Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009888

Physical Location & Seq

Genomic Coordinates Reverse (-)

9834766 .. 9836309

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23096.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAGATCATATGGCAAAGAGAAGAAGTTAGTGTTTCCGTACGTTTTCATTGCGTGTTGCTTCTTCTTGGCCATCTTCGGTTTCTGTTTCTTCAATCTTTTCTCTCAGGGAATTAGTTTCAGTGAGATTCCGACAACAAGAAGATCTGTTAACGATGAAACTGATTCTTTGGATCATGGTTCTTCTGTCTCTAACATTCCTTTTCATGGTTTAAGCTGGAATCCTCGAGTTTTTTACTTGCCGAATTTCGCAACGAAACAACAATGTGAAGCCGTTATCGATATGGCAAAGCCTAAGCTTAAGCCTTCTACGCTTGCTTTAAGGAAAGGTGAAACCGCAGAAACCACTCAAAACTACCGGAGTCTTCATCAGCACACCGATGAAGACGAATCCGGGGTTTTAGCTGCCATCGAAGAGAAAATAGCTTTAGCCACAAGATTCCCCAAAGATTATTACGAATCATTCAACATCTTGAGGTATCAGCTTGGCCAGAAGTATGATTCACATTATGATGCTTTCCATTCAGCAGAGTATGGTCCCCTAATAAGCCAAAGGGTCGTGACTTTCCTATTGTTCTTATCGAGTGTCGAAGAAGGTGGAGAGACGATGTTCCCATTCGAGAATGGGAGAAATATGAATGGAAGATATGATTATGAGAAGTGTGTTGGTCTGAAAGTAAAGCCGCGACAAGGAGACGCCATTTTCTTCTACAATTTGTTTCCAAATGGAACGATCGATCAAACATCTCTACATGGAAGCTGTCCTGTTATCAAGGGTGAGAAATGGGTTGCCACCAAATGGATAAGAGACCAAACATATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

274

Amino Acids

31.42

Weight (kDa)

6.4

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	153 - 269	3.1e-06	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	156 - 269	2.3e-15	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23096
fragaria_vesca	FvH4_1g17210 FvH4_1g17210 FvH4_1g17210
malus_domestica	MD02G1182100.v1.1 MD15G1293300.v1.1
prunus_persica	Prupe.6G224300_v2.0.a1
pyrus_communis	pycom15g25630
rosa_chinensis	RchiOBHm_Chr2g0107361
rosa_laevigata	RLG00000017573
rosa_multiflora	Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012
rosa_roxburghii	Rroxscaffold_2G00136400
rosa_rugosa	Rorug02G0142600 Rorug03G0188400
rosa_samantha	Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400
rosa_wichuraiana	Rw2G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	798
AccII	CGCG	1 cut(s)	685
AciI	CCGC	2 cut(s)	336, 683
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	2 cut(s)	69, 487
AcsI	RAATTY	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	696
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	206, 689, 798
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	94, 466
AluBI	AGCT	6 cut(s)	216, 298, 404, 425, 484, 759
AluI	AGCT	6 cut(s)	216, 298, 404, 425, 484, 759
Alw26I	GTCTC	4 cut(s)	193, 596, 687, 801
AlwI	GGATC	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	2 cut(s)	69, 487
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	341, 788
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	536
BalI	TGGCCA	2 cut(s)	71, 489
BbsI	GAAGAC	2 cut(s)	356, 390
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	80, 416
BceAI	ACGGC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	4 cut(s)	193, 596, 687, 801
BfrI	CTTAAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	2 cut(s)	405, 683
BlsI	GCNGC	2 cut(s)	406, 684
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	2 cut(s)	356, 390
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	394
Bsa29I	ATCGAT	2 cut(s)	279, 735
BsaHI	GRCGYC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	801
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 689, 798
Bse3DI	GCAATG	1 cut(s)	48
BseCI	ATCGAT	2 cut(s)	279, 735
BseDI	CCNNGG	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	206, 689, 798
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	685
Bsh1285I	CGRYCG	1 cut(s)	735
BshFI	GGCC	2 cut(s)	71, 489
BshVI	ATCGAT	2 cut(s)	279, 735
BsiEI	CGRYCG	1 cut(s)	735
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	358, 393
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	3 cut(s)	206, 689, 798
BsmAI	GTCTC	4 cut(s)	193, 596, 687, 801
BsmBI	CGTCTC	2 cut(s)	596, 687
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	71, 489
Bso31I	GGTCTC	1 cut(s)	801
BsoBI	CYCGRG	1 cut(s)	225
Bsp143I	GATC	5 cut(s)	5, 143, 172, 732, 736
BspACI	CCGC	2 cut(s)	336, 683
BspANI	GGCC	2 cut(s)	71, 489
BspCNI	CTCAG	1 cut(s)	118
BspDI	ATCGAT	2 cut(s)	279, 735
BspFNI	CGCG	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	538
BspPI	GGATC	1 cut(s)	180
BspTI	CTTAAG	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	801
BsrDI	GCAATG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	5 cut(s)	5, 143, 172, 732, 736
BssNI	GRCGYC	1 cut(s)	696
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	696
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	105, 294
BstFNI	CGCG	1 cut(s)	685
BstKTI	GATC	5 cut(s)	8, 146, 175, 735, 739
BstMAI	GTCTC	4 cut(s)	193, 596, 687, 801
BstMBI	GATC	5 cut(s)	5, 143, 172, 732, 736
BstMCI	CGRYCG	1 cut(s)	735
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	685
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	2 cut(s)	356, 390
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
Bsu15I	ATCGAT	2 cut(s)	279, 735
BsuRI	GGCC	2 cut(s)	71, 489
BsuTUI	ATCGAT	2 cut(s)	279, 735
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	536
ClaI	ATCGAT	2 cut(s)	279, 735
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	3 cut(s)	176, 206, 752
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	105, 294
DpnI	GATC	5 cut(s)	7, 145, 174, 734, 738
DpnII	GATC	5 cut(s)	5, 143, 172, 732, 736
EaeI	YGGCCR	2 cut(s)	69, 487
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	801
Eco47I	GGWCC	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	225
Esp3I	CGTCTC	2 cut(s)	596, 687
FaeI	CATG	3 cut(s)	179, 209, 755
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	3 cut(s)	175, 205, 751
FauNDI	CATATG	2 cut(s)	10, 817
Fnu4HI	GCNGC	2 cut(s)	405, 683
Fsp4HI	GCNGC	2 cut(s)	405, 683
GluI	GCNGC	2 cut(s)	405, 683
HaeIII	GGCC	2 cut(s)	71, 489
HapII	CCGG	2 cut(s)	358, 393
HgaI	GACGC	1 cut(s)	704
Hin1I	GRCGYC	1 cut(s)	696
Hin1II	CATG	3 cut(s)	179, 209, 755
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	8 cut(s)	127, 164, 220, 361, 389, 438, 458, 500
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	358, 393
HphI	GGTGA	2 cut(s)	341, 788
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	132, 672
Hpy188III	TCNNGA	3 cut(s)	472, 559, 619
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	315, 587
HpyCH4IV	ACGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	105, 294
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	696
Hsp92II	CATG	3 cut(s)	179, 209, 755
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	5, 143, 172, 732, 736
LpnPI	CCDG	6 cut(s)	92, 202, 371, 406, 503, 777
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	502
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	5 cut(s)	7, 145, 174, 734, 738
MboI	GATC	5 cut(s)	5, 143, 172, 732, 736
MflI	RGATCY	1 cut(s)	143
MlsI	TGGCCA	2 cut(s)	71, 489
MluCI	AATT	3 cut(s)	111, 244, 712
MluNI	TGGCCA	2 cut(s)	71, 489
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	234, 468
Mox20I	TGGCCA	2 cut(s)	71, 489
MscI	TGGCCA	2 cut(s)	71, 489
MseI	TTAA	4 cut(s)	150, 212, 300, 320
MslI	CAYNNNNRTG	2 cut(s)	378, 510
Msp20I	TGGCCA	2 cut(s)	71, 489
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	2 cut(s)	358, 393
MspR9I	CCNGG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	685
MwoI	GCNNNNNNNGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	394
NdeI	CATATG	2 cut(s)	10, 817
NdeII	GATC	5 cut(s)	5, 143, 172, 732, 736
NlaIII	CATG	3 cut(s)	179, 209, 755
NlaIV	GGNNCC	1 cut(s)	538
NmuCI	GTSAC	1 cut(s)	559
PaeR7I	CTCGAG	1 cut(s)	225
PfeI	GAWTC	7 cut(s)	127, 164, 220, 389, 438, 458, 500
Pfl23II	CGTACG	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	798
PkrI	GCNGC	2 cut(s)	406, 684
Ple19I	CGATCG	1 cut(s)	735
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	1 cut(s)	536
PspXI	VCTCGAGB	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	735
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	378, 510
SaqAI	TTAA	4 cut(s)	150, 212, 300, 320
SatI	GCNGC	2 cut(s)	405, 683
Sau3AI	GATC	5 cut(s)	5, 143, 172, 732, 736
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	502
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	378, 510
SmlI	CTYRAG	3 cut(s)	225, 299, 472
SmoI	CTYRAG	3 cut(s)	225, 299, 472
Sse9I	AATT	3 cut(s)	111, 244, 712
SsiI	CCGC	2 cut(s)	336, 683
StyD4I	CCNGG	1 cut(s)	392
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	7 cut(s)	226, 279, 411, 581, 588, 618, 735
TasI	AATT	3 cut(s)	111, 244, 712
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	7 cut(s)	127, 164, 220, 389, 438, 458, 500
Tru1I	TTAA	4 cut(s)	150, 212, 300, 320
Tru9I	TTAA	4 cut(s)	150, 212, 300, 320
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	6 cut(s)	37, 171, 194, 356, 396, 650
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	798
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.