Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008373

Physical Location & Seq

Genomic Coordinates Reverse (-)

9281986 .. 9282387

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTTCTAACACAAGTTTCCTCTTTGCCACCATCGCTATCCTCCTCGTTCTCAACATCTCCGGAAGAACTCTCCCGGAGACGGAAGATTCCACAAACATAGCGGCAAGACTCAACGGAGGAGGACTAATGGAGTGTTGGAACGCACTTTATGAGCTCAAATCATGCACCAACGAAATCGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGAGGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTACCTCTGATGAAACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCTCCGGCGCCTTCCTCTGTGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005576 GO:0008150 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0031982 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043900 GO:0044703 GO:0050789 GO:0051704 GO:0060341 GO:0065007 GO:0080154 GO:0080155 GO:1903827 GO:2000008 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

125

Amino Acids

13.3

Weight (kDa)

4.34

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	45 - 108	1.5e-19	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21740 AT2G21750 AT4G39340
fragaria_vesca	FvH4_1g23830 FvH4_4g25660
malus_domestica	MD01G1001000.v1.1 MD15G1340900.v1.1
prunus_persica	Prupe.6G161600_v2.0.a1
pyrus_communis	pycom15g30040
rosa_chinensis	RchiOBHm_Chr2g0119721 RchiOBHm_Chr2g0119751
rosa_laevigata	RLG00000018487 RLG00000018490
rosa_multiflora	Rmu_sc0001501.1_g000060 Rmu_sc0001501.1_g000085
rosa_roxburghii	Rroxscaffold_2G00124100 Rroxscaffold_2G00124190
rosa_rugosa	Rorug02G0223000 Rorug02G0223400
rosa_samantha	Rh2BG292600 Rh2DG287500
rosa_wichuraiana	Rw2G022440 Rw2G022470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	1 cut(s)	104
AclI	AACGTT	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	334
AcyI	GRCGYC	2 cut(s)	216, 356
AfiI	CCNNNNNNNGG	3 cut(s)	82, 258, 338
AjiI	CACGTC	1 cut(s)	276
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	74, 282
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	212, 238
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	74, 282
BfaI	CTAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	2 cut(s)	216, 356
BsaWI	WCCGGW	2 cut(s)	62, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 258, 338
BseAI	TCCGGA	1 cut(s)	62
BseLI	CCNNNNNNNGG	3 cut(s)	82, 258, 338
BseRI	GAGGAG	2 cut(s)	35, 135
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	63, 77, 339, 353
BslI	CCNNNNNNNGG	3 cut(s)	82, 258, 338
BsmAI	GTCTC	2 cut(s)	74, 282
BsmBI	CGTCTC	2 cut(s)	74, 282
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	62
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	262
BspEI	TCCGGA	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	355
BssNI	GRCGYC	2 cut(s)	216, 356
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	2 cut(s)	216, 356
BstC8I	GCNNGC	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstMAI	GTCTC	2 cut(s)	74, 282
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 222, 268
BstSCI	CCNGG	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	262
BtgZI	GCGATG	2 cut(s)	19, 281
BtrI	CACGTC	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	358
CseI	GACGC	1 cut(s)	205
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	5 cut(s)	5, 157, 233, 262, 285
CviKI_1	RGCY	5 cut(s)	5, 157, 233, 262, 285
DinI	GGCGCC	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	159
EgeI	GGCGCC	1 cut(s)	357
EheI	GGCGCC	1 cut(s)	357
Esp3I	CGTCTC	2 cut(s)	74, 282
FaeI	CATG	1 cut(s)	168
FaiI	YATR	3 cut(s)	101, 153, 166
FatI	CATG	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	4 cut(s)	63, 77, 339, 353
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	2 cut(s)	216, 356
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	2 cut(s)	89, 111
HpaII	CCGG	4 cut(s)	63, 77, 339, 353
HphI	GGTGA	2 cut(s)	212, 238
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	63
Hpy99I	CGWCG	2 cut(s)	221, 239
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	275, 306
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 222, 268
HpySE526I	ACGT	2 cut(s)	275, 306
Hsp92I	GRCGYC	2 cut(s)	216, 356
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	356
KasI	GGCGCC	1 cut(s)	355
Kpn2I	TCCGGA	1 cut(s)	62
LpnPI	CCDG	5 cut(s)	76, 90, 276, 352, 366
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	2 cut(s)	275, 306
MboII	GAAGA	6 cut(s)	78, 98, 178, 181, 302, 339
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	334
Mly113I	GGCGCC	1 cut(s)	356
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	9 cut(s)	32, 53, 56, 113, 116, 203, 232, 301, 373
MroI	TCCGGA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	180
MspI	CCGG	4 cut(s)	63, 77, 339, 353
MspR9I	CCNGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	35, 222, 268
NarI	GGCGCC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	77
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	357
NmeAIII	GCCGAG	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	105
PluTI	GGCGCC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	159
Psp1406I	AACGTT	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	159, 243, 278, 293, 309
SfaNI	GCATC	1 cut(s)	258
SfoI	GGCGCC	1 cut(s)	357
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	104
SspDI	GGCGCC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	2 cut(s)	278, 309
TaqI	TCGA	2 cut(s)	219, 237
TasI	AATT	1 cut(s)	334
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	2 cut(s)	98, 132
XapI	RAATTY	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.