Rorug02G0223400

Egg cell-secreted protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
21654248 .. 21659331
5084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0223400.1

Sequence Viewer

Length: 645 bp
ATGGAATTTGTTCTACTGTGGCCGAGTGTCATGATGTGGTGCATGTTAGGATTTGTGAAAGCTTGTCTGTACCTGCGTATAGCTTCTGGTCTTCTAGTACTAGAAGCCAAGCTGTTTCTGCATTTGGAGGATTTGCTTTATGTGGTTAAAGCCAAACCCCATGATCACAGGATGATGTGTGACTCACCGATTGTGCAACCTAAGTTGAGCGAAAATGATTCTCTCTATAGTCATTTGCAGGTTAAAGATTTAACTGAGCAGTTTCCAGCCGCTACACGCCTTGCTTTGGTACTGAAACAGTTCTTGGCAGATCGTAGTCTGGATCAGTCTTATTCTGGTGGCTTGAGTTCCTACTGTTTGGTACTACTAATTGTGCGTTTTCCCCAGCATGAGTGTCTTCTTGGCCAACCTATCAACCAAGACTTCGGAGACCTTCTGATGAATTTTCTTTATTTTTTTGGGAATGTTTTTGATCCTCGGAAAATGCGTATTTCCGTACAGGGAAATGGAGTTTATATAAAGAGGGAAAGAGGTTGCAGGTTTTGCACCGCTGGGCTTCCTAGTGATGTTGTTGAAGTTGGAGAAATGTCTTTCCATCTTCATAATTTTCTTTTGCTCTCAAGAAGTGAGTTCATGGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

214

Amino Acids

24.55

Weight (kDa)

6.37

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 81, 229, 528
AciI CCGC 2 cut(s) 270, 549
AclWI GGATC 2 cut(s) 330, 467
AcoI YGGCCR 2 cut(s) 20, 403
AcsI RAATTY 2 cut(s) 5, 442
AfaI GTAC 5 cut(s) 71, 99, 291, 363, 498
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 575
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 3 cut(s) 62, 83, 112
AluI AGCT 3 cut(s) 62, 83, 112
Alw26I GTCTC 1 cut(s) 423
AlwI GGATC 2 cut(s) 330, 467
AoxI GGCC 2 cut(s) 20, 403
ApoI RAATTY 2 cut(s) 5, 442
Asp700I GAANNNNTTC 2 cut(s) 9, 299
AsuHPI GGTGA 1 cut(s) 177
BalI TGGCCA 1 cut(s) 405
BbsI GAAGAC 2 cut(s) 83, 389
BccI CCATC 1 cut(s) 603
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 3 cut(s) 95, 101, 561
BfmI CTRYAG 1 cut(s) 226
BfuAI ACCTGC 3 cut(s) 81, 229, 528
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmcAI AGTACT 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 83, 389
BpuEI CTTGAG 2 cut(s) 364, 604
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 476
Bsc4I CCNNNNNNNGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 476
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 246
BseYI CCCAGC 2 cut(s) 384, 551
BshFI GGCC 2 cut(s) 22, 405
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 423
BsnI GGCC 2 cut(s) 22, 405
Bso31I GGTCTC 1 cut(s) 423
Bsp143I GATC 4 cut(s) 163, 310, 322, 472
BspACI CCGC 2 cut(s) 270, 549
BspANI GGCC 2 cut(s) 22, 405
BspCNI CTCAG 1 cut(s) 247
BspHI TCATGA 1 cut(s) 30
BspMI ACCTGC 3 cut(s) 81, 229, 528
BspPI GGATC 2 cut(s) 330, 467
BspTNI GGTCTC 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 4 cut(s) 163, 310, 322, 472
Bst4CI ACNGT 3 cut(s) 18, 300, 356
BstAPI GCANNNNNTGC 1 cut(s) 543
BstDEI CTNAG 2 cut(s) 201, 255
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 4 cut(s) 166, 313, 325, 475
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 4 cut(s) 163, 310, 322, 472
BstMWI GCNNNNNNNGC 2 cut(s) 118, 543
BstNSI RCATGY 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 226
BstV2I GAAGAC 2 cut(s) 83, 389
BsuRI GGCC 2 cut(s) 22, 405
BtsCI GGATG 1 cut(s) 177
BveI ACCTGC 3 cut(s) 81, 229, 528
CciI TCATGA 1 cut(s) 30
Csp6I GTAC 5 cut(s) 70, 98, 290, 362, 497
CviAII CATG 5 cut(s) 31, 43, 161, 389, 634
CviQI GTAC 5 cut(s) 70, 98, 290, 362, 497
DdeI CTNAG 2 cut(s) 201, 255
DpnI GATC 4 cut(s) 165, 312, 324, 474
DpnII GATC 4 cut(s) 163, 310, 322, 472
EaeI YGGCCR 2 cut(s) 20, 403
Eco31I GGTCTC 1 cut(s) 423
FaeI CATG 5 cut(s) 34, 46, 164, 392, 637
FatI CATG 5 cut(s) 30, 42, 160, 388, 633
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 3 cut(s) 95, 101, 561
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 2 cut(s) 388, 555
HaeIII GGCC 2 cut(s) 22, 405
Hin1II CATG 5 cut(s) 34, 46, 164, 392, 637
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 2 cut(s) 182, 218
HphI GGTGA 1 cut(s) 177
Hpy188I TCNGA 3 cut(s) 428, 438, 480
Hpy188III TCNNGA 3 cut(s) 31, 320, 621
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 3 cut(s) 18, 300, 356
HpyCH4V TGCA 6 cut(s) 42, 121, 196, 238, 537, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 543
HpyF3I CTNAG 2 cut(s) 201, 255
Hsp92II CATG 5 cut(s) 34, 46, 164, 392, 637
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 4 cut(s) 163, 310, 322, 472
MaeI CTAG 3 cut(s) 95, 101, 561
MaeIII GTNAC 1 cut(s) 179
MalI GATC 4 cut(s) 165, 312, 324, 474
MboI GATC 4 cut(s) 163, 310, 322, 472
MboII GAAGA 3 cut(s) 83, 389, 590
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 4 cut(s) 5, 369, 442, 604
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 4 cut(s) 121, 486, 516, 524
Mox20I TGGCCA 1 cut(s) 405
MroXI GAANNNNTTC 2 cut(s) 9, 299
MscI TGGCCA 1 cut(s) 405
MseI TTAA 3 cut(s) 147, 243, 251
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 551
MwoI GCNNNNNNNGC 2 cut(s) 118, 543
NdeII GATC 4 cut(s) 163, 310, 322, 472
NlaIII CATG 5 cut(s) 34, 46, 164, 392, 637
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 46
PagI TCATGA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 484
PdmI GAANNNNTTC 2 cut(s) 9, 299
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspFI CCCAGC 2 cut(s) 384, 551
RsaI GTAC 5 cut(s) 71, 99, 291, 363, 498
RsaNI GTAC 5 cut(s) 70, 98, 290, 362, 497
SaqAI TTAA 3 cut(s) 147, 243, 251
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 4 cut(s) 163, 310, 322, 472
ScaI AGTACT 1 cut(s) 99
SchI GAGTC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 343, 619
SmoI CTYRAG 2 cut(s) 343, 619
Sse9I AATT 4 cut(s) 5, 369, 442, 604
SsiI CCGC 2 cut(s) 270, 549
SspMI CTAG 3 cut(s) 95, 101, 561
TaaI ACNGT 3 cut(s) 18, 300, 356
TasI AATT 4 cut(s) 5, 369, 442, 604
TatI WGTACW 1 cut(s) 97
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 3 cut(s) 147, 243, 251
Tru9I TTAA 3 cut(s) 147, 243, 251
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 455, 590, 622
TspGWI ACGGA 1 cut(s) 484
XapI RAATTY 2 cut(s) 5, 442
XceI RCATGY 1 cut(s) 46
XmnI GAANNNNTTC 2 cut(s) 9, 299
XspI CTAG 3 cut(s) 95, 101, 561
ZrmI AGTACT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.