Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010952.1

Orthogroup ID

OG0009888

Physical Location & Seq

Genomic Coordinates Reverse (-)

47853 .. 50114

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010952.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgagacccaaatccctgaaagggaattggagctccaggttgaagttcaaggccaagctacgattacccaccgtcctcgttttctgctctttcttcttcctcgccggtttcttcatctcctctcttttctctcaggatgtagatggtggtggcaatacacccagaacgaggttgctggaaacagagtacgaaacgctgccgtttggggagacaggagacgagtctttaacttcaattcccttccaggtgttgagctggtatccgcgagcattatattttcctaattttgcttctgcggagcaatgtgagactataatcgatttggcaaagccggcccttaaaccctcgaccttggctttgagagagggagagactgaggagaacacaaagggaattagaacaagttctgggatgtttctttcggcttatcaagacaagtctgggactttggatgtcattgaggaaaagattgcaagagcaacgatgattcccaggacccatggagaggcattcaacgtcttgcgttatgagattgggcagaagtataattctcattatgatgcattccacccggaggaatatggtccacagacaagccaaagggttgcatcattcctgttgtatttaactgatgttgaagaaggtggggaaacaatgtttccatatgagagtggcttgaacctggatggaaaacatgattctcaggaatgtatgggtttgagagtgaagccgcgcagaggagatggccttctgttttattcattgttccctaacggttccattgatcctttatcaatacatgggagttgtcctgtaatcaaaggcgaaaaatgggtggctacaaagtggatgagggatcaagtacaagaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

291

Amino Acids

32.83

Weight (kDa)

5.55

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23096
fragaria_vesca	FvH4_1g17210 FvH4_1g17210 FvH4_1g17210
malus_domestica	MD02G1182100.v1.1 MD15G1293300.v1.1
prunus_persica	Prupe.6G224300_v2.0.a1
pyrus_communis	pycom15g25630
rosa_chinensis	RchiOBHm_Chr2g0107361
rosa_laevigata	RLG00000017573
rosa_multiflora	Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012
rosa_roxburghii	Rroxscaffold_2G00136400
rosa_rugosa	Rorug02G0142600 Rorug03G0188400
rosa_samantha	Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400
rosa_wichuraiana	Rw2G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	265, 733
AciI	CCGC	3 cut(s)	263, 296, 731
AclWI	GGATC	2 cut(s)	779, 864
AfaI	GTAC	2 cut(s)	188, 864
AfiI	CCNNNNNNNGG	5 cut(s)	21, 168, 505, 574, 737
AgsI	TTSAA	6 cut(s)	43, 49, 234, 514, 638, 679
AjnI	CCWGG	4 cut(s)	35, 243, 491, 681
AluBI	AGCT	3 cut(s)	33, 58, 255
AluI	AGCT	3 cut(s)	33, 58, 255
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	4 cut(s)	203, 210, 302, 365
AlwI	GGATC	2 cut(s)	779, 864
AoxI	GGCC	3 cut(s)	51, 333, 745
ApeKI	GCWGC	1 cut(s)	196
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	735
AspS9I	GGNCC	3 cut(s)	334, 495, 584
AsuC2I	CCSGG	1 cut(s)	572
AvaII	GGWCC	2 cut(s)	495, 584
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	3 cut(s)	137, 680, 737
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	4 cut(s)	37, 245, 493, 683
BciVI	GTATCC	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	4 cut(s)	203, 210, 302, 365
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	2 cut(s)	197, 731
BlsI	GCNGC	2 cut(s)	198, 732
Bme1390I	CCNGG	5 cut(s)	37, 245, 493, 572, 683
Bme18I	GGWCC	2 cut(s)	495, 584
BmgT120I	GGNCC	3 cut(s)	334, 495, 584
BmiI	GGNNCC	2 cut(s)	497, 778
BmrFI	CCNGG	5 cut(s)	37, 245, 493, 572, 683
BmsI	GCATC	2 cut(s)	550, 617
BpmI	CTGGAG	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	351, 491, 499
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 168, 505, 574, 737
Bse118I	RCCGGY	2 cut(s)	104, 331
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	4 cut(s)	37, 245, 493, 683
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	351, 491, 499
BseGI	GGATG	5 cut(s)	142, 417, 457, 691, 855
BseLI	CCNNNNNNNGG	5 cut(s)	21, 168, 505, 574, 737
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	3 cut(s)	146, 366, 716
BseRI	GAGGAG	3 cut(s)	109, 392, 753
BseXI	GCAGC	1 cut(s)	183
Bsh1236I	CGCG	2 cut(s)	265, 733
BshFI	GGCC	3 cut(s)	53, 335, 747
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	105, 332, 572
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	5 cut(s)	21, 168, 505, 574, 737
BsmAI	GTCTC	4 cut(s)	203, 210, 302, 365
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	2 cut(s)	509, 563
BsnI	GGCC	3 cut(s)	53, 335, 747
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	784, 856
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	3 cut(s)	263, 296, 731
BspANI	GGCC	3 cut(s)	53, 335, 747
BspCNI	CTCAG	3 cut(s)	145, 367, 715
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	2 cut(s)	265, 733
BspLI	GGNNCC	2 cut(s)	497, 778
BspPI	GGATC	2 cut(s)	779, 864
BsrDI	GCAATG	1 cut(s)	308
BsrFI	RCCGGY	2 cut(s)	104, 331
BssAI	RCCGGY	2 cut(s)	104, 331
BssECI	CCNNGG	3 cut(s)	351, 491, 499
BssMI	GATC	2 cut(s)	784, 856
BssT1I	CCWWGG	2 cut(s)	351, 499
Bst2UI	CCWGG	4 cut(s)	37, 245, 493, 683
Bst4CI	ACNGT	2 cut(s)	73, 776
BstC8I	GCNNGC	2 cut(s)	267, 333
BstDEI	CTNAG	3 cut(s)	132, 375, 702
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	5 cut(s)	142, 417, 457, 691, 855
BstFNI	CGCG	2 cut(s)	265, 733
BstHHI	GCGC	1 cut(s)	735
BstKTI	GATC	2 cut(s)	787, 859
BstMAI	GTCTC	4 cut(s)	203, 210, 302, 365
BstMBI	GATC	2 cut(s)	784, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	4 cut(s)	37, 245, 493, 683
BstSCI	CCNGG	5 cut(s)	35, 243, 491, 570, 681
BstUI	CGCG	2 cut(s)	265, 733
BstV1I	GCAGC	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	53, 335, 747
BsuTUI	ATCGAT	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	5 cut(s)	142, 417, 457, 691, 855
Cac8I	GCNNGC	2 cut(s)	267, 333
CfoI	GCGC	1 cut(s)	735
Cfr10I	RCCGGY	2 cut(s)	104, 331
Cfr13I	GGNCC	3 cut(s)	334, 495, 584
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	187, 863
CviAII	CATG	3 cut(s)	500, 695, 800
CviQI	GTAC	2 cut(s)	187, 863
DdeI	CTNAG	3 cut(s)	132, 375, 702
DpnI	GATC	2 cut(s)	786, 858
DpnII	GATC	2 cut(s)	784, 856
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	351, 499
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	495, 584
Eco53kI	GAGCTC	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	495
EcoRII	CCWGG	4 cut(s)	35, 243, 491, 681
EcoT14I	CCWWGG	2 cut(s)	351, 499
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	2 cut(s)	351, 499
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	3 cut(s)	503, 698, 803
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	3 cut(s)	499, 694, 799
FauNDI	CATATG	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	197, 731
FokI	GGATG	5 cut(s)	149, 424, 464, 698, 862
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	197, 731
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	2 cut(s)	197, 731
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	3 cut(s)	53, 335, 747
HapII	CCGG	3 cut(s)	105, 332, 572
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	3 cut(s)	503, 698, 803
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HinfI	GANTC	3 cut(s)	221, 487, 698
HpaII	CCGG	3 cut(s)	105, 332, 572
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188III	TCNNGA	3 cut(s)	134, 431, 704
Hpy8I	GTNNAC	1 cut(s)	587
HpyAV	CCTTC	3 cut(s)	250, 635, 758
HpyCH4III	ACNGT	2 cut(s)	73, 776
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	3 cut(s)	473, 563, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	132, 375, 702
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	503, 698, 803
HspAI	GCGC	1 cut(s)	733
KroI	GCCGGC	1 cut(s)	331
KroNI	GCCGGC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	784, 856
LmnI	GCTCC	3 cut(s)	30, 38, 298
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	2 cut(s)	550, 617
MaeII	ACGT	1 cut(s)	516
MalI	GATC	2 cut(s)	786, 858
MboI	GATC	2 cut(s)	784, 856
MboII	GAAGA	4 cut(s)	85, 88, 103, 650
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	5 cut(s)	25, 234, 283, 393, 547
MlyI	GAGTC	1 cut(s)	230
Mph1103I	ATGCAT	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	3 cut(s)	227, 339, 626
MslI	CAYNNNNRTG	1 cut(s)	558
MspI	CCGG	3 cut(s)	105, 332, 572
MspR9I	CCNGG	5 cut(s)	37, 245, 493, 572, 683
Mva1269I	GAATGC	2 cut(s)	509, 563
MvaI	CCWGG	4 cut(s)	37, 245, 493, 683
MvnI	CGCG	2 cut(s)	265, 733
MwoI	GCNNNNNNNGC	1 cut(s)	332
NaeI	GCCGGC	1 cut(s)	333
NciI	CCSGG	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	499
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	2 cut(s)	784, 856
NgoMIV	GCCGGC	1 cut(s)	331
NlaIII	CATG	3 cut(s)	503, 698, 803
NlaIV	GGNNCC	2 cut(s)	497, 778
NsiI	ATGCAT	1 cut(s)	565
PctI	GAATGC	2 cut(s)	509, 563
PdiI	GCCGGC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	487, 698
PkrI	GCNGC	2 cut(s)	198, 732
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	4 cut(s)	35, 243, 491, 681
PspGI	CCWGG	4 cut(s)	35, 243, 491, 681
PspN4I	GGNNCC	2 cut(s)	497, 778
PspPI	GGNCC	3 cut(s)	334, 495, 584
PspPPI	RGGWCCY	1 cut(s)	495
RsaI	GTAC	2 cut(s)	188, 864
RsaNI	GTAC	2 cut(s)	187, 863
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	227, 339, 626
SatI	GCNGC	2 cut(s)	197, 731
Sau3AI	GATC	2 cut(s)	784, 856
Sau96I	GGNCC	3 cut(s)	334, 495, 584
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	5 cut(s)	37, 245, 493, 572, 683
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	2 cut(s)	550, 617
SinI	GGWCC	2 cut(s)	495, 584
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	5 cut(s)	25, 234, 283, 393, 547
SsiI	CCGC	3 cut(s)	263, 296, 731
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	5 cut(s)	35, 243, 491, 570, 681
StyI	CCWWGG	2 cut(s)	351, 499
TaaI	ACNGT	2 cut(s)	73, 776
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	2 cut(s)	318, 347
TasI	AATT	5 cut(s)	25, 234, 283, 393, 547
TatI	WGTACW	1 cut(s)	862
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	2 cut(s)	487, 698
Tru1I	TTAA	3 cut(s)	227, 339, 626
Tru9I	TTAA	3 cut(s)	227, 339, 626
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	103, 750
VpaK11BI	GGWCC	2 cut(s)	495, 584
XmnI	GAANNNNTTC	1 cut(s)	403
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.