AT4G39340

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008373
Physical Location & Seq
Reverse (-)
18293129 .. 18293512
384 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39340.1

Sequence Viewer

Length: 384 bp
ATGGCTTCGAACACTACTTTCCTCTTCTCCACCGTCACACTTCTCATCATCCTCCTAAACACCACCGTCTCCGGTAGAGATCTCCCAGCGGAGTCATCAACCAACATAGCTGCGAGGCTCCAAAGTGGAGGACTGATGGAATGCTGGAACGCATTATACGAGCTGAAATCATGCACCAACGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGTGTTAGTTGTTGCGAATCCGTAGACATCATCACCACCAATTGCTGGCCGGCGATGCTCACTTCTCTCGGATTTACGCCTGAGGAAGCTAATGTCCTTCGTGGCTTTTGTCAGAATCCAAACTCCGGCGACTCTTCTCCGGCTCCGTCTCCCAAAATAGTTTGA

Protein Analysis

127

Amino Acids

13.61

Weight (kDa)

4.44

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 47 - 110 1.3e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 264
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 264, 344
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 3 cut(s) 110, 163, 308
AluI AGCT 3 cut(s) 110, 163, 308
Alw26I GTCTC 2 cut(s) 73, 372
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 218, 244
AsuII TTCGAA 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 300
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 73, 372
BglII AGATCT 1 cut(s) 79
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 119, 363
BmsI GCATC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 344
Bse118I RCCGGY 1 cut(s) 268
Bse21I CCTNAGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 264, 344
BseMII CTCAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 97
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 268
BsiSI CCGG 4 cut(s) 72, 269, 345, 359
BslI CCNNNNNNNGG 2 cut(s) 264, 344
BsmAI GTCTC 2 cut(s) 73, 372
BsmBI CGTCTC 2 cut(s) 73, 372
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 79, 183
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 119, 363
BspT104I TTCGAA 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 268
BssMI GATC 2 cut(s) 79, 183
Bst4CI ACNGT 3 cut(s) 34, 67, 206
Bst6I CTCTTC 3 cut(s) 29, 197, 358
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 266, 270
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 2 cut(s) 82, 186
BstMAI GTCTC 2 cut(s) 73, 372
BstMBI GATC 2 cut(s) 79, 183
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 287
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 266, 270
Cfr10I RCCGGY 1 cut(s) 268
CviAII CATG 1 cut(s) 171
CviJI RGCY 8 cut(s) 5, 110, 118, 163, 268, 308, 324, 362
CviKI_1 RGCY 8 cut(s) 5, 110, 118, 163, 268, 308, 324, 362
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 81, 185
DpnII GATC 2 cut(s) 79, 183
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 3 cut(s) 29, 197, 358
EarI CTCTTC 3 cut(s) 29, 197, 358
Eco81I CCTNAGG 1 cut(s) 300
Esp3I CGTCTC 2 cut(s) 73, 372
FaeI CATG 1 cut(s) 174
FaiI YATR 3 cut(s) 107, 157, 172
FatI CATG 1 cut(s) 170
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 268
HapII CCGG 4 cut(s) 72, 269, 345, 359
Hin1II CATG 1 cut(s) 174
HinfI GANTC 4 cut(s) 92, 236, 334, 350
HpaII CCGG 4 cut(s) 72, 269, 345, 359
HphI GGTGA 2 cut(s) 218, 244
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 290, 333
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 3 cut(s) 34, 67, 206
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 1 cut(s) 174
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
Kzo9I GATC 2 cut(s) 79, 183
LmnI GCTCC 2 cut(s) 123, 367
LpnPI CCDG 8 cut(s) 85, 99, 130, 250, 282, 312, 358, 372
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 81, 185
MboI GATC 2 cut(s) 79, 183
MboII GAAGA 4 cut(s) 16, 184, 187, 345
MfeI CAATTG 1 cut(s) 259
MflI RGATCY 1 cut(s) 79
MluCI AATT 1 cut(s) 259
MlyI GAGTC 2 cut(s) 101, 344
MnlI CCTC 6 cut(s) 32, 62, 108, 122, 209, 295
MroNI GCCGGC 1 cut(s) 268
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 4 cut(s) 72, 269, 345, 359
MunI CAATTG 1 cut(s) 259
Mva1269I GAATGC 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 274
NaeI GCCGGC 1 cut(s) 270
NdeII GATC 2 cut(s) 79, 183
NgoMIV GCCGGC 1 cut(s) 268
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 2 cut(s) 119, 363
NmuCI GTSAC 1 cut(s) 34
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 236, 334
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 100, 344
PpsI GAGTC 2 cut(s) 100, 344
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 119, 363
PsrI GAACNNNNNNTAC 2 cut(s) 140, 172
PsuI RGATCY 1 cut(s) 79
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 79, 183
SchI GAGTC 2 cut(s) 101, 344
SetI ASST 3 cut(s) 112, 165, 310
SfaNI GCATC 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 8
Sse9I AATT 1 cut(s) 259
SsiI CCGC 1 cut(s) 89
TaaI ACNGT 3 cut(s) 34, 67, 206
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 259
TfiI GAWTC 2 cut(s) 236, 334
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 34
TspGWI ACGGA 2 cut(s) 229, 354
Van91I CCANNNNNTGG 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.