Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009888

Physical Location & Seq

Genomic Coordinates Forward (+)

18984224 .. 18984745

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTTTCCATACGAGAGTGGCTTGAACCTGGATGGAAAACATGATTCTCAGGAATGTATGGGTTTGAGAGTGAAGCCGCGCAGAGGAGATGGCCTTCTGTTTTATTCATTGTTCCCTAATGGTTCCATTGACCCTTTATCAATACATGGGAGTTGTCCTGTAATCAAAGGCGAAAAATGGGTGGCTACCAAGTGGATGAGGGATCAAGTACAAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

73

Amino Acids

8.3

Weight (kDa)

6.07

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	21 - 67	4.3e-06	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23096
fragaria_vesca	FvH4_1g17210 FvH4_1g17210 FvH4_1g17210
malus_domestica	MD02G1182100.v1.1 MD15G1293300.v1.1
prunus_persica	Prupe.6G224300_v2.0.a1
pyrus_communis	pycom15g25630
rosa_chinensis	RchiOBHm_Chr2g0107361
rosa_laevigata	RLG00000017573
rosa_multiflora	Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012
rosa_roxburghii	Rroxscaffold_2G00136400
rosa_rugosa	Rorug02G0142600 Rorug03G0188400
rosa_samantha	Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400
rosa_wichuraiana	Rw2G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	79
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	27
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	81
BccI	CCATC	2 cut(s)	26, 83
BciT130I	CCWGG	1 cut(s)	29
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	37, 201
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	210
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	37, 201
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	37, 201
CfoI	GCGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	41, 146
CviJI	RGCY	4 cut(s)	21, 76, 93, 185
CviKI_1	RGCY	4 cut(s)	21, 76, 93, 185
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	44, 149
FaiI	YATR	4 cut(s)	10, 42, 59, 147
FatI	CATG	2 cut(s)	40, 145
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	2 cut(s)	44, 208
Fsp4HI	GCNGC	1 cut(s)	77
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	44, 149
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	44, 149
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	4 cut(s)	14, 35, 41, 171
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	77, 192, 208
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	79
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	44, 149
NlaIV	GGNNCC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	29
SetI	ASST	1 cut(s)	30
SsiI	CCGC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	27
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.