prolyl 4-hydroxylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G23096 |
| fragaria_vesca | FvH4_1g17210 FvH4_1g17210 FvH4_1g17210 |
| malus_domestica | MD02G1182100.v1.1 MD15G1293300.v1.1 |
| prunus_persica | Prupe.6G224300_v2.0.a1 |
| pyrus_communis | pycom15g25630 |
| rosa_chinensis | RchiOBHm_Chr2g0107361 |
| rosa_laevigata | RLG00000017573 |
| rosa_multiflora | Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00136400 |
| rosa_rugosa | Rorug02G0142600 Rorug03G0188400 |
| rosa_samantha | Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400 |
| rosa_wichuraiana | Rw2G015300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 283 |
| AciI | CCGC | 2 cut(s) | 281, 314 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 39, 186, 523, 591 |
| AgsI | TTSAA | 3 cut(s) | 61, 67, 252 |
| AjiI | CACGTC | 1 cut(s) | 534 |
| AjnI | CCWGG | 3 cut(s) | 53, 261, 509 |
| AluBI | AGCT | 3 cut(s) | 51, 76, 273 |
| AluI | AGCT | 3 cut(s) | 51, 76, 273 |
| Alw21I | GWGCWC | 1 cut(s) | 53 |
| Alw26I | GTCTC | 5 cut(s) | 16, 221, 228, 320, 383 |
| AoxI | GGCC | 1 cut(s) | 351 |
| ApeKI | GCWGC | 1 cut(s) | 214 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 358, 390 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 421 |
| AspS9I | GGNCC | 3 cut(s) | 352, 513, 601 |
| AsuC2I | CCSGG | 1 cut(s) | 589 |
| AvaII | GGWCC | 2 cut(s) | 513, 601 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 1 cut(s) | 53 |
| BbvI | GCAGC | 1 cut(s) | 201 |
| BccI | CCATC | 1 cut(s) | 155 |
| BceAI | ACGGC | 1 cut(s) | 202 |
| BciT130I | CCWGG | 3 cut(s) | 55, 263, 511 |
| BciVI | GTATCC | 1 cut(s) | 288 |
| BcnI | CCSGG | 1 cut(s) | 589 |
| BcoDI | GTCTC | 5 cut(s) | 16, 221, 228, 320, 383 |
| BfuI | GTATCC | 1 cut(s) | 288 |
| BisI | GCNGC | 1 cut(s) | 215 |
| BlsI | GCNGC | 1 cut(s) | 216 |
| Bme1390I | CCNGG | 4 cut(s) | 55, 263, 511, 589 |
| Bme18I | GGWCC | 2 cut(s) | 513, 601 |
| BmgBI | CACGTC | 1 cut(s) | 534 |
| BmgT120I | GGNCC | 3 cut(s) | 352, 513, 601 |
| BmiI | GGNNCC | 1 cut(s) | 515 |
| BmrFI | CCNGG | 4 cut(s) | 55, 263, 511, 589 |
| BmsI | GCATC | 2 cut(s) | 567, 634 |
| BpmI | CTGGAG | 1 cut(s) | 37 |
| BpuMI | CCSGG | 1 cut(s) | 589 |
| Bsa29I | ATCGAT | 1 cut(s) | 336 |
| BsaI | GGTCTC | 2 cut(s) | 16, 221 |
| BsaJI | CCNNGG | 3 cut(s) | 369, 509, 517 |
| BsaWI | WCCGGW | 1 cut(s) | 230 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 39, 186, 523, 591 |
| Bse118I | RCCGGY | 2 cut(s) | 122, 349 |
| Bse3DI | GCAATG | 1 cut(s) | 326 |
| BseBI | CCWGG | 3 cut(s) | 55, 263, 511 |
| BseCI | ATCGAT | 1 cut(s) | 336 |
| BseDI | CCNNGG | 3 cut(s) | 369, 509, 517 |
| BseGI | GGATG | 3 cut(s) | 160, 435, 475 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 39, 186, 523, 591 |
| BseMI | GCAATG | 1 cut(s) | 326 |
| BseMII | CTCAG | 2 cut(s) | 164, 384 |
| BseRI | GAGGAG | 2 cut(s) | 127, 410 |
| BseXI | GCAGC | 1 cut(s) | 201 |
| Bsh1236I | CGCG | 1 cut(s) | 283 |
| BshFI | GGCC | 1 cut(s) | 353 |
| BshVI | ATCGAT | 1 cut(s) | 336 |
| BsiHKAI | GWGCWC | 1 cut(s) | 53 |
| BsiSI | CCGG | 4 cut(s) | 123, 231, 350, 589 |
| BslFI | GGGAC | 1 cut(s) | 475 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 39, 186, 523, 591 |
| BsmAI | GTCTC | 5 cut(s) | 16, 221, 228, 320, 383 |
| BsmBI | CGTCTC | 1 cut(s) | 228 |
| BsmFI | GGGAC | 1 cut(s) | 475 |
| BsmI | GAATGC | 2 cut(s) | 527, 580 |
| BsnI | GGCC | 1 cut(s) | 353 |
| Bso31I | GGTCTC | 2 cut(s) | 16, 221 |
| Bsp1286I | GDGCHC | 1 cut(s) | 53 |
| Bsp19I | CCATGG | 1 cut(s) | 517 |
| BspACI | CCGC | 2 cut(s) | 281, 314 |
| BspANI | GGCC | 1 cut(s) | 353 |
| BspCNI | CTCAG | 2 cut(s) | 163, 385 |
| BspDI | ATCGAT | 1 cut(s) | 336 |
| BspFNI | CGCG | 1 cut(s) | 283 |
| BspLI | GGNNCC | 1 cut(s) | 515 |
| BspTNI | GGTCTC | 2 cut(s) | 16, 221 |
| BsrDI | GCAATG | 1 cut(s) | 326 |
| BsrFI | RCCGGY | 2 cut(s) | 122, 349 |
| BssAI | RCCGGY | 2 cut(s) | 122, 349 |
| BssECI | CCNNGG | 3 cut(s) | 369, 509, 517 |
| BssT1I | CCWWGG | 2 cut(s) | 369, 517 |
| Bst2UI | CCWGG | 3 cut(s) | 55, 263, 511 |
| Bst4CI | ACNGT | 1 cut(s) | 91 |
| BstC8I | GCNNGC | 2 cut(s) | 285, 351 |
| BstDEI | CTNAG | 2 cut(s) | 150, 393 |
| BstDSI | CCRYGG | 1 cut(s) | 517 |
| BstF5I | GGATG | 3 cut(s) | 160, 435, 475 |
| BstFNI | CGCG | 1 cut(s) | 283 |
| BstMAI | GTCTC | 5 cut(s) | 16, 221, 228, 320, 383 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 350 |
| BstNI | CCWGG | 3 cut(s) | 55, 263, 511 |
| BstSCI | CCNGG | 4 cut(s) | 53, 261, 509, 587 |
| BstUI | CGCG | 1 cut(s) | 283 |
| BstV1I | GCAGC | 1 cut(s) | 201 |
| Bsu15I | ATCGAT | 1 cut(s) | 336 |
| BsuI | GTATCC | 1 cut(s) | 288 |
| BsuRI | GGCC | 1 cut(s) | 353 |
| BsuTUI | ATCGAT | 1 cut(s) | 336 |
| BtgI | CCRYGG | 1 cut(s) | 517 |
| BtrI | CACGTC | 1 cut(s) | 534 |
| BtsCI | GGATG | 3 cut(s) | 160, 435, 475 |
| Cac8I | GCNNGC | 2 cut(s) | 285, 351 |
| Cfr10I | RCCGGY | 2 cut(s) | 122, 349 |
| Cfr13I | GGNCC | 3 cut(s) | 352, 513, 601 |
| ClaI | ATCGAT | 1 cut(s) | 336 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 1 cut(s) | 518 |
| CviJI | RGCY | 9 cut(s) | 51, 70, 76, 273, 349, 353, 374, 443, 614 |
| CviKI_1 | RGCY | 9 cut(s) | 51, 70, 76, 273, 349, 353, 374, 443, 614 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 2 cut(s) | 150, 393 |
| Ecl136II | GAGCTC | 1 cut(s) | 51 |
| Eco130I | CCWWGG | 2 cut(s) | 369, 517 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco31I | GGTCTC | 2 cut(s) | 16, 221 |
| Eco47I | GGWCC | 2 cut(s) | 513, 601 |
| Eco53kI | GAGCTC | 1 cut(s) | 51 |
| EcoICRI | GAGCTC | 1 cut(s) | 51 |
| EcoO109I | RGGNCCY | 1 cut(s) | 513 |
| EcoRII | CCWGG | 3 cut(s) | 53, 261, 509 |
| EcoT14I | CCWWGG | 2 cut(s) | 369, 517 |
| EcoT22I | ATGCAT | 1 cut(s) | 582 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| ErhI | CCWWGG | 2 cut(s) | 369, 517 |
| Esp3I | CGTCTC | 1 cut(s) | 228 |
| FaeI | CATG | 1 cut(s) | 521 |
| FaiI | YATR | 7 cut(s) | 292, 332, 519, 545, 563, 575, 599 |
| FaqI | GGGAC | 1 cut(s) | 475 |
| FatI | CATG | 1 cut(s) | 517 |
| Fnu4HI | GCNGC | 1 cut(s) | 215 |
| FokI | GGATG | 3 cut(s) | 167, 442, 482 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| Fsp4HI | GCNGC | 1 cut(s) | 215 |
| GluI | GCNGC | 1 cut(s) | 215 |
| GsuI | CTGGAG | 1 cut(s) | 37 |
| HaeIII | GGCC | 1 cut(s) | 353 |
| HapII | CCGG | 4 cut(s) | 123, 231, 350, 589 |
| Hin1II | CATG | 1 cut(s) | 521 |
| HinfI | GANTC | 3 cut(s) | 6, 239, 505 |
| HpaII | CCGG | 4 cut(s) | 123, 231, 350, 589 |
| Hpy166II | GTNNAC | 1 cut(s) | 604 |
| Hpy188III | TCNNGA | 2 cut(s) | 152, 449 |
| Hpy8I | GTNNAC | 1 cut(s) | 604 |
| HpyAV | CCTTC | 1 cut(s) | 268 |
| HpyCH4III | ACNGT | 1 cut(s) | 91 |
| HpyCH4IV | ACGT | 1 cut(s) | 533 |
| HpyCH4V | TGCA | 3 cut(s) | 491, 580, 625 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 350 |
| HpyF3I | CTNAG | 2 cut(s) | 150, 393 |
| HpySE526I | ACGT | 1 cut(s) | 533 |
| Hsp92II | CATG | 1 cut(s) | 521 |
| KroI | GCCGGC | 1 cut(s) | 349 |
| KroNI | GCCGGC | 1 cut(s) | 351 |
| LmnI | GCTCC | 3 cut(s) | 48, 56, 316 |
| Lsp1109I | GCAGC | 1 cut(s) | 201 |
| LweI | GCATC | 2 cut(s) | 567, 634 |
| MaeII | ACGT | 1 cut(s) | 533 |
| MboII | GAAGA | 3 cut(s) | 103, 106, 121 |
| MhlI | GDGCHC | 1 cut(s) | 53 |
| MluCI | AATT | 5 cut(s) | 43, 252, 301, 411, 564 |
| MlyI | GAGTC | 1 cut(s) | 248 |
| Mph1103I | ATGCAT | 1 cut(s) | 582 |
| MroNI | GCCGGC | 1 cut(s) | 349 |
| MroXI | GAANNNNTTC | 1 cut(s) | 421 |
| MseI | TTAA | 3 cut(s) | 245, 357, 643 |
| MslI | CAYNNNNRTG | 1 cut(s) | 575 |
| MspI | CCGG | 4 cut(s) | 123, 231, 350, 589 |
| MspR9I | CCNGG | 4 cut(s) | 55, 263, 511, 589 |
| Mva1269I | GAATGC | 2 cut(s) | 527, 580 |
| MvaI | CCWGG | 3 cut(s) | 55, 263, 511 |
| MvnI | CGCG | 1 cut(s) | 283 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 350 |
| NaeI | GCCGGC | 1 cut(s) | 351 |
| NciI | CCSGG | 1 cut(s) | 589 |
| NcoI | CCATGG | 1 cut(s) | 517 |
| NgoMIV | GCCGGC | 1 cut(s) | 349 |
| NlaIII | CATG | 1 cut(s) | 521 |
| NlaIV | GGNNCC | 1 cut(s) | 515 |
| NsiI | ATGCAT | 1 cut(s) | 582 |
| PctI | GAATGC | 2 cut(s) | 527, 580 |
| PdiI | GCCGGC | 1 cut(s) | 351 |
| PdmI | GAANNNNTTC | 1 cut(s) | 421 |
| PfeI | GAWTC | 2 cut(s) | 6, 505 |
| PkrI | GCNGC | 1 cut(s) | 216 |
| PleI | GAGTC | 1 cut(s) | 247 |
| PpsI | GAGTC | 1 cut(s) | 247 |
| PpuMI | RGGWCCY | 1 cut(s) | 513 |
| Psp124BI | GAGCTC | 1 cut(s) | 53 |
| Psp5II | RGGWCCY | 1 cut(s) | 513 |
| Psp6I | CCWGG | 3 cut(s) | 53, 261, 509 |
| PspGI | CCWGG | 3 cut(s) | 53, 261, 509 |
| PspN4I | GGNNCC | 1 cut(s) | 515 |
| PspPI | GGNCC | 3 cut(s) | 352, 513, 601 |
| PspPPI | RGGWCCY | 1 cut(s) | 513 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| RseI | CAYNNNNRTG | 1 cut(s) | 575 |
| SacI | GAGCTC | 1 cut(s) | 53 |
| SaqAI | TTAA | 3 cut(s) | 245, 357, 643 |
| SatI | GCNGC | 1 cut(s) | 215 |
| Sau96I | GGNCC | 3 cut(s) | 352, 513, 601 |
| SchI | GAGTC | 1 cut(s) | 248 |
| ScrFI | CCNGG | 4 cut(s) | 55, 263, 511, 589 |
| SduI | GDGCHC | 1 cut(s) | 53 |
| SetI | ASST | 8 cut(s) | 53, 59, 78, 191, 267, 275, 371, 536 |
| SfaNI | GCATC | 2 cut(s) | 567, 634 |
| SinI | GGWCC | 2 cut(s) | 513, 601 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 575 |
| Sse9I | AATT | 5 cut(s) | 43, 252, 301, 411, 564 |
| SsiI | CCGC | 2 cut(s) | 281, 314 |
| SstI | GAGCTC | 1 cut(s) | 53 |
| StyD4I | CCNGG | 4 cut(s) | 53, 261, 509, 587 |
| StyI | CCWWGG | 2 cut(s) | 369, 517 |
| TaaI | ACNGT | 1 cut(s) | 91 |
| TaiI | ACGT | 1 cut(s) | 536 |
| TaqI | TCGA | 3 cut(s) | 9, 336, 365 |
| TasI | AATT | 5 cut(s) | 43, 252, 301, 411, 564 |
| TfiI | GAWTC | 2 cut(s) | 6, 505 |
| Tru1I | TTAA | 3 cut(s) | 245, 357, 643 |
| Tru9I | TTAA | 3 cut(s) | 245, 357, 643 |
| TseI | GCWGC | 1 cut(s) | 214 |
| TspDTI | ATGAA | 1 cut(s) | 121 |
| VpaK11BI | GGWCC | 2 cut(s) | 513, 601 |
| XmnI | GAANNNNTTC | 1 cut(s) | 421 |
| Zsp2I | ATGCAT | 1 cut(s) | 582 |