Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009888

Physical Location & Seq

Genomic Coordinates Forward (+)

18448018 .. 18451291

Gene Structure 3274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGAATCGACCCAATAATGAGACCCAAATCCCTGAAAGGGAATTGGAGCTCCAGGTTGAAGTTCAAGGCCAAGCTACGATTACCCACCGTCCTCGTTTTCTGCTCTTTCTTCTTCCTCGTCGGTTTCTTCATCTCCTCTCTTTTCTCTCAGGATGTAGATGGTGGTGGCAATACACCCAGAACGAGGTTGCTGGAAACAGAGTACGAAACGCTGCCGTTTGGGGAGACAGGAGACGAGTCTTTAACTTCAATTCCCTTCCAGGTGTTGAGCTGGTATCCGCGAGCATTATATTTTCCTAATTTTGCTTCTGCGGAGCAATGTGAGACTATAATCGATTTGGCAAAGCCGGCCCTTAAACCCTCGACCTTGGCTTTGAGAGAGGGAGAGACTGAGGAGAACACAAAGGGAATTAGAACAAGTTCTGGGATGTTTCTTTCGGCTTATCAAGACAAGTCTGGGACTTTGGATGTCATTGAGGAAAAGATTGCAAGAGCAACAATGATTCCCAGGACCCATGGAGAGGCATTCAACGTCTTGTGTTATGAGATTGGGCAGAAGTATAATTCTCATTATGATGCATTCCACCCGGAGGAATATGGTCCACAGACAAGCCAAAGGGTTGCATCATTCCTGTTGTATTTAACTGATGTTGAAGAAGGCGGGGAAACAATGTTTCCATACGAGGCAAGATTCTTATTTTCTCTTTCTTTCTTTCAATGGCTCTTTTTGGTTCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

247

Amino Acids

28.21

Weight (kDa)

5.24

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	178 - 226	8.9e-07	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23096
fragaria_vesca	FvH4_1g17210 FvH4_1g17210 FvH4_1g17210
malus_domestica	MD02G1182100.v1.1 MD15G1293300.v1.1
prunus_persica	Prupe.6G224300_v2.0.a1
pyrus_communis	pycom15g25630
rosa_chinensis	RchiOBHm_Chr2g0107361
rosa_laevigata	RLG00000017573
rosa_multiflora	Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012
rosa_roxburghii	Rroxscaffold_2G00136400
rosa_rugosa	Rorug02G0142600 Rorug03G0188400
rosa_samantha	Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400
rosa_wichuraiana	Rw2G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	283
AciI	CCGC	3 cut(s)	281, 314, 663
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	4 cut(s)	39, 186, 523, 592
AgsI	TTSAA	6 cut(s)	61, 67, 252, 532, 656, 719
AjnI	CCWGG	3 cut(s)	53, 261, 509
AluBI	AGCT	3 cut(s)	51, 76, 273
AluI	AGCT	3 cut(s)	51, 76, 273
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	5 cut(s)	16, 221, 228, 320, 383
AoxI	GGCC	2 cut(s)	69, 351
ApeKI	GCWGC	1 cut(s)	214
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
Asp700I	GAANNNNTTC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	352, 513, 602
AsuC2I	CCSGG	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	513, 602
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	3 cut(s)	55, 263, 511
BciVI	GTATCC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	5 cut(s)	16, 221, 228, 320, 383
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	4 cut(s)	55, 263, 511, 590
Bme18I	GGWCC	2 cut(s)	513, 602
BmgT120I	GGNCC	3 cut(s)	352, 513, 602
BmiI	GGNNCC	2 cut(s)	515, 735
BmrFI	CCNGG	4 cut(s)	55, 263, 511, 590
BmsI	GCATC	2 cut(s)	568, 635
BpmI	CTGGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	4 cut(s)	369, 509, 517, 737
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 186, 523, 592
Bse118I	RCCGGY	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	3 cut(s)	55, 263, 511
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	4 cut(s)	369, 509, 517, 737
BseGI	GGATG	3 cut(s)	160, 435, 475
BseLI	CCNNNNNNNGG	4 cut(s)	39, 186, 523, 592
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	164, 384
BseRI	GAGGAG	2 cut(s)	127, 410
BseXI	GCAGC	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	2 cut(s)	71, 353
BshVI	ATCGAT	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	350, 590
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	4 cut(s)	39, 186, 523, 592
BsmAI	GTCTC	5 cut(s)	16, 221, 228, 320, 383
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	2 cut(s)	527, 581
BsnI	GGCC	2 cut(s)	71, 353
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	3 cut(s)	281, 314, 663
BspANI	GGCC	2 cut(s)	71, 353
BspCNI	CTCAG	2 cut(s)	163, 385
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	515, 735
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	4 cut(s)	369, 509, 517, 737
BssT1I	CCWWGG	3 cut(s)	369, 517, 737
Bst2UI	CCWGG	3 cut(s)	55, 263, 511
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	285, 351
BstDEI	CTNAG	2 cut(s)	150, 393
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	3 cut(s)	160, 435, 475
BstFNI	CGCG	1 cut(s)	283
BstMAI	GTCTC	5 cut(s)	16, 221, 228, 320, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	3 cut(s)	55, 263, 511
BstSCI	CCNGG	4 cut(s)	53, 261, 509, 588
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	71, 353
BsuTUI	ATCGAT	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	3 cut(s)	160, 435, 475
Cac8I	GCNNGC	2 cut(s)	285, 351
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	3 cut(s)	352, 513, 602
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	518
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	150, 393
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	3 cut(s)	369, 517, 737
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	513, 602
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	3 cut(s)	53, 261, 509
EcoT14I	CCWWGG	3 cut(s)	369, 517, 737
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	3 cut(s)	369, 517, 737
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	521
FaiI	YATR	8 cut(s)	292, 332, 519, 546, 564, 576, 600, 682
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	1 cut(s)	517
FauI	CCCGC	1 cut(s)	656
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	3 cut(s)	167, 442, 482
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	71, 353
HapII	CCGG	2 cut(s)	350, 590
Hin1II	CATG	1 cut(s)	521
HinfI	GANTC	4 cut(s)	6, 239, 505, 693
HpaII	CCGG	2 cut(s)	350, 590
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188III	TCNNGA	2 cut(s)	152, 449
Hpy8I	GTNNAC	1 cut(s)	605
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	268, 653
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	3 cut(s)	491, 581, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	150, 393
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	1 cut(s)	521
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	48, 56, 316
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	2 cut(s)	568, 635
MaeII	ACGT	1 cut(s)	534
MboII	GAAGA	4 cut(s)	103, 106, 121, 668
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	5 cut(s)	43, 252, 301, 411, 565
MlyI	GAGTC	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	583
MroNI	GCCGGC	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	3 cut(s)	245, 357, 644
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	2 cut(s)	350, 590
MspR9I	CCNGG	4 cut(s)	55, 263, 511, 590
Mva1269I	GAATGC	2 cut(s)	527, 581
MvaI	CCWGG	3 cut(s)	55, 263, 511
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	350
NaeI	GCCGGC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	517
NgoMIV	GCCGGC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	2 cut(s)	515, 735
NsiI	ATGCAT	1 cut(s)	583
PctI	GAATGC	2 cut(s)	527, 581
PdiI	GCCGGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	6, 505, 693
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	3 cut(s)	53, 261, 509
PspGI	CCWGG	3 cut(s)	53, 261, 509
PspN4I	GGNNCC	2 cut(s)	515, 735
PspPI	GGNCC	3 cut(s)	352, 513, 602
PspPPI	RGGWCCY	1 cut(s)	513
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	245, 357, 644
SatI	GCNGC	1 cut(s)	215
Sau96I	GGNCC	3 cut(s)	352, 513, 602
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	4 cut(s)	55, 263, 511, 590
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	8 cut(s)	53, 59, 78, 191, 267, 275, 371, 537
SfaNI	GCATC	2 cut(s)	568, 635
SinI	GGWCC	2 cut(s)	513, 602
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	5 cut(s)	43, 252, 301, 411, 565
SsiI	CCGC	3 cut(s)	281, 314, 663
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	4 cut(s)	53, 261, 509, 588
StyI	CCWWGG	3 cut(s)	369, 517, 737
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	3 cut(s)	9, 336, 365
TasI	AATT	5 cut(s)	43, 252, 301, 411, 565
TfiI	GAWTC	3 cut(s)	6, 505, 693
Tru1I	TTAA	3 cut(s)	245, 357, 644
Tru9I	TTAA	3 cut(s)	245, 357, 644
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	513, 602
XmnI	GAANNNNTTC	1 cut(s)	421
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.