Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008373

Physical Location & Seq

Genomic Coordinates Forward (+)

27383498 .. 27383899

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTTTCAAGAATTTGGTTTTCCTTTCCATAATGATACTGATCGCGTCCATCATGAGTGCAAGCAATGCAGCAACTGCTGCTACTAGGAAACTTTCTGCAGGGATCAAAACGAGCGGTGAAGGCGAAGGCGAAGGCGGCCTAGTGGAATGCGGAAATGCGTTGGTGGAAGTGAAATCTTGCTCGCAAGAGATTGTTGTGTATTTCCTTAATGGCAGGACTGATATTGGCCCGGACTGTTGCAAAGCCATCACCACCATTACGCGTCGCTGCTGGCCTGCAATGCTTACTTCCCTTGGCTTCACTGCAGAACAAGGTGACATCTTACGAGGCTACTGCGATGCCGAGGCTACTACTGTGATTACTACTACTGCTCCTGCTGCAGCGCCACTTGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

134

Amino Acids

13.82

Weight (kDa)

5.05

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	50 - 114	3.9e-18	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21740 AT2G21750 AT4G39340
fragaria_vesca	FvH4_1g23830 FvH4_4g25660
malus_domestica	MD01G1001000.v1.1 MD15G1340900.v1.1
prunus_persica	Prupe.6G161600_v2.0.a1
pyrus_communis	pycom15g30040
rosa_chinensis	RchiOBHm_Chr2g0119721 RchiOBHm_Chr2g0119751
rosa_laevigata	RLG00000018487 RLG00000018490
rosa_multiflora	Rmu_sc0001501.1_g000060 Rmu_sc0001501.1_g000085
rosa_roxburghii	Rroxscaffold_2G00124100 Rroxscaffold_2G00124190
rosa_rugosa	Rorug02G0223000 Rorug02G0223400
rosa_samantha	Rh2BG292600 Rh2DG287500
rosa_wichuraiana	Rw2G022440 Rw2G022470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	2 cut(s)	47, 265
AciI	CCGC	3 cut(s)	117, 138, 153
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	10
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	3 cut(s)	139, 229, 275
ApeKI	GCWGC	5 cut(s)	71, 80, 270, 380, 383
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	131, 244, 329
BbvI	GCAGC	5 cut(s)	67, 83, 257, 367, 395
BccI	CCATC	2 cut(s)	59, 257
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	2 cut(s)	87, 143
BfmI	CTRYAG	3 cut(s)	99, 306, 381
BfoI	RGCGCY	1 cut(s)	389
BisI	GCNGC	6 cut(s)	72, 81, 139, 271, 381, 384
BlsI	GCNGC	6 cut(s)	73, 82, 140, 272, 382, 385
Bme1390I	CCNGG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	295, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bse3DI	GCAATG	2 cut(s)	73, 288
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	295, 345
BseJI	GATNNNNATC	1 cut(s)	41
BseMI	GCAATG	2 cut(s)	73, 288
BseXI	GCAGC	5 cut(s)	67, 83, 257, 367, 395
Bsh1236I	CGCG	2 cut(s)	47, 265
BshFI	GGCC	3 cut(s)	141, 231, 277
BsiSI	CCGG	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	141, 231, 277
Bsp143I	GATC	2 cut(s)	42, 105
BspACI	CCGC	3 cut(s)	117, 138, 153
BspANI	GGCC	3 cut(s)	141, 231, 277
BspFNI	CGCG	2 cut(s)	47, 265
BspHI	TCATGA	1 cut(s)	54
BspMAI	CTGCAG	3 cut(s)	103, 310, 385
BspPI	GGATC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	73, 288
BssECI	CCNNGG	2 cut(s)	295, 345
BssMI	GATC	2 cut(s)	42, 105
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	239, 358
BstAPI	GCANNNNNTGC	3 cut(s)	68, 77, 80
BstC8I	GCNNGC	4 cut(s)	64, 185, 275, 279
BstFNI	CGCG	2 cut(s)	47, 265
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	45, 108
BstMBI	GATC	2 cut(s)	42, 105
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 77, 80, 123, 138, 283, 380
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	3 cut(s)	99, 306, 381
BstUI	CGCG	2 cut(s)	47, 265
BstV1I	GCAGC	5 cut(s)	67, 83, 257, 367, 395
BsuRI	GGCC	3 cut(s)	141, 231, 277
BtgZI	GCGATG	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	4 cut(s)	64, 185, 275, 279
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	2 cut(s)	36, 254
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	8 cut(s)	5, 141, 231, 248, 277, 300, 333, 350
CviKI_1	RGCY	8 cut(s)	5, 141, 231, 248, 277, 300, 333, 350
DpnI	GATC	2 cut(s)	44, 107
DpnII	GATC	2 cut(s)	42, 105
Eco130I	CCWWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	32, 56
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	6 cut(s)	72, 81, 139, 271, 381, 384
Fsp4HI	GCNGC	6 cut(s)	72, 81, 139, 271, 381, 384
FspBI	CTAG	2 cut(s)	87, 143
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	6 cut(s)	72, 81, 139, 271, 381, 384
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	3 cut(s)	141, 231, 277
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	2 cut(s)	36, 254
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	3 cut(s)	131, 244, 329
Hpy188III	TCNNGA	2 cut(s)	10, 55
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	3 cut(s)	116, 122, 128
HpyCH4III	ACNGT	2 cut(s)	239, 358
HpyCH4V	TGCA	7 cut(s)	62, 71, 101, 243, 281, 308, 383
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 77, 80, 123, 138, 283, 380
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	42, 105
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	6 cut(s)	87, 202, 246, 259, 291, 390
Lsp1109I	GCAGC	5 cut(s)	67, 83, 257, 367, 395
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	87, 143
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	44, 107
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	2 cut(s)	42, 105
MluCI	AATT	1 cut(s)	13
MluI	ACGCGT	1 cut(s)	263
MnlI	CCTC	2 cut(s)	323, 340
MseI	TTAA	2 cut(s)	210, 400
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	155
MvnI	CGCG	2 cut(s)	47, 265
MwoI	GCNNNNNNNGC	7 cut(s)	68, 77, 80, 123, 138, 283, 380
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	42, 105
NlaIII	CATG	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	317
PagI	TCATGA	1 cut(s)	54
PctI	GAATGC	1 cut(s)	155
PkrI	GCNGC	6 cut(s)	73, 82, 140, 272, 382, 385
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	3 cut(s)	103, 310, 385
PstNI	CAGNNNCTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	210, 400
SatI	GCNGC	6 cut(s)	72, 81, 139, 271, 381, 384
Sau3AI	GATC	2 cut(s)	42, 105
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	1 cut(s)	319
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	3 cut(s)	99, 306, 381
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	3 cut(s)	117, 138, 153
SspMI	CTAG	2 cut(s)	87, 143
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	239, 358
TasI	AATT	1 cut(s)	13
TauI	GCSGC	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	210, 400
Tru9I	TTAA	2 cut(s)	210, 400
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	5 cut(s)	71, 80, 270, 380, 383
Tsp45I	GTSAC	1 cut(s)	317
TspRI	CASTG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	13
XspI	CTAG	2 cut(s)	87, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.