) 25, 517, 1157, 1334, 2454
BshNI GGYRCC 1 cut(s) 1489
BsiSI CCGG 2 cut(s) 8, 2440
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 5 cut(s) 1172, 2049, 2524, 2571, 2669
BsmAI GTCTC 3 cut(s) 27, 2044, 2087
BsmBI CGTCTC 2 cut(s) 27, 2044
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 5 cut(s) 25, 517, 1157, 1334, 2454
Bsp1286I GDGCHC 1 cut(s) 1521
Bsp1407I TGTACA 2 cut(s) 145, 2691
Bsp19I CCATGG 1 cut(s) 2307
BspACI CCGC 2 cut(s) 877, 1238
BspANI GGCC 5 cut(s) 25, 517, 1157, 1334, 2454
BspCNI CTCAG 4 cut(s) 289, 991, 2281, 2713
BspLI GGNNCC 5 cut(s) 6, 26, 369, 1491, 2353
BspMAI CTGCAG 2 cut(s) 172, 1791
BspPI GGATC 3 cut(s) 182, 639, 674
BspQI GCTCTTC 1 cut(s) 1385
BspT107I GGYRCC 1 cut(s) 1489
BsrDI GCAATG 1 cut(s) 1557
BsrFI RCCGGY 1 cut(s) 7
BsrGI TGTACA 2 cut(s) 145, 2691
BsrI ACTGG 2 cut(s) 2054, 2663
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 7 cut(s) 60, 1526, 1577, 1881, 2043, 2249, 2307
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 2397
BssT1I CCWWGG 4 cut(s) 60, 1577, 2043, 2307
Bst2BI CACGAG 1 cut(s) 2397
Bst6I CTCTTC 2 cut(s) 1385, 2517
BstACI GRCGYC 1 cut(s) 36
BstAUI TGTACA 2 cut(s) 145, 2691
BstBAI YACGTR 1 cut(s) 1618
BstC8I GCNNGC 3 cut(s) 9, 306, 2445
BstDSI CCRYGG 1 cut(s) 2307
BstF5I GGATG 8 cut(s) 433, 756, 790, 1395, 1516, 1891, 2086, 2419
BstH2I RGCGCY 1 cut(s) 1935
BstHHI GCGC 2 cut(s) 1698, 1934
BstMAI GTCTC 3 cut(s) 27, 2044, 2087
BstMWI GCNNNNNNNGC 2 cut(s) 458, 644
BstNSI RCATGY 2 cut(s) 964, 2367
BstSFI CTRYAG 4 cut(s) 168, 792, 1787, 2097
BstSLI GKGCMC 1 cut(s) 1521
BstV1I GCAGC 2 cut(s) 470, 2494
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
Bsu36I CCTNAGG 1 cut(s) 1254
BsuI GTATCC 5 cut(s) 1233, 1261, 1774, 1789, 2611
BsuRI GGCC 5 cut(s) 25, 517, 1157, 1334, 2454
BtgI CCRYGG 1 cut(s) 2307
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 8 cut(s) 433, 756, 790, 1395, 1516, 1891, 2086, 2419
BtsI GCAGTG 2 cut(s) 18, 2011
BtsIMutI CAGTG 8 cut(s) 18, 190, 235, 789, 1539, 1911, 2011, 2670
Cac8I GCNNGC 3 cut(s) 9, 306, 2445
CaiI CAGNNNCTG 1 cut(s) 1172
CfoI GCGC 2 cut(s) 1698, 1934
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 5 cut(s) 24, 1156, 1855, 2304, 2700
CsiI ACCWGGT 1 cut(s) 2467
CspCI CAANNNNNGTGG 4 cut(s) 2347, 2382, 2620, 2655
CviAII CATG 9 cut(s) 156, 747, 961, 1160, 1201, 1272, 1829, 2308, 2364
DraI TTTAAA 2 cut(s) 340, 1288
DriI GACNNNNNGTC 1 cut(s) 1348
EaeI YGGCCR 1 cut(s) 2452
Eam1104I CTCTTC 2 cut(s) 1385, 2517
Eam1105I GACNNNNNGTC 1 cut(s) 1348
EarI CTCTTC 2 cut(s) 1385, 2517
Eco130I CCWWGG 4 cut(s) 60, 1577, 2043, 2307
Eco147I AGGCCT 1 cut(s) 517
Eco47I GGWCC 3 cut(s) 1855, 2304, 2700
Eco57I CTGAAG 4 cut(s) 741, 828, 1044, 2541
Eco72I CACGTG 1 cut(s) 1618
Eco81I CCTNAGG 1 cut(s) 1254
EcoO109I RGGNCCY 2 cut(s) 1855, 2700
EcoRI GAATTC 1 cut(s) 1961
EcoT14I CCWWGG 4 cut(s) 60, 1577, 2043, 2307
EcoT22I ATGCAT 3 cut(s) 135, 334, 748
ErhI CCWWGG 4 cut(s) 60, 1577, 2043, 2307
Esp3I CGTCTC 2 cut(s) 27, 2044
FaeI CATG 9 cut(s) 159, 750, 964, 1163, 1204, 1275, 1832, 2311, 2367
FalI AAGNNNNNCTT 6 cut(s) 846, 878, 1575, 1607, 2330, 2362
FaqI GGGAC 1 cut(s) 382
FatI CATG 9 cut(s) 155, 746, 960, 1159, 1200, 1271, 1828, 2307, 2363
FauNDI CATATG 1 cut(s) 1068
FbaI TGATCA 1 cut(s) 2268
FblI GTMKAC 2 cut(s) 441, 795
Fnu4HI GCNGC 3 cut(s) 459, 877, 2508
FokI GGATG 8 cut(s) 440, 763, 797, 1382, 1523, 1898, 2093, 2426
Fsp4HI GCNGC 3 cut(s) 459, 877, 2508
FspBI CTAG 6 cut(s) 401, 1214, 1233, 1449, 1578, 1772
GlaI GCGC 2 cut(s) 1697, 1933
GluI GCNGC 3 cut(s) 459, 877, 2508
GsuI CTGGAG 3 cut(s) 233, 438, 1149
HaeII RGCGCY 1 cut(s) 1935
HaeIII GGCC 5 cut(s) 25, 517, 1157, 1334, 2454
HapII CCGG 2 cut(s) 8, 2440
HhaI GCGC 2 cut(s) 1698, 1934
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 9 cut(s) 159, 750, 964, 1163, 1204, 1275, 1832, 2311, 2367
Hin6I GCGC 2 cut(s) 1696, 1932
HinP1I GCGC 2 cut(s) 1696, 1932
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HpaII CCGG 2 cut(s) 8, 2440
HphI GGTGA 5 cut(s) 637, 1049, 1142, 2177, 2654
Hpy166II GTNNAC 2 cut(s) 442, 796
Hpy8I GTNNAC 2 cut(s) 442, 796
Hpy99I CGWCG 1 cut(s) 50
HpyCH4IV ACGT 3 cut(s) 36, 956, 1617
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 644
HpySE526I ACGT 3 cut(s) 36, 956, 1617
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 9 cut(s) 159, 750, 964, 1163, 1204, 1275, 1832, 2311, 2367
HspAI GCGC 2 cut(s) 1696, 1932
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 2268
LguI GCTCTTC 1 cut(s) 1385
LmnI GCTCC 6 cut(s) 4, 373, 397, 457, 1168, 2357
Lsp1109I GCAGC 2 cut(s) 470, 2494
LweI GCATC 5 cut(s) 470, 733, 888, 1158, 1404
MabI ACCWGGT 1 cut(s) 2467
MaeI CTAG 6 cut(s) 401, 1214, 1233, 1449, 1578, 1772
MaeII ACGT 3 cut(s) 36, 956, 1617
MaeIII GTNAC 6 cut(s) 37, 787, 1350, 1816, 2434, 2744
MfeI CAATTG 2 cut(s) 362, 2448
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 1521
MlyI GAGTC 3 cut(s) 2165, 2254, 2409
MmeI TCCRAC 2 cut(s) 1341, 2222
Mph1103I ATGCAT 3 cut(s) 135, 334, 748
MroNI GCCGGC 1 cut(s) 7
MroXI GAANNNNTTC 3 cut(s) 1308, 1736, 1961
MspA1I CMGCKG 1 cut(s) 1240
MspI CCGG 2 cut(s) 8, 2440
MunI CAATTG 2 cut(s) 362, 2448
Mva1269I GAATGC 1 cut(s) 838
MwoI GCNNNNNNNGC 2 cut(s) 458, 644
NaeI GCCGGC 1 cut(s) 9
NciI CCSGG 1 cut(s) 2440
NcoI CCATGG 1 cut(s) 2307
NdeI CATATG 1 cut(s) 1068
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 9 cut(s) 159, 750, 964, 1163, 1204, 1275, 1832, 2311, 2367
NlaIV GGNNCC 5 cut(s) 6, 26, 369, 1491, 2353
NmuCI GTSAC 6 cut(s) 37, 787, 1350, 1816, 2434, 2744
NsiI ATGCAT 3 cut(s) 135, 334, 748
NspI RCATGY 2 cut(s) 964, 2367
PceI AGGCCT 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 1385
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 838
PdiI GCCGGC 1 cut(s) 9
PdmI GAANNNNTTC 3 cut(s) 1308, 1736, 1961
PflFI GACNNNGTC 2 cut(s) 437, 2469
PflMI CCANNNNNTGG 3 cut(s) 1172, 2049, 2571
PfoI TCCNGGA 2 cut(s) 531, 1894
PkrI GCNGC 3 cut(s) 460, 878, 2509
PleI GAGTC 3 cut(s) 2164, 2253, 2408
PmaCI CACGTG 1 cut(s) 1618
PmlI CACGTG 1 cut(s) 1618
PpsI GAGTC 3 cut(s) 2164, 2253, 2408
Ppu21I YACGTR 1 cut(s) 1618
PpuMI RGGWCCY 2 cut(s) 1855, 2700
PshBI ATTAAT 1 cut(s) 2558
Psp5II RGGWCCY 2 cut(s) 1855, 2700
PspCI CACGTG 1 cut(s) 1618
PspN4I GGNNCC 5 cut(s) 6, 26, 369, 1491, 2353
PspPI GGNCC 5 cut(s) 24, 1156, 1855, 2304, 2700
PspPPI RGGWCCY 2 cut(s) 1855, 2700
PsrI GAACNNNNNNTAC 2 cut(s) 1403, 1435
PstI CTGCAG 2 cut(s) 172, 1791
PstNI CAGNNNCTG 1 cut(s) 1172
PsuI RGATCY 1 cut(s) 679
PsyI GACNNNGTC 2 cut(s) 437, 2469
SalI GTCGAC 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 1385
SatI GCNGC 3 cut(s) 459, 877, 2508
Sau96I GGNCC 5 cut(s) 24, 1156, 1855, 2304, 2700
ScaI AGTACT 3 cut(s) 291, 718, 2539
SchI GAGTC 3 cut(s) 2165, 2254, 2409
SduI GDGCHC 1 cut(s) 1521
SexAI ACCWGGT 1 cut(s) 2467
SfaNI GCATC 5 cut(s) 470, 733, 888, 1158, 1404
SfcI CTRYAG 4 cut(s) 168, 792, 1787, 2097
SinI GGWCC 3 cut(s) 1855, 2304, 2700
SpeI ACTAGT 1 cut(s) 1771
SseBI AGGCCT 1 cut(s) 517
SsiI CCGC 2 cut(s) 877, 1238
SspI AATATT 4 cut(s) 915, 1263, 1292, 2591
SspMI CTAG 6 cut(s) 401, 1214, 1233, 1449, 1578, 1772
StuI AGGCCT 1 cut(s) 517
StyI CCWWGG 4 cut(s) 60, 1577, 2043, 2307
TaiI ACGT 3 cut(s) 39, 959, 1620
TaqI TCGA 5 cut(s) 177, 441, 634, 1441, 2091
TaqII GACCGA 1 cut(s) 1338
TatI WGTACW 8 cut(s) 145, 289, 716, 947, 1588, 2031, 2537, 2691
TauI GCSGC 1 cut(s) 879
TscAI CASTG 8 cut(s) 18, 190, 235, 796, 1546, 1918, 2011, 2670
TseFI GTSAC 6 cut(s) 37, 787, 1350, 1816, 2434, 2744
TseI GCWGC 2 cut(s) 458, 2507
Tsp45I GTSAC 6 cut(s) 37, 787, 1350, 1816, 2434, 2744
TspDTI ATGAA 9 cut(s) 723, 1085, 1094, 1189, 1527, 1782, 1850, 2085, 2124
TspGWI ACGGA 2 cut(s) 384, 2026
TspRI CASTG 8 cut(s) 18, 190, 235, 796, 1546, 1918, 2011, 2670
Tth111I GACNNNGTC 2 cut(s) 437, 2469
Van91I CCANNNNNTGG 3 cut(s) 1172, 2049, 2571
VpaK11BI GGWCC 3 cut(s) 1855, 2304, 2700
VspI ATTAAT 1 cut(s) 2558
XapI RAATTY 4 cut(s) 1949, 1961, 2126, 2207
XceI RCATGY 2 cut(s) 964, 2367
XmaJI CCTAGG 1 cut(s) 1577
XmiI GTMKAC 2 cut(s) 441, 795
XmnI GAANNNNTTC 3 cut(s) 1308, 1736, 1961
XspI CTAG 6 cut(s) 401, 1214, 1233, 1449, 1578, 1772
ZraI GACGTC 1 cut(s) 37
ZrmI AGTACT 3 cut(s) 291, 718, 2539
Zsp2I ATGCAT 3 cut(s) 135, 334, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.