Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008373

Physical Location & Seq

Genomic Coordinates Reverse (-)

21598071 .. 21598736

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0223000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGACATACTCAGATAGGTCAGAATCGTCCGATGAAGAAATGATAGGATCCGGAAGAACATGGATATTGAATGCTGAGGTAGAATCAGAAAGAGAGGAAAATGCAGAGAAAGAAGAAGAAGATGGTGACGACATGGATGAAGACGAAGCACCCAATAACCAACCATCTAATGCTGGAGATCACGAGGGTAATAGTGGGACTTCAGCTAGCAGGGAAGGCTTCAATATTGTGATACTGTTAACTGACCCAGGACTGCTTGATTGCCCAATTTTCTTTGAACCCTTGACCGTGCCTGTCTTTCAGTGTGATCAAAATGGGCATATAGCTTGCTTCTTGTGCTGCACCAAAATTAATAACAAATGCCCCTCTTGTTCCGGCCCCATTCGCTCTAATCGTTGCCGGGCCATCGAGAAAGTTCTGGAATCAAGTACAACTCCATGCCAAAATATCAAGTATGGCTGCAATACTCCGGTGACTTACAACAAGAAGAATGAACATGAGAAGACGTGTGTATTTTCGCCTTGCTCATGCCCTTATGTAGGCTGCAATTTTGTATCTTCAACCAAGGAGTTATACCAACACTTCAATAATGATCATTTGGATTCGGCAACAGGTTTCCTGTATGACTTGAGCTTATTTCAGTTTCCCAGTTACATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

221

Amino Acids

24.62

Weight (kDa)

4.45

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	89 - 125	1.9e-07	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	139 - 200	3.7e-14	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21740 AT2G21750 AT4G39340
fragaria_vesca	FvH4_1g23830 FvH4_4g25660
malus_domestica	MD01G1001000.v1.1 MD15G1340900.v1.1
prunus_persica	Prupe.6G161600_v2.0.a1
pyrus_communis	pycom15g30040
rosa_chinensis	RchiOBHm_Chr2g0119721 RchiOBHm_Chr2g0119751
rosa_laevigata	RLG00000018487 RLG00000018490
rosa_multiflora	Rmu_sc0001501.1_g000060 Rmu_sc0001501.1_g000085
rosa_roxburghii	Rroxscaffold_2G00124100 Rroxscaffold_2G00124190
rosa_rugosa	Rorug02G0223000 Rorug02G0223400
rosa_samantha	Rh2BG292600 Rh2DG287500
rosa_wichuraiana	Rw2G022440 Rw2G022470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AclWI	GGATC	2 cut(s)	45, 58
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	509
AgsI	TTSAA	6 cut(s)	73, 226, 281, 564, 589, 662
AjiI	CACGTC	1 cut(s)	510
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	209, 329, 636
AluI	AGCT	3 cut(s)	209, 329, 636
AlwI	GGATC	2 cut(s)	45, 58
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	2 cut(s)	379, 405
ApeKI	GCWGC	3 cut(s)	342, 462, 546
AseI	ATTAAT	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	380, 405
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	140, 487
AsuNHI	GCTAGC	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	150, 512
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	329, 449, 533
BccI	CCATC	3 cut(s)	119, 175, 416
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	2 cut(s)	310, 595
BcnI	CCSGG	1 cut(s)	404
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	3 cut(s)	343, 463, 547
BlsI	GCNGC	3 cut(s)	344, 464, 548
Bme1390I	CCNGG	2 cut(s)	252, 404
BmgBI	CACGTC	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	380, 405
BmiI	GGNNCC	2 cut(s)	52, 382
BmrFI	CCNGG	2 cut(s)	252, 404
BmrI	ACTGGG	1 cut(s)	645
BmtI	GCTAGC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	2 cut(s)	150, 512
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	250, 567
BsaWI	WCCGGW	2 cut(s)	53, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	250, 567
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMII	CTCAG	2 cut(s)	27, 69
BseNI	ACTGG	1 cut(s)	651
BseXI	GCAGC	3 cut(s)	329, 449, 533
BsgI	GTGCAG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	381, 407
BsiSI	CCGG	4 cut(s)	54, 378, 403, 473
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	381, 407
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	50, 181, 310, 595
BspANI	GGCC	2 cut(s)	381, 407
BspCNI	CTCAG	2 cut(s)	26, 70
BspEI	TCCGGA	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	52, 382
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	45, 58
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	2 cut(s)	250, 567
BssMI	GATC	4 cut(s)	50, 181, 310, 595
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	240, 292
BstC8I	GCNNGC	2 cut(s)	211, 331
BstDEI	CTNAG	2 cut(s)	13, 78
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	4 cut(s)	53, 184, 313, 598
BstMBI	GATC	4 cut(s)	50, 181, 310, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 339, 387
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	250, 402
BstV1I	GCAGC	3 cut(s)	329, 449, 533
BstV2I	GAAGAC	2 cut(s)	150, 512
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	381, 407
BtrI	CACGTC	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	211, 331
Cfr13I	GGNCC	2 cut(s)	380, 405
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	5 cut(s)	63, 136, 441, 500, 531
CviJI	RGCY	8 cut(s)	209, 222, 329, 381, 407, 462, 546, 636
CviKI_1	RGCY	8 cut(s)	209, 222, 329, 381, 407, 462, 546, 636
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	2 cut(s)	13, 78
DpnI	GATC	4 cut(s)	52, 183, 312, 597
DpnII	GATC	4 cut(s)	50, 181, 310, 595
Eco130I	CCWWGG	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	5 cut(s)	66, 139, 444, 503, 534
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	5 cut(s)	62, 135, 440, 499, 530
FbaI	TGATCA	2 cut(s)	310, 595
Fnu4HI	GCNGC	3 cut(s)	343, 463, 547
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	343, 463, 547
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	3 cut(s)	343, 463, 547
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	381, 407
HapII	CCGG	4 cut(s)	54, 378, 403, 473
Hin1II	CATG	5 cut(s)	66, 139, 444, 503, 534
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	4 cut(s)	26, 86, 425, 605
HpaI	GTTAAC	1 cut(s)	243
HpaII	CCGG	4 cut(s)	54, 378, 403, 473
HphI	GGTGA	2 cut(s)	140, 487
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	4 cut(s)	16, 25, 34, 91
Hpy188III	TCNNGA	4 cut(s)	54, 185, 412, 422
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	2 cut(s)	240, 292
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	4 cut(s)	107, 345, 465, 549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 339, 387
HpyF3I	CTNAG	2 cut(s)	13, 78
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	5 cut(s)	66, 139, 444, 503, 534
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	2 cut(s)	310, 595
KspAI	GTTAAC	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	50, 181, 310, 595
Lsp1109I	GCAGC	3 cut(s)	329, 449, 533
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	3 cut(s)	128, 475, 653
MalI	GATC	4 cut(s)	52, 183, 312, 597
MboI	GATC	4 cut(s)	50, 181, 310, 595
MboII	GAAGA	9 cut(s)	50, 69, 128, 131, 134, 155, 502, 517, 552
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	3 cut(s)	270, 351, 550
MnlI	CCTC	4 cut(s)	73, 91, 181, 379
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	2 cut(s)	242, 354
MspI	CCGG	4 cut(s)	54, 378, 403, 473
MspR9I	CCNGG	2 cut(s)	252, 404
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	219, 339, 387
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	4 cut(s)	50, 181, 310, 595
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	5 cut(s)	66, 139, 444, 503, 534
NlaIV	GGNNCC	2 cut(s)	52, 382
NmuCI	GTSAC	2 cut(s)	128, 475
PcsI	WCGNNNNNNNCGW	1 cut(s)	394
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	4 cut(s)	26, 86, 425, 605
PkrI	GCNGC	3 cut(s)	344, 464, 548
PshBI	ATTAAT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	52, 382
PspPI	GGNCC	2 cut(s)	380, 405
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	242, 354
SatI	GCNGC	3 cut(s)	343, 463, 547
Sau3AI	GATC	4 cut(s)	50, 181, 310, 595
Sau96I	GGNCC	2 cut(s)	380, 405
ScrFI	CCNGG	2 cut(s)	252, 404
SetI	ASST	7 cut(s)	23, 84, 211, 331, 512, 619, 638
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	3 cut(s)	270, 351, 550
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	250, 402
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	240, 292
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	270, 351, 550
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	26, 86, 425, 605
Tru1I	TTAA	2 cut(s)	242, 354
Tru9I	TTAA	2 cut(s)	242, 354
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	128, 475
TseI	GCWGC	3 cut(s)	342, 462, 546
Tsp45I	GTSAC	2 cut(s)	128, 475
TspDTI	ATGAA	3 cut(s)	51, 156, 510
TspRI	CASTG	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	540
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.