FvH4_1g23830

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008373
Physical Location & Seq
Reverse (-)
15703130 .. 15703837
708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23830.t1

Sequence Viewer

Length: 429 bp
ATGGCTTTCAAGAATTTGGTTTTCCTTTCCATGATGACACTGATCGCATCCCTCATCATGAGTGCAAGCAATGCAACTGCTACTAGAAAACTTTCTGCAGGGATCAAAACGAGCGGTGAAGGAGAAGGGGGCCTAGTGGGATGCGGAAATGCGCTGGTGGAGGTGAAATCTTGCTCACAAGAGATTGTTGTGTATTTCCTTAATGGGAAGGCTGATATTGGCACGGACTGTTGCAAAGCCATCGCCACCGTTACGCGTCATTGCTGGCCTACAATGCTTACTTCCCTTGGCTTCACTGAAGAACAAGGTGACATCTTACGAGGCTACTGCGATGCTGCGGCTGCTGTGATTACTACTACTGCTCCTGTTGCTGCGCCACTTGCTCCTAAAACTTCTCTTACTACACTAATTGCTCCAGCTCTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

143

Amino Acids

14.66

Weight (kDa)

6.54

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 48 - 111 1e-16 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AccII CGCG 1 cut(s) 256
AciI CCGC 3 cut(s) 114, 144, 338
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 318
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
AlwI GGATC 1 cut(s) 110
AoxI GGCC 2 cut(s) 130, 266
ApeKI GCWGC 3 cut(s) 335, 341, 371
ApoI RAATTY 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 91
AspLEI GCGC 2 cut(s) 154, 376
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 128, 175, 320
BbvI GCAGC 3 cut(s) 322, 328, 358
BccI CCATC 1 cut(s) 248
BcgI CGANNNNNNTGC 4 cut(s) 223, 257, 309, 343
BfaI CTAG 2 cut(s) 84, 134
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 4 cut(s) 336, 339, 342, 372
BlsI GCNGC 4 cut(s) 337, 340, 343, 373
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 131
BmsI GCATC 3 cut(s) 56, 131, 322
BpmI CTGGAG 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse3DI GCAATG 2 cut(s) 76, 259
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 47, 146
BseMI GCAATG 2 cut(s) 76, 259
BseXI GCAGC 3 cut(s) 322, 328, 358
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 132, 268
BsnI GGCC 2 cut(s) 132, 268
Bsp143I GATC 2 cut(s) 42, 102
BspACI CCGC 3 cut(s) 114, 144, 338
BspANI GGCC 2 cut(s) 132, 268
BspFNI CGCG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 131
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 2 cut(s) 76, 259
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 2 cut(s) 42, 102
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 230, 250
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 67, 266
BstF5I GGATG 2 cut(s) 47, 146
BstFNI CGCG 1 cut(s) 256
BstHHI GCGC 2 cut(s) 154, 376
BstKTI GATC 2 cut(s) 45, 105
BstMBI GATC 2 cut(s) 42, 102
BstMWI GCNNNNNNNGC 5 cut(s) 71, 274, 341, 368, 380
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 322, 328, 358
BsuRI GGCC 2 cut(s) 132, 268
BtgZI GCGATG 2 cut(s) 226, 345
BtsCI GGATG 2 cut(s) 47, 146
BtsIMutI CAGTG 2 cut(s) 38, 294
Cac8I GCNNGC 2 cut(s) 67, 266
CciI TCATGA 1 cut(s) 57
CfoI GCGC 2 cut(s) 154, 376
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 245
CviAII CATG 3 cut(s) 31, 58, 424
CviJI RGCY 9 cut(s) 5, 132, 212, 239, 268, 291, 324, 341, 419
CviKI_1 RGCY 9 cut(s) 5, 132, 212, 239, 268, 291, 324, 341, 419
DpnI GATC 2 cut(s) 44, 104
DpnII GATC 2 cut(s) 42, 102
Eco130I CCWWGG 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 3 cut(s) 34, 61, 427
FaiI YATR 3 cut(s) 32, 59, 425
FatI CATG 3 cut(s) 30, 57, 423
Fnu4HI GCNGC 4 cut(s) 336, 339, 342, 372
FokI GGATG 2 cut(s) 34, 153
Fsp4HI GCNGC 4 cut(s) 336, 339, 342, 372
FspBI CTAG 2 cut(s) 84, 134
GlaI GCGC 2 cut(s) 153, 375
GluI GCNGC 4 cut(s) 336, 339, 342, 372
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 132, 268
HgaI GACGC 1 cut(s) 245
HhaI GCGC 2 cut(s) 154, 376
Hin1II CATG 3 cut(s) 34, 61, 427
Hin6I GCGC 2 cut(s) 152, 374
HinP1I GCGC 2 cut(s) 152, 374
HphI GGTGA 3 cut(s) 128, 175, 320
Hpy188III TCNNGA 2 cut(s) 10, 58
HpyAV CCTTC 3 cut(s) 113, 119, 202
HpyCH4III ACNGT 2 cut(s) 230, 250
HpyCH4V TGCA 4 cut(s) 65, 74, 98, 234
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 274, 341, 368, 380
Hsp92II CATG 3 cut(s) 34, 61, 427
HspAI GCGC 2 cut(s) 152, 374
Kzo9I GATC 2 cut(s) 42, 102
LmnI GCTCC 3 cut(s) 367, 388, 418
LpnPI CCDG 4 cut(s) 84, 140, 250, 378
Lsp1109I GCAGC 3 cut(s) 322, 328, 358
LweI GCATC 3 cut(s) 56, 131, 322
MaeI CTAG 2 cut(s) 84, 134
MaeIII GTNAC 2 cut(s) 250, 308
MalI GATC 2 cut(s) 44, 104
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 42, 102
MboII GAAGA 1 cut(s) 311
MluCI AATT 2 cut(s) 13, 408
MluI ACGCGT 1 cut(s) 254
MnlI CCTC 3 cut(s) 62, 154, 314
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 1 cut(s) 201
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 5 cut(s) 71, 274, 341, 368, 380
NdeII GATC 2 cut(s) 42, 102
NlaIII CATG 3 cut(s) 34, 61, 427
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 308
PagI TCATGA 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 91
PkrI GCNGC 4 cut(s) 337, 340, 343, 373
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 100
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 4 cut(s) 336, 339, 342, 372
Sau3AI GATC 2 cut(s) 42, 102
Sau96I GGNCC 1 cut(s) 130
SetI ASST 3 cut(s) 165, 310, 421
SfaNI GCATC 3 cut(s) 56, 131, 322
SfcI CTRYAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 13, 408
SsiI CCGC 3 cut(s) 114, 144, 338
SspMI CTAG 2 cut(s) 84, 134
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 230, 250
TasI AATT 2 cut(s) 13, 408
TauI GCSGC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 45, 301
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 335, 341, 371
Tsp45I GTSAC 1 cut(s) 308
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 2 cut(s) 45, 301
XapI RAATTY 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 2 cut(s) 84, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.